Wall clock time and date at job start Mon Mar 30 2020 00:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.46713 * 2 1 4 4 C 1.36938 * 119.99963 * 265.79197 * 3 2 1 5 5 H 1.08001 * 119.99442 * 146.22036 * 4 3 2 6 6 C 1.38810 * 120.00228 * 326.21949 * 4 3 2 7 7 N 1.31615 * 119.99856 * 337.68279 * 6 4 3 8 8 Si 1.86798 * 119.99791 * 157.67968 * 6 4 3 9 9 H 1.48494 * 109.47224 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47000 * 120.00462 * 8 6 4 11 11 H 1.48496 * 109.47210 * 239.99893 * 8 6 4 12 12 C 1.46503 * 119.99840 * 85.79759 * 3 2 1 13 13 C 1.52998 * 109.47257 * 89.99718 * 12 3 2 14 14 S 1.81394 * 109.47070 * 179.97438 * 13 12 3 15 15 O 1.42104 * 109.47193 * 70.94365 * 14 13 12 16 16 C 1.76208 * 103.00197 * 179.97438 * 14 13 12 17 17 C 1.38234 * 119.99683 * 89.99549 * 16 14 13 18 18 C 1.38234 * 119.99724 * 179.97438 * 17 16 14 19 19 C 1.38233 * 120.00150 * 359.97438 * 18 17 16 20 20 C 1.38241 * 119.99824 * 0.27425 * 19 18 17 21 21 C 1.38231 * 119.99884 * 270.02519 * 16 14 13 22 22 H 1.08997 * 109.47558 * 59.99986 * 1 2 3 23 23 H 1.08999 * 109.46996 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46822 * 299.99715 * 1 2 3 25 25 H 1.08998 * 109.46822 * 240.00285 * 2 1 3 26 26 H 1.08994 * 109.47085 * 119.99893 * 2 1 3 27 27 H 0.97005 * 120.00124 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47192 * 329.99681 * 12 3 2 29 29 H 1.09003 * 109.46846 * 209.99589 * 12 3 2 30 30 H 1.09004 * 109.47050 * 59.99876 * 13 12 3 31 31 H 1.09003 * 109.47087 * 299.99722 * 13 12 3 32 32 H 1.08002 * 120.00387 * 0.02562 * 17 16 14 33 33 H 1.08000 * 120.00059 * 180.02562 * 18 17 16 34 34 H 1.08002 * 120.00349 * 180.02562 * 19 18 17 35 35 H 1.07997 * 119.99516 * 179.72985 * 20 19 18 36 36 H 1.07997 * 120.00041 * 359.97438 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3285 1.9978 -1.1827 5 1 2.1593 3.0581 -1.2995 6 6 2.8604 1.2601 -2.2314 7 7 3.4695 0.1185 -1.9904 8 14 2.7117 1.8877 -3.9845 9 1 1.9891 3.1849 -3.9863 10 1 4.0679 2.0762 -4.5595 11 1 1.9607 0.9010 -4.8014 12 6 2.1748 2.1029 1.2654 13 6 3.5855 1.8746 1.8116 14 16 3.7794 2.7687 3.3779 15 8 3.0094 2.1294 4.3867 16 6 5.4359 2.3926 3.8467 17 6 6.4731 3.2074 3.4331 18 6 7.7725 2.9127 3.8013 19 6 8.0346 1.8034 4.5834 20 6 6.9978 0.9857 4.9927 21 6 5.6981 1.2824 4.6274 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.8409 -0.3972 -2.7233 28 1 1.4427 1.7368 1.9853 29 1 2.0181 3.1685 1.0977 30 1 4.3176 2.2407 1.0917 31 1 3.7422 0.8090 1.9793 32 1 6.2683 4.0748 2.8231 33 1 8.5829 3.5495 3.4785 34 1 9.0498 1.5734 4.8714 35 1 7.2032 0.1167 5.6001 36 1 4.8877 0.6458 4.9504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355445348.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:40 Heat of formation + Delta-G solvation = -17.033687 kcal Electronic energy + Delta-G solvation = -17855.349069 eV Core-core repulsion = 15044.826530 eV Total energy + Delta-G solvation = -2810.522539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.85757 -37.98171 -36.81290 -33.81889 -32.47017 -32.00005 -31.87182 -29.85530 -26.11509 -24.39247 -23.61395 -23.56558 -21.76729 -19.06343 -18.61780 -17.89938 -16.90962 -16.53655 -16.17551 -16.09646 -15.78832 -15.29936 -15.06565 -14.90008 -14.34015 -14.15024 -13.95468 -13.73247 -13.32176 -13.19599 -12.94569 -12.73864 -12.54335 -12.48647 -12.11813 -12.06414 -11.95885 -11.65980 -11.48080 -11.12548 -10.52601 -10.19535 -9.91947 -9.35664 -8.61730 -7.81442 -5.38356 -0.05593 0.41001 0.99682 1.49491 1.53675 1.63596 1.83564 2.54809 2.70967 2.98734 3.28175 3.75438 3.90277 4.06587 4.15639 4.17987 4.35959 4.47377 4.50110 4.58562 4.72463 4.84484 4.85301 4.86747 5.01462 5.05713 5.09066 5.33560 5.38530 5.40847 5.43778 5.48292 5.70160 5.81683 6.01273 6.46645 7.15207 7.84870 8.39481 9.17678 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.021180 B = 0.005225 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.697668 B = 5357.966515 C = 6012.650341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.594 5.594 4 C -0.258 4.258 5 H 0.077 0.923 6 C -0.045 4.045 7 N -0.925 5.925 8 Si 0.961 3.039 9 H -0.260 1.260 10 H -0.292 1.292 11 H -0.296 1.296 12 C 0.157 3.843 13 C -0.447 4.447 14 S 1.389 4.611 15 O -0.920 6.920 16 C -0.474 4.474 17 C -0.045 4.045 18 C -0.139 4.139 19 C -0.091 4.091 20 C -0.152 4.152 21 C -0.091 4.091 22 H 0.044 0.956 23 H 0.055 0.945 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.249 0.751 28 H 0.035 0.965 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.036 0.964 32 H 0.176 0.824 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.134 0.866 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.594 9.247 9.749 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.006 3.994 3 N -0.315 5.315 4 C -0.389 4.389 5 H 0.094 0.906 6 C -0.241 4.241 7 N -0.570 5.570 8 Si 0.790 3.210 9 H -0.183 1.183 10 H -0.219 1.219 11 H -0.224 1.224 12 C 0.030 3.970 13 C -0.586 4.586 14 S 1.588 4.412 15 O -0.915 6.915 16 C -0.571 4.571 17 C -0.064 4.064 18 C -0.157 4.157 19 C -0.108 4.108 20 C -0.171 4.171 21 C -0.110 4.110 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.023 0.977 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.055 0.945 32 H 0.193 0.807 33 H 0.182 0.818 34 H 0.172 0.828 35 H 0.152 0.848 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.968 9.698 10.146 15.669 hybrid contribution 0.479 -3.001 -0.569 3.092 sum 7.446 6.697 9.577 13.857 Atomic orbital electron populations 1.22123 0.97937 1.00248 1.00596 1.20884 0.92151 0.86657 0.99680 1.44200 1.73808 1.11713 1.01802 1.19532 1.34589 0.94642 0.90098 0.90574 1.25858 0.97256 0.98257 1.02751 1.70163 1.38163 1.17392 1.31307 0.85306 0.77031 0.78260 0.80440 1.18348 1.21922 1.22357 1.20756 0.90700 0.98076 0.87473 1.28395 1.06894 1.07484 1.15817 1.68457 0.77878 1.12345 0.82507 1.92914 1.66258 1.78563 1.53804 1.27800 1.18073 1.02927 1.08308 1.21445 0.91396 0.98137 0.95424 1.21795 0.97712 0.98041 0.98175 1.21753 0.99855 0.93897 0.95332 1.21478 0.92609 1.01209 1.01794 1.21154 0.97594 0.95982 0.96285 0.93725 0.92637 0.93712 0.91097 0.97750 0.94216 0.94682 0.89565 0.86859 0.94481 0.80692 0.81841 0.82769 0.84780 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.27 10.24 71.98 0.74 -5.53 16 2 C 0.13 6.67 5.97 86.38 0.52 7.18 16 3 N -0.59 -29.59 2.45 -701.98 -1.72 -31.31 16 4 C -0.26 -13.51 9.49 84.03 0.80 -12.71 16 5 H 0.08 3.76 7.92 -2.91 -0.02 3.74 16 6 C -0.04 -2.42 4.93 84.86 0.42 -2.00 16 7 N -0.93 -53.94 11.32 21.65 0.25 -53.69 16 8 Si 0.96 43.13 29.61 68.60 2.03 45.16 16 9 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 12 C 0.16 6.47 5.69 86.38 0.49 6.96 16 13 C -0.45 -17.10 6.21 71.98 0.45 -16.65 16 14 S 1.39 40.29 13.55 -56.49 -0.77 39.53 16 15 O -0.92 -37.64 16.90 -148.98 -2.52 -40.16 16 16 C -0.47 -13.52 5.61 22.27 0.12 -13.39 16 17 C -0.05 -0.94 9.75 22.27 0.22 -0.73 16 18 C -0.14 -2.55 10.05 22.27 0.22 -2.33 16 19 C -0.09 -1.82 10.05 22.27 0.22 -1.59 16 20 C -0.15 -3.91 10.05 22.27 0.22 -3.68 16 21 C -0.09 -2.92 9.44 22.27 0.21 -2.71 16 22 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 4.02 5.32 -2.39 -0.01 4.01 16 26 H 0.00 0.21 8.10 -2.39 -0.02 0.19 16 27 H 0.25 14.05 8.31 -92.70 -0.77 13.28 16 28 H 0.03 1.44 8.07 -2.38 -0.02 1.43 16 29 H 0.09 2.97 8.04 -2.39 -0.02 2.96 16 30 H 0.11 4.35 8.14 -2.39 -0.02 4.33 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.10 3.51 7.45 -2.91 -0.02 3.48 16 Total: -1.00 -76.49 318.79 2.95 -73.55 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.04 Total: 14.12 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 4.63 Total: -47.19 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -1.48 Total: -85.00 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -2.52 Total: -40.16 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 40.29 SS G_CDS: -0.77 Total: 39.53 kcal Total: -76.49 2.95 -73.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355445348.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.512 kcal (2) G-P(sol) polarization free energy of solvation -76.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds