Wall clock time and date at job start Mon Mar 30 2020 00:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35953 * 116.99764 * 2 1 4 4 C 1.38731 * 120.02778 * 359.72621 * 3 2 1 5 5 C 1.38125 * 119.96470 * 179.69871 * 4 3 2 6 6 C 1.38479 * 120.03487 * 0.57355 * 5 4 3 7 7 F 1.35094 * 119.97342 * 179.74247 * 6 5 4 8 8 C 1.38438 * 120.05509 * 359.72543 * 6 5 4 9 9 C 1.38174 * 120.03137 * 359.97438 * 8 6 5 10 10 C 1.50701 * 120.01545 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.47130 * 265.02494 * 10 9 8 12 12 O 1.21286 * 119.99794 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00002 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00009 * 359.97438 * 13 11 10 15 15 C 1.37092 * 119.99911 * 179.97438 * 13 11 10 16 16 H 1.08009 * 119.99956 * 322.82823 * 15 13 11 17 17 C 1.38949 * 120.00093 * 142.81999 * 15 13 11 18 18 N 1.31412 * 119.99537 * 158.40572 * 17 15 13 19 19 Si 1.86801 * 120.00033 * 338.41525 * 17 15 13 20 20 H 1.48497 * 109.47025 * 95.71671 * 19 17 15 21 21 H 1.48497 * 109.46708 * 215.71626 * 19 17 15 22 22 H 1.48494 * 109.46941 * 335.71385 * 19 17 15 23 23 H 1.08992 * 109.47534 * 299.99825 * 1 2 3 24 24 H 1.09004 * 109.47121 * 60.00295 * 1 2 3 25 25 H 1.09004 * 109.46757 * 179.97438 * 1 2 3 26 26 H 1.07990 * 120.01708 * 359.97358 * 4 3 2 27 27 H 1.07998 * 119.98555 * 180.27565 * 5 4 3 28 28 H 1.07997 * 119.98325 * 180.02562 * 8 6 5 29 29 H 1.08999 * 109.47136 * 25.02169 * 10 9 8 30 30 H 1.08997 * 109.47309 * 145.01710 * 10 9 8 31 31 H 1.08999 * 109.46898 * 85.13400 * 14 13 11 32 32 H 1.08989 * 109.46891 * 205.13867 * 14 13 11 33 33 H 1.09005 * 109.47082 * 325.13837 * 14 13 11 34 34 H 0.97001 * 119.99381 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2911 2.3752 -0.0057 5 6 1.9194 3.6053 0.0006 6 6 3.3023 3.6771 0.0006 7 9 3.9156 4.8809 0.0015 8 6 4.0570 2.5165 0.0001 9 6 3.4310 1.2847 0.0000 10 6 4.2528 0.0215 0.0000 11 6 4.4235 -0.4668 -1.4154 12 8 3.9263 0.1501 -2.3338 13 7 5.1278 -1.5894 -1.6607 14 6 5.7279 -2.3348 -0.5514 15 6 5.2826 -2.0338 -2.9484 16 1 4.4705 -1.9384 -3.6539 17 6 6.4844 -2.6069 -3.3458 18 7 6.5197 -3.3993 -4.3935 19 14 8.0498 -2.2512 -2.3905 20 1 8.2848 -3.3357 -1.4037 21 1 9.1975 -2.1796 -3.3301 22 1 7.9115 -0.9554 -1.6785 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2126 2.3195 -0.0106 27 1 1.3319 4.5115 0.0006 28 1 5.1354 2.5739 0.0005 29 1 5.2315 0.2247 0.4347 30 1 3.7452 -0.7422 0.5892 31 1 4.9895 -3.0173 -0.1308 32 1 6.5826 -2.9040 -0.9165 33 1 6.0580 -1.6373 0.2185 34 1 7.3586 -3.7996 -4.6707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359500292.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:09 Heat of formation + Delta-G solvation = -74.408794 kcal Electronic energy + Delta-G solvation = -20304.735327 eV Core-core repulsion = 16925.511640 eV Total energy + Delta-G solvation = -3379.223687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.67623 -40.20828 -38.49231 -37.06165 -34.75760 -32.68920 -31.91252 -29.73741 -28.06108 -27.01723 -26.32810 -24.50396 -22.27859 -21.73976 -18.93832 -17.88853 -17.02824 -16.92960 -16.80686 -16.14469 -15.67622 -15.31696 -15.25680 -14.62133 -14.53473 -14.30245 -13.67053 -13.23179 -12.90728 -12.69635 -12.50180 -12.43722 -12.31637 -12.08303 -11.80548 -11.62741 -11.24286 -10.83315 -10.76163 -10.69874 -10.32534 -9.89470 -9.05793 -8.96669 -8.42709 -7.88182 -7.68964 -6.35862 -3.92106 1.26409 1.36494 3.04867 3.23949 3.28003 3.34609 3.65273 3.80424 4.17617 4.38204 4.56635 4.73282 4.79488 5.03645 5.05915 5.15666 5.17251 5.36048 5.48477 5.59360 5.65290 5.70498 5.82697 5.86367 6.10314 6.15358 6.20138 6.21775 6.32531 6.50910 6.83208 7.44363 7.59059 8.32916 8.56205 9.01749 9.36285 9.83170 10.76554 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.023057 B = 0.005841 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.074263 B = 4792.481459 C = 5469.103996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.304 6.304 3 C 0.135 3.865 4 C -0.183 4.183 5 C -0.121 4.121 6 C 0.058 3.942 7 F -0.145 7.145 8 C -0.105 4.105 9 C -0.050 4.050 10 C -0.096 4.096 11 C 0.472 3.528 12 O -0.558 6.558 13 N -0.474 5.474 14 C 0.064 3.936 15 C -0.313 4.313 16 H 0.104 0.896 17 C 0.057 3.943 18 N -0.866 5.866 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.265 1.265 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.139 0.861 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 8.006 13.745 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.217 6.217 3 C 0.090 3.910 4 C -0.202 4.202 5 C -0.140 4.140 6 C 0.039 3.961 7 F -0.124 7.124 8 C -0.124 4.124 9 C -0.052 4.052 10 C -0.137 4.137 11 C 0.260 3.740 12 O -0.439 6.439 13 N -0.196 5.196 14 C -0.080 4.080 15 C -0.440 4.440 16 H 0.122 0.878 17 C -0.148 4.148 18 N -0.503 5.503 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.189 1.189 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.153 0.847 27 H 0.151 0.849 28 H 0.157 0.843 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.071 8.023 13.123 17.370 hybrid contribution 0.847 0.360 0.358 0.987 sum -7.224 8.383 13.481 17.441 Atomic orbital electron populations 1.23057 0.78669 1.04032 1.01011 1.86153 1.21049 1.26280 1.88227 1.18761 0.91650 0.84437 0.96196 1.20964 1.00075 0.91334 1.07797 1.20781 0.92582 0.98441 1.02184 1.17442 0.90801 0.80371 1.07512 1.91459 1.83414 1.43036 1.94487 1.20816 1.00646 0.90090 1.00821 1.18593 0.90416 0.94551 1.01610 1.20592 0.99864 0.94989 0.98210 1.20019 0.83696 0.80992 0.89307 1.90566 1.50674 1.56487 1.46145 1.43656 1.48748 1.20747 1.06473 1.21996 0.98880 0.96610 0.90496 1.19046 1.00436 1.37828 0.86698 0.87816 1.25376 0.98020 0.95331 0.96110 1.69760 1.27405 1.26710 1.26435 0.86919 0.83375 0.79376 0.79532 1.20314 1.21520 1.18934 0.92911 0.92593 0.88211 0.84726 0.84880 0.84283 0.89049 0.88431 0.92958 0.91687 0.92772 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.30 -4.76 9.63 -19.59 -0.19 -4.95 16 3 C 0.14 2.17 6.66 -39.24 -0.26 1.91 16 4 C -0.18 -2.43 9.04 -39.44 -0.36 -2.79 16 5 C -0.12 -1.60 10.02 -39.53 -0.40 -1.99 16 6 C 0.06 0.87 7.30 -39.42 -0.29 0.59 16 7 F -0.15 -2.17 17.27 2.25 0.04 -2.14 16 8 C -0.10 -1.68 9.66 -39.53 -0.38 -2.06 16 9 C -0.05 -0.87 4.39 -104.48 -0.46 -1.32 16 10 C -0.10 -1.70 4.17 -29.03 -0.12 -1.82 16 11 C 0.47 11.20 7.62 -10.98 -0.08 11.12 16 12 O -0.56 -15.50 15.90 5.55 0.09 -15.41 16 13 N -0.47 -11.70 2.59 -122.19 -0.32 -12.01 16 14 C 0.06 1.26 8.78 59.85 0.53 1.78 16 15 C -0.31 -9.07 9.37 -14.94 -0.14 -9.21 16 16 H 0.10 3.39 7.90 -52.48 -0.41 2.97 16 17 C 0.06 1.60 5.29 -17.47 -0.09 1.51 16 18 N -0.87 -25.44 13.96 55.50 0.77 -24.66 16 19 Si 0.88 20.76 24.96 -169.99 -4.24 16.52 16 20 H -0.28 -6.01 6.69 56.52 0.38 -5.63 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 23 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 24 H 0.06 0.56 7.65 -51.93 -0.40 0.17 16 25 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.14 1.37 6.30 -52.49 -0.33 1.04 16 27 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 28 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.09 1.37 7.32 -51.93 -0.38 0.99 16 30 H 0.10 1.54 7.65 -51.93 -0.40 1.15 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.36 3.42 -51.94 -0.18 1.18 16 33 H 0.05 0.87 6.64 -51.93 -0.34 0.52 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 292.58 15.07 4.41 4.41 Total: -1.00 -34.29 292.58 -4.19 -38.48 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -3.69 Total: 0.78 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.06 Total: -1.01 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.46 Total: -36.68 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.10 Total: -20.36 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.24 Total: 16.52 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.29 -4.19 -38.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359500292.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.932 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds