Wall clock time and date at job start Mon Mar 30 2020 01:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00454 * 2 1 4 4 C 1.50695 * 109.47405 * 180.02562 * 3 2 1 5 5 C 1.38228 * 120.01194 * 0.27251 * 4 3 2 6 6 C 1.38218 * 120.02359 * 180.23507 * 5 4 3 7 7 C 1.50698 * 119.97171 * 179.76636 * 6 5 4 8 8 N 1.46500 * 109.47467 * 269.72352 * 7 6 5 9 9 C 1.34773 * 120.00431 * 180.02562 * 8 7 6 10 10 O 1.21693 * 119.99830 * 359.97438 * 9 8 7 11 11 C 1.46368 * 120.00188 * 179.72417 * 9 8 7 12 12 H 1.08002 * 119.99624 * 0.27750 * 11 9 8 13 13 C 1.40052 * 119.99965 * 180.27115 * 11 9 8 14 14 N 1.30664 * 120.00038 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99598 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47344 * 60.00498 * 15 13 11 17 17 H 1.48508 * 109.46757 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47214 * 299.99964 * 15 13 11 19 19 C 1.38268 * 120.05244 * 359.48888 * 6 5 4 20 20 C 1.38175 * 120.02545 * 0.25690 * 19 6 5 21 21 C 1.38434 * 120.01365 * 179.97438 * 4 3 2 22 22 F 1.35096 * 120.02677 * 0.04808 * 21 4 3 23 23 H 1.09002 * 109.46851 * 300.00223 * 1 2 3 24 24 H 1.09003 * 109.46939 * 59.99839 * 1 2 3 25 25 H 1.08996 * 109.47336 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47091 * 59.99656 * 3 2 1 27 27 H 1.09009 * 109.46756 * 299.99957 * 3 2 1 28 28 H 1.08003 * 119.98516 * 359.97438 * 5 4 3 29 29 H 1.09009 * 109.46852 * 149.72233 * 7 6 5 30 30 H 1.08998 * 109.47607 * 29.72964 * 7 6 5 31 31 H 0.97000 * 119.99456 * 359.97438 * 8 7 6 32 32 H 0.96999 * 119.99868 * 179.97438 * 14 13 11 33 33 H 1.08002 * 119.98896 * 180.27614 * 19 6 5 34 34 H 1.07998 * 120.01149 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1073 -0.0614 -0.0068 6 6 5.4851 -0.1709 -0.0025 7 6 6.1322 -1.5319 -0.0039 8 7 6.3433 -1.9738 1.3769 9 6 6.9130 -3.1704 1.6219 10 8 7.2516 -3.8840 0.6962 11 6 7.1294 -3.6091 3.0014 12 1 6.8284 -2.9759 3.8229 13 6 7.7266 -4.8501 3.2560 14 7 8.0910 -5.6160 2.2620 15 14 8.0020 -5.4103 5.0166 16 1 6.6971 -5.4890 5.7210 17 1 8.6458 -6.7487 5.0151 18 1 8.8829 -4.4387 5.7131 19 6 6.2702 0.9673 -0.0027 20 6 5.6780 2.2157 -0.0018 21 6 4.2976 2.3266 -0.0013 22 9 3.7175 3.5467 -0.0004 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8899 27 1 1.6887 1.8463 -0.8901 28 1 3.4950 -0.9512 -0.0107 29 1 7.0915 -1.4776 -0.5187 30 1 5.4840 -2.2419 -0.5175 31 1 6.0737 -1.4047 2.1147 32 1 8.5049 -6.4753 2.4384 33 1 7.3467 0.8805 -0.0038 34 1 6.2914 3.1045 -0.0024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356600319.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:46 Heat of formation + Delta-G solvation = -109.873322 kcal Electronic energy + Delta-G solvation = -19350.196627 eV Core-core repulsion = 15969.435083 eV Total energy + Delta-G solvation = -3380.761544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.97510 -39.51203 -37.88191 -37.02420 -33.69794 -32.39094 -31.99350 -30.41888 -27.47893 -26.77587 -25.67589 -24.69442 -22.30298 -20.83892 -19.63031 -17.68468 -17.31208 -16.97698 -16.27686 -15.86431 -15.54595 -15.47799 -15.26703 -14.65394 -14.20345 -14.00741 -13.64794 -13.54683 -13.09430 -12.86299 -12.72058 -12.28679 -11.95910 -11.63990 -11.38089 -11.18743 -11.00272 -10.99301 -10.79058 -10.42937 -10.23743 -10.06038 -8.89928 -8.82932 -8.58666 -7.57790 -7.50134 -6.16683 -4.62376 1.09547 1.25669 3.17577 3.22227 3.24213 3.45170 3.54315 4.13857 4.22958 4.56410 4.61122 4.82486 4.88759 5.03250 5.06995 5.12580 5.20394 5.25139 5.32284 5.43778 5.50826 5.71150 5.87183 6.01621 6.13816 6.20857 6.31131 6.42543 6.75378 6.90994 6.95397 7.45165 7.94120 8.08956 8.34311 9.04089 9.54509 10.61456 10.79713 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.004104 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.618301 B = 6821.021728 C = 7370.839104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.109 3.891 4 C -0.129 4.129 5 C -0.053 4.053 6 C -0.096 4.096 7 C 0.170 3.830 8 N -0.763 5.763 9 C 0.555 3.445 10 O -0.581 6.581 11 C -0.545 4.545 12 H 0.067 0.933 13 C 0.088 3.912 14 N -0.768 5.768 15 Si 0.908 3.092 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.268 1.268 19 C -0.076 4.076 20 C -0.154 4.154 21 C 0.094 3.906 22 F -0.143 7.143 23 H 0.042 0.958 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.144 0.856 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.381 0.619 32 H 0.269 0.731 33 H 0.135 0.865 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.970 15.142 -3.368 18.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.032 3.968 4 C -0.130 4.130 5 C -0.072 4.072 6 C -0.096 4.096 7 C 0.046 3.954 8 N -0.419 5.419 9 C 0.359 3.641 10 O -0.464 6.464 11 C -0.582 4.582 12 H 0.085 0.915 13 C -0.132 4.132 14 N -0.397 5.397 15 Si 0.733 3.267 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.094 4.094 20 C -0.172 4.172 21 C 0.075 3.925 22 F -0.122 7.122 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.162 0.838 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.213 0.787 32 H 0.079 0.921 33 H 0.153 0.847 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.540 14.289 -4.142 18.232 hybrid contribution -0.327 0.582 1.225 1.395 sum -10.868 14.871 -2.917 18.648 Atomic orbital electron populations 1.22766 0.80554 1.03162 0.99948 1.87896 1.19944 1.26831 1.95452 1.21055 0.89535 0.85309 1.00873 1.19621 0.94553 0.92910 1.05931 1.20892 0.93992 0.96894 0.95378 1.20343 0.93483 0.96270 0.99536 1.19802 0.98800 0.89082 0.87721 1.46201 1.69131 1.22178 1.04349 1.18234 0.76809 0.78475 0.90579 1.90603 1.54906 1.54412 1.46434 1.20844 1.42706 1.03693 0.90943 0.91462 1.25697 0.93404 0.95953 0.98111 1.70007 1.29180 1.08677 1.31848 0.86436 0.79139 0.78107 0.83061 1.19285 1.20564 1.19301 1.21051 1.00613 0.90771 0.96996 1.21034 0.92336 0.99229 1.04638 1.17366 0.91241 0.79061 1.04855 1.91459 1.84915 1.41741 1.94101 0.93934 0.94027 0.89206 0.91801 0.91890 0.83840 0.92263 0.92209 0.78737 0.92054 0.84679 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.69 9.18 -35.23 -0.32 -5.02 16 3 C 0.11 1.23 5.91 36.00 0.21 1.44 16 4 C -0.13 -1.71 5.89 -104.56 -0.62 -2.32 16 5 C -0.05 -0.78 9.03 -39.59 -0.36 -1.14 16 6 C -0.10 -1.47 5.25 -104.62 -0.55 -2.02 16 7 C 0.17 3.28 5.80 -5.19 -0.03 3.25 16 8 N -0.76 -17.14 5.54 -62.90 -0.35 -17.49 16 9 C 0.55 15.85 7.75 -12.99 -0.10 15.75 16 10 O -0.58 -18.86 15.02 5.20 0.08 -18.78 16 11 C -0.54 -15.47 9.54 -35.63 -0.34 -15.81 16 12 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 13 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 14 N -0.77 -23.13 11.83 55.55 0.66 -22.47 16 15 Si 0.91 20.20 29.56 -169.99 -5.02 15.18 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 C -0.08 -1.01 9.70 -39.59 -0.38 -1.40 16 20 C -0.15 -1.86 10.03 -39.51 -0.40 -2.25 16 21 C 0.09 1.20 7.25 -39.42 -0.29 0.92 16 22 F -0.14 -1.77 16.80 2.25 0.04 -1.73 16 23 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.14 2.20 7.01 -52.48 -0.37 1.84 16 29 H 0.06 1.17 8.09 -51.92 -0.42 0.75 16 30 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 31 H 0.38 7.72 8.44 -40.82 -0.34 7.38 16 32 H 0.27 7.34 8.29 -40.82 -0.34 7.01 16 33 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 306.48 15.07 4.62 4.62 Total: -1.00 -34.14 306.48 -6.19 -40.33 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.06 Total: 5.19 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.83 Total: 0.18 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.31 Total: -39.96 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.25 Total: -23.80 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.14 -6.19 -40.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356600319.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.542 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds