Wall clock time and date at job start Mon Mar 30 2020 00:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 O 1.42905 * 109.46650 * 180.02562 * 15 13 12 17 17 C 1.35896 * 116.99299 * 179.97438 * 16 15 13 18 18 C 1.38769 * 120.04965 * 359.72051 * 17 16 15 19 19 C 1.38125 * 119.99966 * 179.74811 * 18 17 16 20 20 C 1.38250 * 120.07794 * 0.52832 * 19 18 17 21 21 C 1.38471 * 120.08540 * 359.74995 * 20 19 18 22 22 F 1.35104 * 119.99587 * 180.02562 * 21 20 19 23 23 C 1.38387 * 120.00557 * 359.97335 * 21 20 19 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 29 29 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 30 30 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 31 31 H 1.08005 * 119.99568 * 0.02562 * 18 17 16 32 32 H 1.08001 * 119.96591 * 180.27829 * 19 18 17 33 33 H 1.08001 * 119.95883 * 179.76968 * 20 19 18 34 34 H 1.07999 * 120.04228 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 8 2.6972 0.1898 4.6816 17 6 3.1315 -0.2943 5.8748 18 6 3.4990 -1.6273 5.9916 19 6 3.9452 -2.1170 7.2036 20 6 4.0160 -1.2832 8.3041 21 6 3.6448 0.0461 8.1928 22 9 3.7152 0.8595 9.2692 23 6 3.2026 0.5419 6.9788 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1611 -3.4845 28 1 2.2490 -1.6316 1.1527 29 1 1.9776 -1.5506 3.8326 30 1 3.6492 -1.1202 3.3980 31 1 3.4403 -2.2808 5.1337 32 1 4.2353 -3.1535 7.2928 33 1 4.3617 -1.6691 9.2517 34 1 2.9133 1.5787 6.8912 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356417986.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:26 Heat of formation + Delta-G solvation = -96.680019 kcal Electronic energy + Delta-G solvation = -19163.893392 eV Core-core repulsion = 15783.703952 eV Total energy + Delta-G solvation = -3380.189439 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.12015 -40.38111 -38.82908 -37.18101 -34.84507 -32.51184 -31.29628 -30.18127 -29.51182 -27.42841 -25.30825 -23.19524 -22.67284 -21.16379 -19.60509 -18.74776 -17.62697 -16.59225 -16.36765 -16.34439 -16.23421 -15.70897 -15.44060 -15.22028 -14.56311 -14.05005 -13.94998 -13.72770 -13.04337 -12.72941 -12.51677 -12.37974 -12.06257 -11.75413 -11.31371 -11.19774 -11.12606 -10.98007 -10.78467 -10.38582 -10.28807 -9.17313 -9.12796 -9.12163 -8.61605 -8.51221 -8.04816 -6.17690 -4.27912 0.88540 1.06033 2.68751 3.16136 3.22169 3.27877 3.28772 3.35675 3.96382 4.20490 4.32786 4.52377 4.71864 4.77214 4.91170 5.10425 5.11107 5.15075 5.15945 5.33117 5.69693 5.83888 5.98139 6.06498 6.46344 6.75600 6.89251 7.07033 7.13377 7.33591 7.47625 7.61834 7.83690 8.08073 8.51278 8.69356 8.96555 9.39470 10.88270 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.047410 B = 0.003187 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.453044 B = 8784.474465 C = 9139.913298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.904 3.096 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.704 5.704 13 C 0.502 3.498 14 O -0.531 6.531 15 C 0.038 3.962 16 O -0.281 6.281 17 C 0.166 3.834 18 C -0.223 4.223 19 C -0.050 4.050 20 C -0.198 4.198 21 C 0.138 3.862 22 F -0.136 7.136 23 C -0.190 4.190 24 H 0.027 0.973 25 H 0.015 0.985 26 H 0.092 0.908 27 H 0.266 0.734 28 H 0.390 0.610 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.264 -7.899 17.247 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.353 5.353 13 C 0.285 3.715 14 O -0.408 6.408 15 C -0.041 4.041 16 O -0.193 6.193 17 C 0.119 3.881 18 C -0.242 4.242 19 C -0.068 4.068 20 C -0.217 4.217 21 C 0.119 3.881 22 F -0.114 7.114 23 C -0.209 4.209 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.110 0.890 27 H 0.076 0.924 28 H 0.222 0.778 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.885 -6.664 17.082 18.976 hybrid contribution 0.467 -1.040 -0.722 1.349 sum 5.353 -7.703 16.360 18.859 Atomic orbital electron populations 1.22096 0.98283 0.99240 1.01093 1.18800 0.91139 0.94050 0.79485 0.93180 1.21157 1.32802 1.13393 0.90226 0.92011 1.24896 0.94740 0.94940 0.99100 1.69891 1.35584 1.22340 1.24139 0.86476 0.79175 0.79551 0.81705 1.21082 1.20131 1.20129 1.46430 1.65327 1.13639 1.09953 1.19824 0.79782 0.87758 0.84130 1.90719 1.49805 1.15647 1.84594 1.22739 1.02849 0.92543 0.85958 1.86216 1.79802 1.37625 1.15616 1.18735 0.92113 0.91653 0.85632 1.21398 1.07802 0.94891 1.00110 1.20771 0.95259 0.99595 0.91156 1.21019 1.07478 0.92332 1.00891 1.17272 0.99532 0.88334 0.82985 1.91514 1.93918 1.72626 1.53358 1.20291 1.08492 1.01951 0.90201 0.95346 0.96551 0.88978 0.92399 0.77752 0.89191 0.89114 0.84526 0.84654 0.84719 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 2 C 0.27 6.62 2.56 -69.09 -0.18 6.44 16 3 H 0.05 1.45 7.58 -51.92 -0.39 1.05 16 4 C -0.54 -13.84 8.73 -34.44 -0.30 -14.14 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.50 11.32 55.43 0.63 -23.87 16 8 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 9 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.70 -13.86 5.07 -54.93 -0.28 -14.14 16 13 C 0.50 9.73 7.87 -10.98 -0.09 9.65 16 14 O -0.53 -12.94 16.16 -14.36 -0.23 -13.17 16 15 C 0.04 0.52 5.22 36.01 0.19 0.70 16 16 O -0.28 -4.39 9.67 -39.33 -0.38 -4.77 16 17 C 0.17 2.12 6.68 -39.23 -0.26 1.86 16 18 C -0.22 -2.22 9.04 -39.43 -0.36 -2.57 16 19 C -0.05 -0.42 10.04 -39.62 -0.40 -0.81 16 20 C -0.20 -1.81 10.02 -39.49 -0.40 -2.21 16 21 C 0.14 1.54 7.30 -39.44 -0.29 1.26 16 22 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 23 C -0.19 -2.35 9.97 -39.37 -0.39 -2.75 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.39 6.29 8.54 -40.82 -0.35 5.94 16 29 H 0.09 0.95 7.65 -51.93 -0.40 0.55 16 30 H 0.09 0.98 7.67 -51.93 -0.40 0.58 16 31 H 0.14 1.07 6.30 -52.48 -0.33 0.74 16 32 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -31.42 302.64 -6.74 -38.16 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -3.84 Total: 3.81 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.22 Total: -4.20 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.35 Total: -38.01 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.61 Total: -17.94 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.42 -6.74 -38.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356417986.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.518 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds