Wall clock time and date at job start Mon Mar 30 2020 00:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47005 * 2 1 4 4 C 1.36939 * 119.99660 * 263.78848 * 3 2 1 5 5 H 1.07998 * 119.99973 * 142.61784 * 4 3 2 6 6 C 1.38817 * 119.99803 * 322.60988 * 4 3 2 7 7 N 1.31620 * 119.99384 * 157.39649 * 6 4 3 8 8 Si 1.86795 * 120.00377 * 337.39491 * 6 4 3 9 9 H 1.48503 * 109.47143 * 95.71232 * 8 6 4 10 10 H 1.48493 * 109.47063 * 215.71576 * 8 6 4 11 11 H 1.48506 * 109.47182 * 335.71353 * 8 6 4 12 12 C 1.46494 * 120.00028 * 83.78834 * 3 2 1 13 13 C 1.52995 * 109.47492 * 90.00076 * 12 3 2 14 14 S 1.81400 * 109.47323 * 179.97438 * 13 12 3 15 15 O 1.42089 * 109.47040 * 289.05248 * 14 13 12 16 16 C 1.76200 * 102.99848 * 179.97438 * 14 13 12 17 17 C 1.38230 * 119.99874 * 90.00224 * 16 14 13 18 18 C 1.38240 * 119.99880 * 180.02562 * 17 16 14 19 19 C 1.38234 * 120.00043 * 359.95120 * 18 17 16 20 20 C 1.38237 * 119.99841 * 0.28527 * 19 18 17 21 21 C 1.38232 * 119.99795 * 359.52186 * 20 19 18 22 22 H 1.09001 * 109.46631 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47122 * 300.00032 * 1 2 3 24 24 H 1.08996 * 109.46853 * 60.00355 * 1 2 3 25 25 H 1.08998 * 109.47079 * 239.99424 * 2 1 3 26 26 H 1.09005 * 109.46618 * 119.99837 * 2 1 3 27 27 H 0.96998 * 119.99663 * 180.02562 * 7 6 4 28 28 H 1.09008 * 109.47428 * 329.99310 * 12 3 2 29 29 H 1.09001 * 109.47003 * 209.99897 * 12 3 2 30 30 H 1.08999 * 109.47142 * 59.99771 * 13 12 3 31 31 H 1.09001 * 109.46850 * 299.99915 * 13 12 3 32 32 H 1.07999 * 120.00342 * 359.97438 * 17 16 14 33 33 H 1.07999 * 119.99909 * 179.97438 * 18 17 16 34 34 H 1.08004 * 119.99995 * 180.02562 * 19 18 17 35 35 H 1.07996 * 119.99530 * 179.72494 * 20 19 18 36 36 H 1.08002 * 119.99325 * 180.21458 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3675 1.9839 -1.1790 5 1 2.1496 3.0300 -1.3360 6 6 3.0017 1.2503 -2.1723 7 7 2.9451 1.6518 -3.4245 8 14 3.9354 -0.3064 -1.7318 9 1 3.0564 -1.4856 -1.9368 10 1 5.1348 -0.4264 -2.5991 11 1 4.3574 -0.2449 -0.3093 12 6 2.1331 2.1175 1.2612 13 6 3.5250 1.8960 1.8564 14 16 3.6673 2.8084 3.4178 15 8 3.7248 4.2023 3.1482 16 6 5.3072 2.4381 3.9452 17 6 6.3576 3.2482 3.5567 18 6 7.6443 2.9574 3.9701 19 6 7.8803 1.8570 4.7728 20 6 6.8304 1.0441 5.1572 21 6 5.5433 1.3372 4.7471 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.3879 1.1390 -4.1186 28 1 1.3775 1.7599 1.9609 29 1 1.9822 3.1811 1.0760 30 1 4.2804 2.2537 1.1569 31 1 3.6758 0.8325 2.0416 32 1 6.1733 4.1080 2.9296 33 1 8.4651 3.5901 3.6662 34 1 8.8855 1.6300 5.0960 35 1 7.0155 0.1818 5.7806 36 1 4.7226 0.7040 5.0504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355445347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:37 Heat of formation + Delta-G solvation = -16.265238 kcal Electronic energy + Delta-G solvation = -17970.494681 eV Core-core repulsion = 15160.005464 eV Total energy + Delta-G solvation = -2810.489217 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86470 -38.22525 -36.84841 -34.08150 -32.68294 -32.01137 -31.87419 -30.14039 -26.07460 -24.55175 -23.71313 -23.57274 -21.85861 -19.05168 -18.78690 -17.89559 -17.28887 -16.75658 -16.26114 -16.10883 -15.70164 -15.40260 -15.08905 -14.85651 -14.58599 -14.34829 -14.04830 -13.77903 -13.58959 -13.24471 -13.14127 -12.81741 -12.63192 -12.51950 -12.33105 -12.09632 -11.80079 -11.67119 -11.38382 -11.16875 -10.67454 -10.21216 -9.92355 -9.40165 -8.78769 -8.25556 -5.62026 -0.06500 0.40516 0.98385 1.24719 1.36078 1.47393 1.83055 2.37006 2.70864 2.98049 3.01471 3.46508 3.90110 4.06455 4.13676 4.17824 4.25545 4.39530 4.50090 4.58280 4.69850 4.73418 4.81585 4.84065 4.93746 5.05402 5.10751 5.24534 5.32714 5.35707 5.38630 5.48450 5.57492 5.91077 6.01260 6.10910 6.97709 7.61625 7.99923 8.95197 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.005770 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.602495 B = 4851.716620 C = 5247.573532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.118 3.882 3 N -0.611 5.611 4 C -0.259 4.259 5 H 0.026 0.974 6 C -0.028 4.028 7 N -0.954 5.954 8 Si 0.948 3.052 9 H -0.264 1.264 10 H -0.316 1.316 11 H -0.248 1.248 12 C 0.162 3.838 13 C -0.465 4.465 14 S 1.400 4.600 15 O -0.924 6.924 16 C -0.475 4.475 17 C -0.093 4.093 18 C -0.154 4.154 19 C -0.090 4.090 20 C -0.137 4.137 21 C -0.040 4.040 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.023 0.977 25 H 0.030 0.970 26 H 0.080 0.920 27 H 0.262 0.738 28 H 0.108 0.892 29 H 0.023 0.977 30 H 0.040 0.960 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.153 0.847 35 H 0.167 0.833 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.911 -8.402 23.444 25.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.006 4.006 3 N -0.335 5.335 4 C -0.389 4.389 5 H 0.044 0.956 6 C -0.224 4.224 7 N -0.598 5.598 8 Si 0.775 3.225 9 H -0.191 1.191 10 H -0.246 1.246 11 H -0.172 1.172 12 C 0.035 3.965 13 C -0.604 4.604 14 S 1.599 4.401 15 O -0.919 6.919 16 C -0.573 4.573 17 C -0.112 4.112 18 C -0.173 4.173 19 C -0.108 4.108 20 C -0.156 4.156 21 C -0.059 4.059 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.042 0.958 25 H 0.048 0.952 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.126 0.874 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.150 0.850 32 H 0.108 0.892 33 H 0.147 0.853 34 H 0.171 0.829 35 H 0.185 0.815 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.256 -7.824 23.735 25.203 hybrid contribution 2.535 0.856 -2.686 3.791 sum 5.792 -6.968 21.049 22.917 Atomic orbital electron populations 1.22156 0.96688 1.01474 1.01264 1.21379 0.94539 0.84742 0.99930 1.44314 1.74474 1.12554 1.02143 1.18641 1.32483 0.95394 0.92406 0.95607 1.26208 0.98859 1.02435 0.94903 1.70028 1.46031 1.43136 1.00629 0.85787 0.77773 0.80102 0.78829 1.19053 1.24581 1.17151 1.20704 0.92863 0.95303 0.87620 1.28506 1.04627 1.11996 1.15242 1.68186 0.90417 0.85773 0.95763 1.92952 1.83648 1.30839 1.84492 1.27823 1.15962 1.04059 1.09442 1.21158 0.94540 0.97888 0.97661 1.21457 0.96211 0.99608 1.00038 1.21753 1.01199 0.93163 0.94706 1.21823 0.92472 1.00658 1.00641 1.21491 0.99352 0.92962 0.92101 0.90936 0.91156 0.95789 0.95162 0.90177 0.92913 0.87399 0.95815 0.94086 0.84978 0.89218 0.85282 0.82942 0.81545 0.79811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.16 10.23 71.98 0.74 -4.42 16 2 C 0.12 4.58 5.01 86.38 0.43 5.02 16 3 N -0.61 -28.36 2.08 -702.00 -1.46 -29.82 16 4 C -0.26 -15.37 9.91 84.03 0.83 -14.53 16 5 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 6 C -0.03 -1.71 5.26 84.86 0.45 -1.26 16 7 N -0.95 -62.23 13.97 21.65 0.30 -61.93 16 8 Si 0.95 46.77 25.05 68.60 1.72 48.49 16 9 H -0.26 -12.04 6.69 99.48 0.67 -11.37 16 10 H -0.32 -16.19 7.11 99.48 0.71 -15.48 16 11 H -0.25 -11.29 7.11 99.48 0.71 -10.59 16 12 C 0.16 6.06 5.70 86.38 0.49 6.55 16 13 C -0.47 -15.57 6.21 71.98 0.45 -15.12 16 14 S 1.40 36.37 13.55 -56.49 -0.77 35.60 16 15 O -0.92 -37.64 16.90 -148.98 -2.52 -40.16 16 16 C -0.48 -12.18 5.61 22.27 0.12 -12.05 16 17 C -0.09 -2.90 9.44 22.27 0.21 -2.69 16 18 C -0.15 -3.82 10.05 22.27 0.22 -3.59 16 19 C -0.09 -1.63 10.05 22.27 0.22 -1.41 16 20 C -0.14 -2.05 10.05 22.27 0.22 -1.83 16 21 C -0.04 -0.66 9.75 22.27 0.22 -0.45 16 22 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 24 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.03 1.34 3.60 -2.39 -0.01 1.33 16 26 H 0.08 2.43 8.12 -2.38 -0.02 2.41 16 27 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 28 H 0.11 2.82 8.05 -2.38 -0.02 2.80 16 29 H 0.02 1.02 8.04 -2.39 -0.02 1.00 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.13 3.61 8.14 -2.39 -0.02 3.59 16 32 H 0.09 3.34 7.46 -2.91 -0.02 3.32 16 33 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 34 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.18 1.15 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -89.07 314.26 2.89 -86.18 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 1.01 Total: 7.43 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 4.61 Total: -45.79 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -1.16 Total: -91.76 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -2.52 Total: -40.16 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.72 Total: 48.49 kcal Atomic # 16 Polarization: 36.37 SS G_CDS: -0.77 Total: 35.60 kcal Total: -89.07 2.89 -86.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355445347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.915 kcal (2) G-P(sol) polarization free energy of solvation -89.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds