Wall clock time and date at job start Mon Mar 30 2020 00:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35953 * 116.99764 * 2 1 4 4 C 1.38731 * 120.02778 * 359.72621 * 3 2 1 5 5 C 1.38125 * 119.96470 * 179.69871 * 4 3 2 6 6 C 1.38479 * 120.03487 * 0.57355 * 5 4 3 7 7 F 1.35094 * 119.97342 * 179.74247 * 6 5 4 8 8 C 1.38438 * 120.05509 * 359.72543 * 6 5 4 9 9 C 1.38174 * 120.03137 * 359.97438 * 8 6 5 10 10 C 1.50701 * 120.01545 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.47130 * 265.02494 * 10 9 8 12 12 O 1.21286 * 119.99794 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00002 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00009 * 359.97438 * 13 11 10 15 15 C 1.37092 * 119.99911 * 179.97438 * 13 11 10 16 16 H 1.08009 * 119.99956 * 322.82823 * 15 13 11 17 17 C 1.38949 * 120.00093 * 142.81999 * 15 13 11 18 18 N 1.31412 * 119.99537 * 158.40572 * 17 15 13 19 19 Si 1.86801 * 120.00033 * 338.41525 * 17 15 13 20 20 H 1.48497 * 109.47025 * 95.71671 * 19 17 15 21 21 H 1.48497 * 109.46708 * 215.71626 * 19 17 15 22 22 H 1.48494 * 109.46941 * 335.71385 * 19 17 15 23 23 H 1.08992 * 109.47534 * 299.99825 * 1 2 3 24 24 H 1.09004 * 109.47121 * 60.00295 * 1 2 3 25 25 H 1.09004 * 109.46757 * 179.97438 * 1 2 3 26 26 H 1.07990 * 120.01708 * 359.97358 * 4 3 2 27 27 H 1.07998 * 119.98555 * 180.27565 * 5 4 3 28 28 H 1.07997 * 119.98325 * 180.02562 * 8 6 5 29 29 H 1.08999 * 109.47136 * 25.02169 * 10 9 8 30 30 H 1.08997 * 109.47309 * 145.01710 * 10 9 8 31 31 H 1.08999 * 109.46898 * 85.13400 * 14 13 11 32 32 H 1.08989 * 109.46891 * 205.13867 * 14 13 11 33 33 H 1.09005 * 109.47082 * 325.13837 * 14 13 11 34 34 H 0.97001 * 119.99381 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2911 2.3752 -0.0057 5 6 1.9194 3.6053 0.0006 6 6 3.3023 3.6771 0.0006 7 9 3.9156 4.8809 0.0015 8 6 4.0570 2.5165 0.0001 9 6 3.4310 1.2847 0.0000 10 6 4.2528 0.0215 0.0000 11 6 4.4235 -0.4668 -1.4154 12 8 3.9263 0.1501 -2.3338 13 7 5.1278 -1.5894 -1.6607 14 6 5.7279 -2.3348 -0.5514 15 6 5.2826 -2.0338 -2.9484 16 1 4.4705 -1.9384 -3.6539 17 6 6.4844 -2.6069 -3.3458 18 7 6.5197 -3.3993 -4.3935 19 14 8.0498 -2.2512 -2.3905 20 1 8.2848 -3.3357 -1.4037 21 1 9.1975 -2.1796 -3.3301 22 1 7.9115 -0.9554 -1.6785 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2126 2.3195 -0.0106 27 1 1.3319 4.5115 0.0006 28 1 5.1354 2.5739 0.0005 29 1 5.2315 0.2247 0.4347 30 1 3.7452 -0.7422 0.5892 31 1 4.9895 -3.0173 -0.1308 32 1 6.5826 -2.9040 -0.9165 33 1 6.0580 -1.6373 0.2185 34 1 7.3586 -3.7996 -4.6707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359500292.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:08 Heat of formation + Delta-G solvation = -98.338872 kcal Electronic energy + Delta-G solvation = -20305.773013 eV Core-core repulsion = 16925.511640 eV Total energy + Delta-G solvation = -3380.261373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.80932 -41.40020 -40.20165 -38.17960 -36.67939 -34.27076 -33.70941 -30.84481 -29.41021 -28.11548 -27.89985 -26.35907 -23.40058 -22.98582 -20.67284 -19.05742 -18.95822 -18.14030 -17.99170 -17.81431 -17.28503 -16.66089 -16.32909 -16.18070 -15.65774 -15.54828 -15.30811 -14.69222 -14.42125 -14.15377 -14.04346 -13.92037 -13.66203 -13.48095 -13.10661 -12.81508 -12.73597 -12.51090 -12.25165 -11.83395 -11.82113 -11.74290 -11.04751 -10.47721 -9.96065 -9.68089 -9.01961 -8.50718 -6.13031 0.14913 0.23613 1.20712 1.33979 1.46527 1.99683 2.18971 2.34168 2.48856 2.85451 3.02494 3.29977 3.61344 3.73965 4.04325 4.12154 4.17569 4.35188 4.37902 4.42047 4.43893 4.46021 4.66437 4.73266 4.74210 4.83894 4.90797 5.11394 5.12541 5.33197 5.54565 5.74749 6.03920 6.41082 6.58649 6.96234 7.31901 7.91126 8.67006 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.023057 B = 0.005841 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.074263 B = 4792.481459 C = 5469.103996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.122 3.878 4 C -0.179 4.179 5 C -0.111 4.111 6 C 0.041 3.959 7 F -0.148 7.148 8 C -0.115 4.115 9 C -0.084 4.084 10 C -0.081 4.081 11 C 0.465 3.535 12 O -0.611 6.611 13 N -0.487 5.487 14 C 0.056 3.944 15 C -0.335 4.335 16 H 0.039 0.961 17 C 0.007 3.993 18 N -0.914 5.914 19 Si 0.956 3.044 20 H -0.237 1.237 21 H -0.292 1.292 22 H -0.256 1.256 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.112 0.888 26 H 0.168 0.832 27 H 0.165 0.835 28 H 0.145 0.855 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.750 8.836 16.793 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.076 3.924 4 C -0.198 4.198 5 C -0.130 4.130 6 C 0.022 3.978 7 F -0.126 7.126 8 C -0.134 4.134 9 C -0.085 4.085 10 C -0.120 4.120 11 C 0.256 3.744 12 O -0.496 6.496 13 N -0.210 5.210 14 C -0.086 4.086 15 C -0.463 4.463 16 H 0.057 0.943 17 C -0.194 4.194 18 N -0.552 5.552 19 Si 0.779 3.221 20 H -0.162 1.162 21 H -0.219 1.219 22 H -0.180 1.180 23 H 0.100 0.900 24 H 0.076 0.924 25 H 0.130 0.870 26 H 0.185 0.815 27 H 0.183 0.817 28 H 0.163 0.837 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.803 8.829 16.212 20.042 hybrid contribution 0.574 0.114 -0.659 0.881 sum -7.229 8.943 15.553 19.343 Atomic orbital electron populations 1.23377 0.76356 1.05514 1.02486 1.86103 1.23611 1.26597 1.88233 1.19039 0.91785 0.85448 0.96139 1.21336 1.01659 0.90399 1.06387 1.21178 0.92063 0.99724 1.00010 1.17639 0.91701 0.80081 1.08375 1.91450 1.83599 1.43002 1.94596 1.20962 1.01231 0.90311 1.00871 1.18704 0.91273 0.94531 1.03973 1.20503 1.02080 0.95806 0.93642 1.21108 0.81710 0.80064 0.91565 1.90523 1.52409 1.58008 1.48627 1.43813 1.49407 1.21754 1.06029 1.22265 0.98973 0.97693 0.89645 1.18633 0.99603 1.39530 0.88489 0.94317 1.26231 1.01542 0.94165 0.97512 1.69883 1.28756 1.27805 1.28755 0.85736 0.77199 0.80560 0.78617 1.16162 1.21891 1.17955 0.89984 0.92409 0.86951 0.81468 0.81708 0.83714 0.85939 0.86431 0.90716 0.92613 0.88285 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -10.00 9.63 -93.03 -0.90 -10.89 16 3 C 0.12 3.73 6.66 22.49 0.15 3.88 16 4 C -0.18 -4.32 9.04 22.36 0.20 -4.11 16 5 C -0.11 -2.64 10.02 22.30 0.22 -2.42 16 6 C 0.04 1.18 7.30 22.37 0.16 1.34 16 7 F -0.15 -4.21 17.27 44.97 0.78 -3.43 16 8 C -0.11 -3.55 9.66 22.30 0.22 -3.34 16 9 C -0.08 -2.77 4.39 -19.77 -0.09 -2.85 16 10 C -0.08 -2.70 4.17 29.10 0.12 -2.58 16 11 C 0.47 22.19 7.62 87.66 0.67 22.86 16 12 O -0.61 -35.33 15.90 -3.05 -0.05 -35.38 16 13 N -0.49 -24.08 2.59 -658.90 -1.70 -25.78 16 14 C 0.06 2.05 8.78 127.77 1.12 3.17 16 15 C -0.33 -20.25 9.37 84.04 0.79 -19.46 16 16 H 0.04 2.76 7.90 -2.91 -0.02 2.74 16 17 C 0.01 0.40 5.29 84.93 0.45 0.85 16 18 N -0.91 -55.51 13.96 21.66 0.30 -55.21 16 19 Si 0.96 42.18 24.96 68.60 1.71 43.89 16 20 H -0.24 -8.98 6.69 99.48 0.67 -8.31 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 23 H 0.08 1.07 7.67 -2.39 -0.02 1.05 16 24 H 0.06 1.06 7.65 -2.38 -0.02 1.05 16 25 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.17 2.79 6.30 -2.92 -0.02 2.77 16 27 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 28 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 29 H 0.12 3.26 7.32 -2.39 -0.02 3.24 16 30 H 0.12 3.42 7.65 -2.39 -0.02 3.40 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.06 2.13 3.42 -2.39 -0.01 2.13 16 33 H 0.10 2.70 6.64 -2.38 -0.02 2.69 16 34 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -80.33 292.58 6.36 -73.97 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 1.09 Total: 14.07 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 5.13 Total: -1.23 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -1.40 Total: -80.99 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -0.94 Total: -46.27 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.71 Total: 43.89 kcal Total: -80.33 6.36 -73.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359500292.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.368 kcal (2) G-P(sol) polarization free energy of solvation -80.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds