Wall clock time and date at job start Mon Mar 30 2020 01:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00454 * 2 1 4 4 C 1.50695 * 109.47405 * 180.02562 * 3 2 1 5 5 C 1.38228 * 120.01194 * 0.27251 * 4 3 2 6 6 C 1.38218 * 120.02359 * 180.23507 * 5 4 3 7 7 C 1.50698 * 119.97171 * 179.76636 * 6 5 4 8 8 N 1.46500 * 109.47467 * 269.72352 * 7 6 5 9 9 C 1.34773 * 120.00431 * 180.02562 * 8 7 6 10 10 O 1.21693 * 119.99830 * 359.97438 * 9 8 7 11 11 C 1.46368 * 120.00188 * 179.72417 * 9 8 7 12 12 H 1.08002 * 119.99624 * 0.27750 * 11 9 8 13 13 C 1.40052 * 119.99965 * 180.27115 * 11 9 8 14 14 N 1.30664 * 120.00038 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99598 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47344 * 60.00498 * 15 13 11 17 17 H 1.48508 * 109.46757 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47214 * 299.99964 * 15 13 11 19 19 C 1.38268 * 120.05244 * 359.48888 * 6 5 4 20 20 C 1.38175 * 120.02545 * 0.25690 * 19 6 5 21 21 C 1.38434 * 120.01365 * 179.97438 * 4 3 2 22 22 F 1.35096 * 120.02677 * 0.04808 * 21 4 3 23 23 H 1.09002 * 109.46851 * 300.00223 * 1 2 3 24 24 H 1.09003 * 109.46939 * 59.99839 * 1 2 3 25 25 H 1.08996 * 109.47336 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47091 * 59.99656 * 3 2 1 27 27 H 1.09009 * 109.46756 * 299.99957 * 3 2 1 28 28 H 1.08003 * 119.98516 * 359.97438 * 5 4 3 29 29 H 1.09009 * 109.46852 * 149.72233 * 7 6 5 30 30 H 1.08998 * 109.47607 * 29.72964 * 7 6 5 31 31 H 0.97000 * 119.99456 * 359.97438 * 8 7 6 32 32 H 0.96999 * 119.99868 * 179.97438 * 14 13 11 33 33 H 1.08002 * 119.98896 * 180.27614 * 19 6 5 34 34 H 1.07998 * 120.01149 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1073 -0.0614 -0.0068 6 6 5.4851 -0.1709 -0.0025 7 6 6.1322 -1.5319 -0.0039 8 7 6.3433 -1.9738 1.3769 9 6 6.9130 -3.1704 1.6219 10 8 7.2516 -3.8840 0.6962 11 6 7.1294 -3.6091 3.0014 12 1 6.8284 -2.9759 3.8229 13 6 7.7266 -4.8501 3.2560 14 7 8.0910 -5.6160 2.2620 15 14 8.0020 -5.4103 5.0166 16 1 6.6971 -5.4890 5.7210 17 1 8.6458 -6.7487 5.0151 18 1 8.8829 -4.4387 5.7131 19 6 6.2702 0.9673 -0.0027 20 6 5.6780 2.2157 -0.0018 21 6 4.2976 2.3266 -0.0013 22 9 3.7175 3.5467 -0.0004 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8899 27 1 1.6887 1.8463 -0.8901 28 1 3.4950 -0.9512 -0.0107 29 1 7.0915 -1.4776 -0.5187 30 1 5.4840 -2.2419 -0.5175 31 1 6.0737 -1.4047 2.1147 32 1 8.5049 -6.4753 2.4384 33 1 7.3467 0.8805 -0.0038 34 1 6.2914 3.1045 -0.0024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356600319.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:45 Heat of formation + Delta-G solvation = -133.754385 kcal Electronic energy + Delta-G solvation = -19351.232188 eV Core-core repulsion = 15969.435083 eV Total energy + Delta-G solvation = -3381.797105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.97149 -40.64532 -39.27701 -38.56791 -35.45805 -34.48467 -33.09010 -31.89451 -28.78146 -28.23685 -26.68712 -26.21056 -23.35332 -22.15486 -21.57258 -19.32211 -18.65937 -17.96035 -17.49059 -17.15017 -16.87614 -16.55237 -16.38860 -16.11970 -15.90839 -15.37493 -15.07435 -14.87235 -14.26210 -14.24382 -13.89017 -13.68122 -13.22826 -13.19289 -12.85781 -12.67201 -12.65402 -12.52910 -12.12626 -12.02503 -11.97798 -10.90755 -10.87043 -10.05080 -9.88853 -9.52708 -9.49634 -8.27567 -6.84841 -0.00349 0.20109 1.41684 1.45152 1.56878 2.25310 2.44133 2.48095 2.65113 3.19179 3.32572 3.56418 3.64740 3.72590 3.86052 4.12751 4.26092 4.33335 4.38571 4.50809 4.56705 4.58438 4.75434 4.85679 4.90518 4.99106 5.09362 5.20520 5.32913 5.55294 5.82702 5.87992 6.15835 6.19810 6.26537 6.87633 7.53567 8.49001 8.67890 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.004104 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.618301 B = 6821.021728 C = 7370.839104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.107 3.893 4 C -0.131 4.131 5 C -0.061 4.061 6 C -0.106 4.106 7 C 0.176 3.824 8 N -0.749 5.749 9 C 0.538 3.462 10 O -0.632 6.632 11 C -0.574 4.574 12 H 0.087 0.913 13 C 0.030 3.970 14 N -0.821 5.821 15 Si 0.998 3.002 16 H -0.255 1.255 17 H -0.274 1.274 18 H -0.254 1.254 19 C -0.074 4.074 20 C -0.142 4.142 21 C 0.098 3.902 22 F -0.137 7.137 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.394 0.606 32 H 0.275 0.725 33 H 0.146 0.854 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.579 17.116 -1.797 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.031 3.969 4 C -0.132 4.132 5 C -0.080 4.080 6 C -0.107 4.107 7 C 0.052 3.948 8 N -0.404 5.404 9 C 0.342 3.658 10 O -0.519 6.519 11 C -0.610 4.610 12 H 0.105 0.895 13 C -0.185 4.185 14 N -0.451 5.451 15 Si 0.817 3.183 16 H -0.179 1.179 17 H -0.198 1.198 18 H -0.178 1.178 19 C -0.093 4.093 20 C -0.161 4.161 21 C 0.079 3.921 22 F -0.116 7.116 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.148 0.852 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.227 0.773 32 H 0.085 0.915 33 H 0.164 0.836 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.187 16.329 -2.570 19.960 hybrid contribution -0.220 0.073 0.661 0.700 sum -11.408 16.402 -1.909 20.070 Atomic orbital electron populations 1.22959 0.78809 1.03960 1.01292 1.87865 1.21970 1.27546 1.95694 1.21163 0.88219 0.85326 1.02190 1.19811 0.95939 0.92347 1.05096 1.20742 0.93526 0.97329 0.96354 1.19953 0.93850 0.94656 1.02250 1.19740 0.98363 0.91160 0.85509 1.45858 1.67489 1.20691 1.06320 1.18621 0.76883 0.79642 0.90610 1.90555 1.57201 1.56410 1.47753 1.21398 1.43273 1.04850 0.91498 0.89503 1.26967 0.92205 0.95574 1.03803 1.70177 1.30162 1.09450 1.35302 0.85068 0.79675 0.77820 0.75699 1.17928 1.19845 1.17767 1.21133 1.01027 0.90561 0.96565 1.21289 0.92353 0.99574 1.02836 1.17436 0.91522 0.79065 1.04088 1.91481 1.84874 1.41254 1.93951 0.92702 0.92513 0.88810 0.90499 0.90293 0.85249 0.93128 0.94061 0.77292 0.91517 0.83641 0.81672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -9.75 9.18 -148.98 -1.37 -11.12 16 3 C 0.11 2.23 5.91 71.23 0.42 2.65 16 4 C -0.13 -3.27 5.89 -19.82 -0.12 -3.39 16 5 C -0.06 -1.79 9.03 22.26 0.20 -1.58 16 6 C -0.11 -3.26 5.25 -19.86 -0.10 -3.37 16 7 C 0.18 7.04 5.80 85.63 0.50 7.54 16 8 N -0.75 -34.52 5.54 -471.14 -2.61 -37.13 16 9 C 0.54 31.74 7.75 86.36 0.67 32.41 16 10 O -0.63 -42.95 15.02 -4.33 -0.06 -43.01 16 11 C -0.57 -32.90 9.54 24.83 0.24 -32.66 16 12 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 13 C 0.03 1.67 5.50 85.31 0.47 2.14 16 14 N -0.82 -50.70 11.83 21.84 0.26 -50.45 16 15 Si 1.00 41.10 29.56 68.60 2.03 43.13 16 16 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 17 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 18 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 19 C -0.07 -1.87 9.70 22.26 0.22 -1.66 16 20 C -0.14 -3.02 10.03 22.31 0.22 -2.80 16 21 C 0.10 2.25 7.25 22.38 0.16 2.41 16 22 F -0.14 -2.94 16.80 44.97 0.76 -2.19 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.13 4.13 7.01 -2.91 -0.02 4.11 16 29 H 0.05 2.09 8.09 -2.38 -0.02 2.07 16 30 H 0.04 1.78 8.08 -2.39 -0.02 1.76 16 31 H 0.39 16.03 8.44 -92.71 -0.78 15.25 16 32 H 0.27 15.36 8.29 -92.71 -0.77 14.60 16 33 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -75.85 306.48 3.46 -72.38 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.34 Total: 25.04 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 4.12 Total: 3.34 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -2.35 Total: -87.58 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -1.43 Total: -54.13 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.76 Total: -2.19 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -75.85 3.46 -72.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356600319.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.372 kcal (2) G-P(sol) polarization free energy of solvation -75.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds