Wall clock time and date at job start Mon Mar 30 2020 00:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 O 1.42905 * 109.46650 * 180.02562 * 15 13 12 17 17 C 1.35896 * 116.99299 * 179.97438 * 16 15 13 18 18 C 1.38769 * 120.04965 * 359.72051 * 17 16 15 19 19 C 1.38125 * 119.99966 * 179.74811 * 18 17 16 20 20 C 1.38250 * 120.07794 * 0.52832 * 19 18 17 21 21 C 1.38471 * 120.08540 * 359.74995 * 20 19 18 22 22 F 1.35104 * 119.99587 * 180.02562 * 21 20 19 23 23 C 1.38387 * 120.00557 * 359.97335 * 21 20 19 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 29 29 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 30 30 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 31 31 H 1.08005 * 119.99568 * 0.02562 * 18 17 16 32 32 H 1.08001 * 119.96591 * 180.27829 * 19 18 17 33 33 H 1.08001 * 119.95883 * 179.76968 * 20 19 18 34 34 H 1.07999 * 120.04228 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 8 2.6972 0.1898 4.6816 17 6 3.1315 -0.2943 5.8748 18 6 3.4990 -1.6273 5.9916 19 6 3.9452 -2.1170 7.2036 20 6 4.0160 -1.2832 8.3041 21 6 3.6448 0.0461 8.1928 22 9 3.7152 0.8595 9.2692 23 6 3.2026 0.5419 6.9788 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1611 -3.4845 28 1 2.2490 -1.6316 1.1527 29 1 1.9776 -1.5506 3.8326 30 1 3.6492 -1.1202 3.3980 31 1 3.4403 -2.2808 5.1337 32 1 4.2353 -3.1535 7.2928 33 1 4.3617 -1.6691 9.2517 34 1 2.9133 1.5787 6.8912 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356417986.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:25 Heat of formation + Delta-G solvation = -117.007705 kcal Electronic energy + Delta-G solvation = -19164.774866 eV Core-core repulsion = 15783.703952 eV Total energy + Delta-G solvation = -3381.070914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.97729 -41.41777 -40.27159 -38.16947 -36.69802 -34.38679 -32.22013 -31.38737 -30.76000 -28.74270 -27.33543 -24.04395 -23.74577 -22.69982 -21.29052 -19.66320 -19.16617 -17.80709 -17.47985 -17.36924 -17.26802 -16.94807 -16.68430 -16.60903 -16.04970 -15.45468 -15.12741 -14.71495 -14.50556 -14.32994 -13.75708 -13.63480 -13.32097 -13.01658 -12.86177 -12.80302 -12.71996 -12.27360 -12.17745 -12.11426 -12.01967 -11.13168 -10.80779 -10.58549 -9.92923 -9.83444 -9.34647 -8.17545 -6.35751 0.10274 0.27094 1.46283 1.48898 1.55925 1.61269 1.66334 2.40389 2.58231 2.77039 3.13323 3.37502 3.66381 3.86907 3.96165 4.06087 4.13222 4.14678 4.30924 4.41585 4.73948 4.90800 5.00552 5.07599 5.08760 5.21876 5.33390 5.40428 5.57071 5.64583 5.70577 5.87845 6.07936 6.26425 6.71556 6.88150 7.30979 7.48578 8.88769 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.047410 B = 0.003187 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.453044 B = 8784.474465 C = 9139.913298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H -0.003 1.003 4 C -0.548 4.548 5 H 0.080 0.920 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.975 3.025 9 H -0.289 1.289 10 H -0.270 1.270 11 H -0.261 1.261 12 N -0.695 5.695 13 C 0.496 3.504 14 O -0.592 6.592 15 C 0.051 3.949 16 O -0.320 6.320 17 C 0.141 3.859 18 C -0.216 4.216 19 C -0.040 4.040 20 C -0.189 4.189 21 C 0.122 3.878 22 F -0.144 7.144 23 C -0.213 4.213 24 H 0.045 0.955 25 H 0.010 0.990 26 H 0.066 0.934 27 H 0.265 0.735 28 H 0.412 0.588 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.165 0.835 32 H 0.177 0.823 33 H 0.161 0.839 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.674 -11.753 17.987 22.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.015 0.985 4 C -0.586 4.586 5 H 0.098 0.902 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.215 1.215 10 H -0.195 1.195 11 H -0.186 1.186 12 N -0.346 5.346 13 C 0.282 3.718 14 O -0.473 6.473 15 C -0.027 4.027 16 O -0.233 6.233 17 C 0.095 3.905 18 C -0.234 4.234 19 C -0.058 4.058 20 C -0.208 4.208 21 C 0.103 3.897 22 F -0.122 7.122 23 C -0.233 4.233 24 H 0.064 0.936 25 H 0.029 0.971 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.248 0.752 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.182 0.818 32 H 0.194 0.806 33 H 0.178 0.822 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.316 -10.575 17.856 21.693 hybrid contribution 0.046 0.178 -0.851 0.870 sum 6.362 -10.397 17.006 20.923 Atomic orbital electron populations 1.21921 0.98232 0.99764 0.99549 1.18374 0.91190 0.91953 0.81725 0.98544 1.21531 1.32762 1.13766 0.90507 0.90211 1.25846 0.94839 0.95562 1.02499 1.70059 1.36967 1.24019 1.24728 0.85355 0.78659 0.78732 0.77336 1.21516 1.19472 1.18595 1.46084 1.65091 1.14500 1.08941 1.20862 0.78263 0.87185 0.85518 1.90693 1.52247 1.18616 1.85699 1.22688 1.05401 0.91716 0.82884 1.86141 1.80961 1.39261 1.16900 1.18900 0.93900 0.93166 0.84486 1.21743 1.06347 0.93564 1.01794 1.21258 0.93419 1.01207 0.89882 1.21411 1.05770 0.91140 1.02485 1.17478 1.00531 0.89369 0.82369 1.91490 1.94086 1.73112 1.53535 1.20354 1.09886 1.01708 0.91353 0.93552 0.97108 0.91503 0.92551 0.75215 0.85209 0.85398 0.81782 0.80582 0.82170 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.79 9.26 71.98 0.67 -6.12 16 2 C 0.27 13.73 2.56 44.24 0.11 13.84 16 3 H 0.00 -0.20 7.58 -2.38 -0.02 -0.22 16 4 C -0.55 -27.97 8.73 25.60 0.22 -27.74 16 5 H 0.08 3.69 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -52.33 11.32 21.45 0.24 -52.08 16 8 Si 0.97 40.80 29.54 68.60 2.03 42.83 16 9 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 12 N -0.70 -26.85 5.07 -446.09 -2.26 -29.12 16 13 C 0.50 19.13 7.87 87.66 0.69 19.82 16 14 O -0.59 -30.15 16.16 16.00 0.26 -29.89 16 15 C 0.05 1.26 5.22 71.24 0.37 1.63 16 16 O -0.32 -9.84 9.67 -73.34 -0.71 -10.55 16 17 C 0.14 3.45 6.68 22.50 0.15 3.60 16 18 C -0.22 -3.45 9.04 22.37 0.20 -3.25 16 19 C -0.04 -0.48 10.04 22.25 0.22 -0.26 16 20 C -0.19 -2.85 10.02 22.33 0.22 -2.63 16 21 C 0.12 2.63 7.30 22.36 0.16 2.79 16 22 F -0.14 -3.31 17.27 44.97 0.78 -2.53 16 23 C -0.21 -5.40 9.97 22.41 0.22 -5.18 16 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 27 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 28 H 0.41 12.21 8.54 -92.71 -0.79 11.42 16 29 H 0.13 2.19 7.65 -2.39 -0.02 2.17 16 30 H 0.13 2.22 7.67 -2.39 -0.02 2.20 16 31 H 0.16 1.64 6.30 -2.91 -0.02 1.62 16 32 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 33 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -73.05 302.64 4.37 -68.68 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.34 Total: 15.06 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 3.70 Total: -2.39 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -2.02 Total: -81.20 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.45 Total: -40.45 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -73.05 4.37 -68.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356417986.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.330 kcal (2) G-P(sol) polarization free energy of solvation -73.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds