Wall clock time and date at job start Mon Mar 30 2020 00:59:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.35673 * 117.00002 * 2 1
4 4 C 1.38922 * 119.68842 * 179.97438 * 3 2 1
5 5 C 1.38373 * 119.11091 * 180.27946 * 4 3 2
6 6 C 1.50709 * 120.75396 * 179.71972 * 5 4 3
7 7 S 1.81399 * 109.47121 * 89.99609 * 6 5 4
8 8 C 1.81395 * 103.00134 * 179.97438 * 7 6 5
9 9 C 1.53002 * 109.47283 * 179.97438 * 8 7 6
10 10 C 1.53003 * 109.46840 * 179.97438 * 9 8 7
11 11 C 1.50700 * 109.46680 * 179.97438 * 10 9 8
12 12 H 1.07994 * 120.00366 * 0.02562 * 11 10 9
13 13 C 1.37883 * 119.99920 * 180.02562 * 11 10 9
14 14 N 1.31507 * 119.99961 * 180.02562 * 13 11 10
15 15 Si 1.86802 * 119.99817 * 0.02562 * 13 11 10
16 16 H 1.48500 * 109.47015 * 90.00278 * 15 13 11
17 17 H 1.48502 * 109.46988 * 210.00068 * 15 13 11
18 18 H 1.48501 * 109.47162 * 330.00147 * 15 13 11
19 19 C 1.38826 * 118.48994 * 359.43073 * 5 4 3
20 20 C 1.38050 * 119.28783 * 0.57157 * 19 5 4
21 21 N 1.31966 * 120.82936 * 359.69555 * 20 19 5
22 22 H 1.09003 * 109.46979 * 179.97438 * 1 2 3
23 23 H 1.08992 * 109.47422 * 300.00227 * 1 2 3
24 24 H 1.09000 * 109.47227 * 60.00541 * 1 2 3
25 25 H 1.08002 * 120.43904 * 359.97438 * 4 3 2
26 26 H 1.08996 * 109.46883 * 209.99571 * 6 5 4
27 27 H 1.08998 * 109.47154 * 329.99880 * 6 5 4
28 28 H 1.09003 * 109.47407 * 300.00197 * 8 7 6
29 29 H 1.09003 * 109.46978 * 60.00157 * 8 7 6
30 30 H 1.08992 * 109.47065 * 300.00007 * 9 8 7
31 31 H 1.09003 * 109.46902 * 60.00212 * 9 8 7
32 32 H 1.08992 * 109.47387 * 299.99920 * 10 9 8
33 33 H 1.09003 * 109.47109 * 60.00450 * 10 9 8
34 34 H 0.97000 * 120.00386 * 179.97438 * 14 13 11
35 35 H 1.08000 * 120.36289 * 180.30624 * 19 5 4
36 36 H 1.07997 * 119.58512 * 179.71868 * 20 19 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2089 0.0000
4 6 3.4326 1.2740 0.0005
5 6 4.0483 2.5132 0.0064
6 6 5.5511 2.6270 0.0136
7 16 6.1618 2.6768 -1.6938
8 6 7.9581 2.8132 -1.4809
9 6 8.6318 2.8665 -2.8536
10 6 10.1468 2.9822 -2.6739
11 6 10.8104 3.0340 -4.0259
12 1 10.2116 2.9894 -4.9235
13 6 12.1823 3.1385 -4.1170
14 7 12.7614 3.1843 -5.2968
15 14 13.2183 3.2149 -2.5644
16 1 13.5989 1.8392 -2.1551
17 1 14.4445 4.0106 -2.8262
18 1 12.4349 3.8558 -1.4777
19 6 3.2504 3.6492 -0.0005
20 6 1.8769 3.5097 -0.0010
21 7 1.3186 2.3140 -0.0010
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3634 0.5138 0.8899
24 1 -0.3634 0.5137 -0.8900
25 1 4.0228 0.3695 0.0014
26 1 5.8438 3.5406 0.5309
27 1 5.9783 1.7657 0.5272
28 1 8.1903 3.7223 -0.9262
29 1 8.3254 1.9475 -0.9297
30 1 8.3997 1.9572 -3.4078
31 1 8.2646 3.7320 -3.4051
32 1 10.3786 3.8917 -2.1198
33 1 10.5144 2.1169 -2.1221
34 1 13.7264 3.2581 -5.3609
35 1 3.6991 4.6315 -0.0012
36 1 1.2516 4.3902 -0.0018
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000419648787.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:59:38
Heat of formation + Delta-G solvation = -41.084679 kcal
Electronic energy + Delta-G solvation = -16616.639158 eV
Core-core repulsion = 13805.073690 eV
Total energy + Delta-G solvation = -2811.565469 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 267.103 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.62684 -38.99389 -36.39102 -34.93227 -34.15343 -31.75195 -29.97685 -29.24763
-27.87851 -25.09858 -24.45369 -22.94228 -21.90418 -19.10870 -18.83428 -18.13052
-17.20982 -16.98887 -16.83041 -16.35296 -16.28347 -15.62517 -15.36146 -15.17825
-14.73695 -14.22910 -14.18092 -14.14207 -13.63838 -13.54005 -13.04114 -12.96620
-12.67671 -12.57349 -12.18798 -11.84235 -11.71516 -11.57126 -11.36554 -11.02540
-10.76607 -10.70448 -10.48339 -9.53209 -8.68634 -8.29119 -6.34498 -0.17341
0.17593 0.95496 1.37618 1.39931 1.51750 1.64525 2.10475 2.37115
2.79251 3.06157 3.29961 3.53151 3.84463 4.04895 4.05980 4.09373
4.11076 4.42528 4.43301 4.44640 4.51090 4.56658 4.73316 4.75568
4.77484 4.85715 4.88506 5.00541 5.26769 5.41377 5.45155 5.53374
5.64714 6.21819 6.27425 6.73692 6.81037 7.30014 8.87995
Molecular weight = 267.10amu
Principal moments of inertia in cm(-1)
A = 0.046550 B = 0.002775 C = 0.002741
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 601.356974 B =10086.145069 C =10211.482032
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 O -0.324 6.324
3 C 0.301 3.699
4 C -0.186 4.186
5 C 0.002 3.998
6 C -0.041 4.041
7 S -0.289 6.289
8 C -0.070 4.070
9 C -0.080 4.080
10 C -0.004 4.004
11 C -0.537 4.537
12 H 0.027 0.973
13 C 0.000 4.000
14 N -0.954 5.954
15 Si 0.957 3.043
16 H -0.266 1.266
17 H -0.285 1.285
18 H -0.240 1.240
19 C -0.192 4.192
20 C 0.135 3.865
21 N -0.554 5.554
22 H 0.120 0.880
23 H 0.059 0.941
24 H 0.055 0.945
25 H 0.145 0.855
26 H 0.118 0.882
27 H 0.108 0.892
28 H 0.094 0.906
29 H 0.091 0.909
30 H 0.049 0.951
31 H 0.051 0.949
32 H 0.028 0.972
33 H 0.025 0.975
34 H 0.267 0.733
35 H 0.162 0.838
36 H 0.192 0.808
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.095 -1.337 17.919 29.261
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.231 6.231
3 C 0.123 3.877
4 C -0.209 4.209
5 C -0.006 4.006
6 C -0.188 4.188
7 S -0.060 6.060
8 C -0.217 4.217
9 C -0.119 4.119
10 C -0.043 4.043
11 C -0.575 4.575
12 H 0.045 0.955
13 C -0.197 4.197
14 N -0.594 5.594
15 Si 0.779 3.221
16 H -0.191 1.191
17 H -0.211 1.211
18 H -0.163 1.163
19 C -0.213 4.213
20 C -0.020 4.020
21 N -0.279 5.279
22 H 0.138 0.862
23 H 0.078 0.922
24 H 0.073 0.927
25 H 0.163 0.837
26 H 0.136 0.864
27 H 0.126 0.874
28 H 0.113 0.887
29 H 0.110 0.890
30 H 0.067 0.933
31 H 0.069 0.931
32 H 0.046 0.954
33 H 0.043 0.957
34 H 0.075 0.925
35 H 0.179 0.821
36 H 0.209 0.791
Dipole moment (debyes) X Y Z Total
from point charges -24.313 -1.727 16.894 29.656
hybrid contribution 2.047 0.118 0.807 2.203
sum -22.266 -1.610 17.701 28.490
Atomic orbital electron populations
1.23042 0.75790 1.04579 1.02261 1.86219 1.24448 1.24583 1.87897
1.19961 0.89585 0.85133 0.93012 1.21068 0.92161 0.99648 1.08025
1.19532 0.94223 0.92732 0.94158 1.22317 0.93045 1.07971 0.95483
1.87389 1.07953 1.97728 1.12898 1.23430 0.91165 1.05869 1.01282
1.21041 0.95308 1.01156 0.94397 1.19502 0.92585 0.97127 0.95118
1.21498 0.92480 1.50353 0.93204 0.95493 1.26115 0.99566 0.94005
0.99968 1.70082 1.10884 1.52304 1.26148 0.85567 0.77774 0.79106
0.79632 1.19097 1.21134 1.16290 1.22207 0.94755 1.00088 1.04281
1.22938 0.93238 0.93946 0.91885 1.67346 1.41455 0.99390 1.19713
0.86157 0.92205 0.92671 0.83670 0.86414 0.87392 0.88730 0.89000
0.93252 0.93052 0.95389 0.95670 0.92468 0.82051 0.79116
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.56 10.38 113.37 1.18 1.74 16
2 O -0.32 -7.08 10.48 -89.90 -0.94 -8.02 16
3 C 0.30 6.90 7.49 84.79 0.63 7.53 16
4 C -0.19 -4.02 9.75 22.47 0.22 -3.80 16
5 C 0.00 0.05 5.17 -19.69 -0.10 -0.06 16
6 C -0.04 -0.75 6.11 71.24 0.44 -0.31 16
7 S -0.29 -7.78 21.72 -56.49 -1.23 -9.01 16
8 C -0.07 -1.99 5.94 71.98 0.43 -1.56 16
9 C -0.08 -3.11 5.16 30.60 0.16 -2.95 16
10 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16
11 C -0.54 -31.26 9.66 25.60 0.25 -31.02 16
12 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16
13 C 0.00 0.00 5.47 84.66 0.46 0.46 16
14 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16
15 Si 0.96 43.51 27.47 68.60 1.88 45.39 16
16 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16
17 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16
18 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16
19 C -0.19 -3.15 9.81 22.37 0.22 -2.93 16
20 C 0.13 2.22 11.18 84.63 0.95 3.17 16
21 N -0.55 -11.79 9.22 -308.95 -2.85 -14.64 16
22 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16
23 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16
24 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16
25 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16
26 H 0.12 1.67 8.10 -2.39 -0.02 1.65 16
27 H 0.11 1.71 8.10 -2.39 -0.02 1.69 16
28 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16
29 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16
30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16
31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16
32 H 0.03 1.21 7.20 -2.39 -0.02 1.20 16
33 H 0.02 1.08 7.57 -2.39 -0.02 1.07 16
34 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16
35 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16
36 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16
Total: -1.00 -71.12 322.12 3.10 -68.02
By element:
Atomic # 1 Polarization: 7.19 SS G_CDS: 0.99 Total: 8.18 kcal
Atomic # 6 Polarization: -34.74 SS G_CDS: 4.95 Total: -29.79 kcal
Atomic # 7 Polarization: -72.22 SS G_CDS: -2.55 Total: -74.76 kcal
Atomic # 8 Polarization: -7.08 SS G_CDS: -0.94 Total: -8.02 kcal
Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal
Atomic # 16 Polarization: -7.78 SS G_CDS: -1.23 Total: -9.01 kcal
Total: -71.12 3.10 -68.02 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000419648787.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.935 kcal
(2) G-P(sol) polarization free energy of solvation -71.124 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.189 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.020 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.085 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds