Wall clock time and date at job start Mon Mar 30 2020 00:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.46713 * 2 1 4 4 C 1.36938 * 119.99963 * 265.79197 * 3 2 1 5 5 H 1.08001 * 119.99442 * 146.22036 * 4 3 2 6 6 C 1.38810 * 120.00228 * 326.21949 * 4 3 2 7 7 N 1.31615 * 119.99856 * 337.68279 * 6 4 3 8 8 Si 1.86798 * 119.99791 * 157.67968 * 6 4 3 9 9 H 1.48494 * 109.47224 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47000 * 120.00462 * 8 6 4 11 11 H 1.48496 * 109.47210 * 239.99893 * 8 6 4 12 12 C 1.46503 * 119.99840 * 85.79759 * 3 2 1 13 13 C 1.52998 * 109.47257 * 89.99718 * 12 3 2 14 14 S 1.81394 * 109.47070 * 179.97438 * 13 12 3 15 15 O 1.42104 * 109.47193 * 70.94365 * 14 13 12 16 16 C 1.76208 * 103.00197 * 179.97438 * 14 13 12 17 17 C 1.38234 * 119.99683 * 89.99549 * 16 14 13 18 18 C 1.38234 * 119.99724 * 179.97438 * 17 16 14 19 19 C 1.38233 * 120.00150 * 359.97438 * 18 17 16 20 20 C 1.38241 * 119.99824 * 0.27425 * 19 18 17 21 21 C 1.38231 * 119.99884 * 270.02519 * 16 14 13 22 22 H 1.08997 * 109.47558 * 59.99986 * 1 2 3 23 23 H 1.08999 * 109.46996 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46822 * 299.99715 * 1 2 3 25 25 H 1.08998 * 109.46822 * 240.00285 * 2 1 3 26 26 H 1.08994 * 109.47085 * 119.99893 * 2 1 3 27 27 H 0.97005 * 120.00124 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47192 * 329.99681 * 12 3 2 29 29 H 1.09003 * 109.46846 * 209.99589 * 12 3 2 30 30 H 1.09004 * 109.47050 * 59.99876 * 13 12 3 31 31 H 1.09003 * 109.47087 * 299.99722 * 13 12 3 32 32 H 1.08002 * 120.00387 * 0.02562 * 17 16 14 33 33 H 1.08000 * 120.00059 * 180.02562 * 18 17 16 34 34 H 1.08002 * 120.00349 * 180.02562 * 19 18 17 35 35 H 1.07997 * 119.99516 * 179.72985 * 20 19 18 36 36 H 1.07997 * 120.00041 * 359.97438 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3285 1.9978 -1.1827 5 1 2.1593 3.0581 -1.2995 6 6 2.8604 1.2601 -2.2314 7 7 3.4695 0.1185 -1.9904 8 14 2.7117 1.8877 -3.9845 9 1 1.9891 3.1849 -3.9863 10 1 4.0679 2.0762 -4.5595 11 1 1.9607 0.9010 -4.8014 12 6 2.1748 2.1029 1.2654 13 6 3.5855 1.8746 1.8116 14 16 3.7794 2.7687 3.3779 15 8 3.0094 2.1294 4.3867 16 6 5.4359 2.3926 3.8467 17 6 6.4731 3.2074 3.4331 18 6 7.7725 2.9127 3.8013 19 6 8.0346 1.8034 4.5834 20 6 6.9978 0.9857 4.9927 21 6 5.6981 1.2824 4.6274 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.8409 -0.3972 -2.7233 28 1 1.4427 1.7368 1.9853 29 1 2.0181 3.1685 1.0977 30 1 4.3176 2.2407 1.0917 31 1 3.7422 0.8090 1.9793 32 1 6.2683 4.0748 2.8231 33 1 8.5829 3.5495 3.4785 34 1 9.0498 1.5734 4.8714 35 1 7.2032 0.1167 5.6001 36 1 4.8877 0.6458 4.9504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355445348.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:41 Heat of formation + Delta-G solvation = 4.454884 kcal Electronic energy + Delta-G solvation = -17854.417255 eV Core-core repulsion = 15044.826530 eV Total energy + Delta-G solvation = -2809.590725 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.86537 -36.13213 -35.28585 -31.91858 -31.00446 -30.87543 -30.67929 -28.02466 -24.22467 -22.95984 -22.56375 -22.26000 -19.93281 -17.92470 -16.77255 -16.61271 -15.49856 -15.07684 -14.80217 -14.63737 -14.09016 -14.04484 -13.56075 -13.44989 -13.15150 -12.66745 -12.40202 -12.14627 -11.85825 -11.58201 -11.33363 -11.18657 -11.05700 -10.85914 -10.70417 -10.34903 -10.13963 -9.88600 -9.67435 -9.55873 -9.13001 -8.91724 -8.52195 -7.96221 -6.66063 -5.82498 -3.35021 1.03141 1.41306 2.20850 3.10541 3.33300 3.42418 3.44649 3.76438 4.28360 4.45967 4.90019 4.95631 5.06537 5.28443 5.42093 5.54771 5.57069 5.80674 5.82589 5.97818 6.02014 6.30329 6.34266 6.37413 6.38051 6.44977 6.55590 6.61999 6.66561 6.88928 6.96863 7.02701 7.26058 7.72951 7.79303 8.45915 9.14052 9.77785 10.34935 11.17896 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.021180 B = 0.005225 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.697668 B = 5357.966515 C = 6012.650341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 N -0.575 5.575 4 C -0.256 4.256 5 H 0.067 0.933 6 C 0.007 3.993 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.290 1.290 11 H -0.288 1.288 12 C 0.165 3.835 13 C -0.443 4.443 14 S 1.290 4.710 15 O -0.867 6.867 16 C -0.445 4.445 17 C -0.046 4.046 18 C -0.139 4.139 19 C -0.095 4.095 20 C -0.139 4.139 21 C -0.056 4.056 22 H 0.050 0.950 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.100 0.900 26 H 0.017 0.983 27 H 0.254 0.746 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.215 6.831 9.616 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.295 5.295 4 C -0.386 4.386 5 H 0.085 0.915 6 C -0.193 4.193 7 N -0.530 5.530 8 Si 0.728 3.272 9 H -0.199 1.199 10 H -0.217 1.217 11 H -0.215 1.215 12 C 0.037 3.963 13 C -0.584 4.584 14 S 1.489 4.511 15 O -0.863 6.863 16 C -0.541 4.541 17 C -0.066 4.066 18 C -0.158 4.158 19 C -0.113 4.113 20 C -0.158 4.158 21 C -0.075 4.075 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.118 0.882 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.134 0.866 31 H 0.096 0.904 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.626 7.266 10.018 13.594 hybrid contribution 0.751 -2.277 -0.711 2.501 sum 6.378 4.988 9.307 12.336 Atomic orbital electron populations 1.22300 1.00684 0.98813 1.00474 1.20978 0.89945 0.86417 1.01741 1.44016 1.73002 1.11837 1.00648 1.19192 1.35904 0.94227 0.89318 0.91525 1.25139 0.96979 0.97870 0.99305 1.70008 1.36395 1.15841 1.30753 0.86302 0.77427 0.78533 0.84985 1.19942 1.21711 1.21506 1.20601 0.89890 0.96873 0.88973 1.28503 1.08051 1.09545 1.12338 1.69198 0.79014 1.16323 0.86532 1.93042 1.63378 1.78028 1.51818 1.27936 1.17828 1.01677 1.06651 1.20898 0.91712 0.97815 0.96134 1.21255 0.97056 0.98066 0.99439 1.21273 0.98864 0.94597 0.96579 1.21229 0.93127 1.00079 1.01342 1.21142 0.96946 0.95123 0.94297 0.93116 0.94658 0.94794 0.88239 0.96425 0.93593 0.94284 0.92648 0.86574 0.90436 0.84614 0.85671 0.86113 0.86177 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 10.24 37.16 0.38 -3.05 16 2 C 0.14 3.30 5.97 -4.04 -0.02 3.27 16 3 N -0.57 -14.14 2.45 -173.23 -0.43 -14.56 16 4 C -0.26 -6.72 9.49 -15.06 -0.14 -6.86 16 5 H 0.07 1.69 7.92 -52.49 -0.42 1.28 16 6 C 0.01 0.19 4.93 -17.43 -0.09 0.11 16 7 N -0.89 -25.13 11.32 55.49 0.63 -24.50 16 8 Si 0.90 20.90 29.61 -169.99 -5.03 15.87 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.17 3.40 5.69 -4.04 -0.02 3.38 16 13 C -0.44 -8.31 6.21 37.16 0.23 -8.08 16 14 S 1.29 19.02 13.55 -107.50 -1.46 17.56 16 15 O -0.87 -17.46 16.90 -35.23 -0.60 -18.05 16 16 C -0.45 -6.54 5.61 -39.59 -0.22 -6.77 16 17 C -0.05 -0.56 9.75 -39.58 -0.39 -0.95 16 18 C -0.14 -1.57 10.05 -39.58 -0.40 -1.97 16 19 C -0.09 -1.11 10.05 -39.58 -0.40 -1.51 16 20 C -0.14 -1.85 10.05 -39.58 -0.40 -2.25 16 21 C -0.06 -0.88 9.44 -39.59 -0.37 -1.26 16 22 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.10 2.71 5.32 -51.93 -0.28 2.43 16 26 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 27 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 29 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 30 H 0.12 2.22 8.14 -51.92 -0.42 1.80 16 31 H 0.08 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.12 2.11 7.45 -52.49 -0.39 1.72 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -34.10 318.79 -9.20 -43.30 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.28 Total: 1.51 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -1.84 Total: -25.93 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.20 Total: -39.07 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.60 Total: -18.05 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Atomic # 16 Polarization: 19.02 SS G_CDS: -1.46 Total: 17.56 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.10 -9.20 -43.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355445348.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.756 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds