Wall clock time and date at job start Mon Mar 30 2020 00:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35673 * 117.00002 * 2 1 4 4 C 1.38922 * 119.68842 * 179.97438 * 3 2 1 5 5 C 1.38373 * 119.11091 * 180.27946 * 4 3 2 6 6 C 1.50709 * 120.75396 * 179.71972 * 5 4 3 7 7 S 1.81399 * 109.47121 * 89.99609 * 6 5 4 8 8 C 1.81395 * 103.00134 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47283 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.46840 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46680 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00366 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99920 * 180.02562 * 11 10 9 14 14 N 1.31507 * 119.99961 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99817 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47015 * 90.00278 * 15 13 11 17 17 H 1.48502 * 109.46988 * 210.00068 * 15 13 11 18 18 H 1.48501 * 109.47162 * 330.00147 * 15 13 11 19 19 C 1.38826 * 118.48994 * 359.43073 * 5 4 3 20 20 C 1.38050 * 119.28783 * 0.57157 * 19 5 4 21 21 N 1.31966 * 120.82936 * 359.69555 * 20 19 5 22 22 H 1.09003 * 109.46979 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47422 * 300.00227 * 1 2 3 24 24 H 1.09000 * 109.47227 * 60.00541 * 1 2 3 25 25 H 1.08002 * 120.43904 * 359.97438 * 4 3 2 26 26 H 1.08996 * 109.46883 * 209.99571 * 6 5 4 27 27 H 1.08998 * 109.47154 * 329.99880 * 6 5 4 28 28 H 1.09003 * 109.47407 * 300.00197 * 8 7 6 29 29 H 1.09003 * 109.46978 * 60.00157 * 8 7 6 30 30 H 1.08992 * 109.47065 * 300.00007 * 9 8 7 31 31 H 1.09003 * 109.46902 * 60.00212 * 9 8 7 32 32 H 1.08992 * 109.47387 * 299.99920 * 10 9 8 33 33 H 1.09003 * 109.47109 * 60.00450 * 10 9 8 34 34 H 0.97000 * 120.00386 * 179.97438 * 14 13 11 35 35 H 1.08000 * 120.36289 * 180.30624 * 19 5 4 36 36 H 1.07997 * 119.58512 * 179.71868 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0483 2.5132 0.0064 6 6 5.5511 2.6270 0.0136 7 16 6.1618 2.6768 -1.6938 8 6 7.9581 2.8132 -1.4809 9 6 8.6318 2.8665 -2.8536 10 6 10.1468 2.9822 -2.6739 11 6 10.8104 3.0340 -4.0259 12 1 10.2116 2.9894 -4.9235 13 6 12.1823 3.1385 -4.1170 14 7 12.7614 3.1843 -5.2968 15 14 13.2183 3.2149 -2.5644 16 1 13.5989 1.8392 -2.1551 17 1 14.4445 4.0106 -2.8262 18 1 12.4349 3.8558 -1.4777 19 6 3.2504 3.6492 -0.0005 20 6 1.8769 3.5097 -0.0010 21 7 1.3186 2.3140 -0.0010 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 4.0228 0.3695 0.0014 26 1 5.8438 3.5406 0.5309 27 1 5.9783 1.7657 0.5272 28 1 8.1903 3.7223 -0.9262 29 1 8.3254 1.9475 -0.9297 30 1 8.3997 1.9572 -3.4078 31 1 8.2646 3.7320 -3.4051 32 1 10.3786 3.8917 -2.1198 33 1 10.5144 2.1169 -2.1221 34 1 13.7264 3.2581 -5.3609 35 1 3.6991 4.6315 -0.0012 36 1 1.2516 4.3902 -0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419648787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:38 Heat of formation + Delta-G solvation = -20.703386 kcal Electronic energy + Delta-G solvation = -16615.755359 eV Core-core repulsion = 13805.073690 eV Total energy + Delta-G solvation = -2810.681669 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.86522 -38.24420 -34.62972 -34.13900 -32.10878 -31.01206 -28.63732 -28.01064 -27.17755 -23.72818 -23.31520 -22.05303 -20.21157 -18.21408 -17.37117 -16.81317 -16.31244 -16.21274 -15.85409 -15.04896 -14.76668 -14.59246 -14.46606 -13.96903 -13.41316 -13.30719 -13.20495 -12.55340 -12.41462 -12.13297 -12.04349 -11.88336 -11.48432 -11.28474 -10.89524 -10.39418 -9.97884 -9.96577 -9.79933 -9.63717 -9.50528 -9.24081 -8.77413 -8.57077 -7.58835 -6.06832 -4.05532 0.68535 0.93999 1.93199 2.68430 2.81326 3.27960 3.35523 3.37828 3.56451 4.02619 4.27671 4.41955 4.58162 4.83392 4.85150 4.98605 5.02742 5.11105 5.25750 5.26077 5.33971 5.34769 5.42999 5.47541 5.61900 5.93193 6.02050 6.12330 6.36673 6.46150 6.77775 6.96365 7.21364 7.33666 7.57470 7.74168 8.50531 8.98150 9.54713 11.06587 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.046550 B = 0.002775 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.356974 B =10086.145069 C =10211.482032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.308 6.308 3 C 0.320 3.680 4 C -0.174 4.174 5 C 0.012 3.988 6 C -0.058 4.058 7 S -0.251 6.251 8 C -0.081 4.081 9 C -0.087 4.087 10 C -0.007 4.007 11 C -0.522 4.522 12 H 0.073 0.927 13 C 0.066 3.934 14 N -0.902 5.902 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 C -0.194 4.194 20 C 0.139 3.861 21 N -0.542 5.542 22 H 0.095 0.905 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.144 0.856 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.017 0.983 33 H 0.013 0.987 34 H 0.263 0.737 35 H 0.141 0.859 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.577 -1.882 14.931 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.215 6.215 3 C 0.141 3.859 4 C -0.196 4.196 5 C 0.004 3.996 6 C -0.206 4.206 7 S -0.021 6.021 8 C -0.229 4.229 9 C -0.126 4.126 10 C -0.046 4.046 11 C -0.560 4.560 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.541 5.541 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.216 4.216 20 C -0.016 4.016 21 N -0.266 5.266 22 H 0.114 0.886 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.161 0.839 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -23.773 -2.266 13.904 27.634 hybrid contribution 2.037 0.283 1.821 2.747 sum -21.736 -1.983 15.725 26.901 Atomic orbital electron populations 1.22849 0.77227 1.02927 1.02417 1.86245 1.22906 1.24505 1.87845 1.19745 0.89160 0.84728 0.92278 1.20924 0.92057 0.99088 1.07551 1.19424 0.94035 0.92522 0.93659 1.22291 0.93398 1.06221 0.98656 1.87242 1.08661 1.97564 1.08676 1.23703 0.90612 1.04384 1.04174 1.21281 0.97089 1.02472 0.91797 1.19570 0.90517 0.96364 0.98161 1.21105 0.92172 1.50661 0.92043 0.90896 1.25033 0.97969 0.94565 0.95928 1.69909 1.10315 1.50709 1.23150 0.86769 0.79898 0.78411 0.84131 1.20271 1.21331 1.19067 1.21908 0.94677 0.99501 1.05467 1.22362 0.92623 0.93626 0.93034 1.67297 1.41031 0.98875 1.19424 0.88636 0.92375 0.92267 0.83851 0.88556 0.88682 0.90373 0.90376 0.91728 0.91718 0.96469 0.96904 0.92675 0.84161 0.82148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.43 10.48 -18.72 -0.20 -3.62 16 3 C 0.32 3.77 7.49 -17.12 -0.13 3.64 16 4 C -0.17 -1.96 9.75 -39.28 -0.38 -2.34 16 5 C 0.01 0.13 5.17 -104.35 -0.54 -0.41 16 6 C -0.06 -0.62 6.11 36.01 0.22 -0.40 16 7 S -0.25 -3.60 21.72 -107.50 -2.33 -5.93 16 8 C -0.08 -1.25 5.94 37.16 0.22 -1.03 16 9 C -0.09 -1.71 5.16 -26.73 -0.14 -1.85 16 10 C -0.01 -0.16 4.04 -27.88 -0.11 -0.27 16 11 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 12 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 13 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 14 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 15 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 19 C -0.19 -1.84 9.81 -39.43 -0.39 -2.23 16 20 C 0.14 1.30 11.18 -17.56 -0.20 1.10 16 21 N -0.54 -6.11 9.22 -13.33 -0.12 -6.23 16 22 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 24 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 25 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 26 H 0.10 0.88 8.10 -51.93 -0.42 0.46 16 27 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 28 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 29 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 33 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 322.12 15.07 4.85 4.85 Total: -1.00 -32.06 322.12 -7.94 -40.00 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -5.42 Total: -3.06 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.83 Total: -15.77 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.65 Total: -33.29 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -0.20 Total: -3.62 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.33 Total: -5.93 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.06 -7.94 -40.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419648787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.295 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds