Wall clock time and date at job start Mon Mar 30 2020 00:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35673 * 117.00002 * 2 1 4 4 C 1.38922 * 119.68842 * 179.97438 * 3 2 1 5 5 C 1.38373 * 119.11091 * 180.27946 * 4 3 2 6 6 C 1.50709 * 120.75396 * 179.71972 * 5 4 3 7 7 S 1.81399 * 109.47121 * 89.99609 * 6 5 4 8 8 C 1.81395 * 103.00134 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47283 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.46840 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46680 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00366 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99920 * 180.02562 * 11 10 9 14 14 N 1.31507 * 119.99961 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99817 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47015 * 90.00278 * 15 13 11 17 17 H 1.48502 * 109.46988 * 210.00068 * 15 13 11 18 18 H 1.48501 * 109.47162 * 330.00147 * 15 13 11 19 19 C 1.38826 * 118.48994 * 359.43073 * 5 4 3 20 20 C 1.38050 * 119.28783 * 0.57157 * 19 5 4 21 21 N 1.31966 * 120.82936 * 359.69555 * 20 19 5 22 22 H 1.09003 * 109.46979 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47422 * 300.00227 * 1 2 3 24 24 H 1.09000 * 109.47227 * 60.00541 * 1 2 3 25 25 H 1.08002 * 120.43904 * 359.97438 * 4 3 2 26 26 H 1.08996 * 109.46883 * 209.99571 * 6 5 4 27 27 H 1.08998 * 109.47154 * 329.99880 * 6 5 4 28 28 H 1.09003 * 109.47407 * 300.00197 * 8 7 6 29 29 H 1.09003 * 109.46978 * 60.00157 * 8 7 6 30 30 H 1.08992 * 109.47065 * 300.00007 * 9 8 7 31 31 H 1.09003 * 109.46902 * 60.00212 * 9 8 7 32 32 H 1.08992 * 109.47387 * 299.99920 * 10 9 8 33 33 H 1.09003 * 109.47109 * 60.00450 * 10 9 8 34 34 H 0.97000 * 120.00386 * 179.97438 * 14 13 11 35 35 H 1.08000 * 120.36289 * 180.30624 * 19 5 4 36 36 H 1.07997 * 119.58512 * 179.71868 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0483 2.5132 0.0064 6 6 5.5511 2.6270 0.0136 7 16 6.1618 2.6768 -1.6938 8 6 7.9581 2.8132 -1.4809 9 6 8.6318 2.8665 -2.8536 10 6 10.1468 2.9822 -2.6739 11 6 10.8104 3.0340 -4.0259 12 1 10.2116 2.9894 -4.9235 13 6 12.1823 3.1385 -4.1170 14 7 12.7614 3.1843 -5.2968 15 14 13.2183 3.2149 -2.5644 16 1 13.5989 1.8392 -2.1551 17 1 14.4445 4.0106 -2.8262 18 1 12.4349 3.8558 -1.4777 19 6 3.2504 3.6492 -0.0005 20 6 1.8769 3.5097 -0.0010 21 7 1.3186 2.3140 -0.0010 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 4.0228 0.3695 0.0014 26 1 5.8438 3.5406 0.5309 27 1 5.9783 1.7657 0.5272 28 1 8.1903 3.7223 -0.9262 29 1 8.3254 1.9475 -0.9297 30 1 8.3997 1.9572 -3.4078 31 1 8.2646 3.7320 -3.4051 32 1 10.3786 3.8917 -2.1198 33 1 10.5144 2.1169 -2.1221 34 1 13.7264 3.2581 -5.3609 35 1 3.6991 4.6315 -0.0012 36 1 1.2516 4.3902 -0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419648787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:38 Heat of formation + Delta-G solvation = -41.084679 kcal Electronic energy + Delta-G solvation = -16616.639158 eV Core-core repulsion = 13805.073690 eV Total energy + Delta-G solvation = -2811.565469 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.62684 -38.99389 -36.39102 -34.93227 -34.15343 -31.75195 -29.97685 -29.24763 -27.87851 -25.09858 -24.45369 -22.94228 -21.90418 -19.10870 -18.83428 -18.13052 -17.20982 -16.98887 -16.83041 -16.35296 -16.28347 -15.62517 -15.36146 -15.17825 -14.73695 -14.22910 -14.18092 -14.14207 -13.63838 -13.54005 -13.04114 -12.96620 -12.67671 -12.57349 -12.18798 -11.84235 -11.71516 -11.57126 -11.36554 -11.02540 -10.76607 -10.70448 -10.48339 -9.53209 -8.68634 -8.29119 -6.34498 -0.17341 0.17593 0.95496 1.37618 1.39931 1.51750 1.64525 2.10475 2.37115 2.79251 3.06157 3.29961 3.53151 3.84463 4.04895 4.05980 4.09373 4.11076 4.42528 4.43301 4.44640 4.51090 4.56658 4.73316 4.75568 4.77484 4.85715 4.88506 5.00541 5.26769 5.41377 5.45155 5.53374 5.64714 6.21819 6.27425 6.73692 6.81037 7.30014 8.87995 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.046550 B = 0.002775 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.356974 B =10086.145069 C =10211.482032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.301 3.699 4 C -0.186 4.186 5 C 0.002 3.998 6 C -0.041 4.041 7 S -0.289 6.289 8 C -0.070 4.070 9 C -0.080 4.080 10 C -0.004 4.004 11 C -0.537 4.537 12 H 0.027 0.973 13 C 0.000 4.000 14 N -0.954 5.954 15 Si 0.957 3.043 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.240 1.240 19 C -0.192 4.192 20 C 0.135 3.865 21 N -0.554 5.554 22 H 0.120 0.880 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.145 0.855 26 H 0.118 0.882 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.028 0.972 33 H 0.025 0.975 34 H 0.267 0.733 35 H 0.162 0.838 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.095 -1.337 17.919 29.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.231 6.231 3 C 0.123 3.877 4 C -0.209 4.209 5 C -0.006 4.006 6 C -0.188 4.188 7 S -0.060 6.060 8 C -0.217 4.217 9 C -0.119 4.119 10 C -0.043 4.043 11 C -0.575 4.575 12 H 0.045 0.955 13 C -0.197 4.197 14 N -0.594 5.594 15 Si 0.779 3.221 16 H -0.191 1.191 17 H -0.211 1.211 18 H -0.163 1.163 19 C -0.213 4.213 20 C -0.020 4.020 21 N -0.279 5.279 22 H 0.138 0.862 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.163 0.837 26 H 0.136 0.864 27 H 0.126 0.874 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.179 0.821 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -24.313 -1.727 16.894 29.656 hybrid contribution 2.047 0.118 0.807 2.203 sum -22.266 -1.610 17.701 28.490 Atomic orbital electron populations 1.23042 0.75790 1.04579 1.02261 1.86219 1.24448 1.24583 1.87897 1.19961 0.89585 0.85133 0.93012 1.21068 0.92161 0.99648 1.08025 1.19532 0.94223 0.92732 0.94158 1.22317 0.93045 1.07971 0.95483 1.87389 1.07953 1.97728 1.12898 1.23430 0.91165 1.05869 1.01282 1.21041 0.95308 1.01156 0.94397 1.19502 0.92585 0.97127 0.95118 1.21498 0.92480 1.50353 0.93204 0.95493 1.26115 0.99566 0.94005 0.99968 1.70082 1.10884 1.52304 1.26148 0.85567 0.77774 0.79106 0.79632 1.19097 1.21134 1.16290 1.22207 0.94755 1.00088 1.04281 1.22938 0.93238 0.93946 0.91885 1.67346 1.41455 0.99390 1.19713 0.86157 0.92205 0.92671 0.83670 0.86414 0.87392 0.88730 0.89000 0.93252 0.93052 0.95389 0.95670 0.92468 0.82051 0.79116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.38 113.37 1.18 1.74 16 2 O -0.32 -7.08 10.48 -89.90 -0.94 -8.02 16 3 C 0.30 6.90 7.49 84.79 0.63 7.53 16 4 C -0.19 -4.02 9.75 22.47 0.22 -3.80 16 5 C 0.00 0.05 5.17 -19.69 -0.10 -0.06 16 6 C -0.04 -0.75 6.11 71.24 0.44 -0.31 16 7 S -0.29 -7.78 21.72 -56.49 -1.23 -9.01 16 8 C -0.07 -1.99 5.94 71.98 0.43 -1.56 16 9 C -0.08 -3.11 5.16 30.60 0.16 -2.95 16 10 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 11 C -0.54 -31.26 9.66 25.60 0.25 -31.02 16 12 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 13 C 0.00 0.00 5.47 84.66 0.46 0.46 16 14 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 15 Si 0.96 43.51 27.47 68.60 1.88 45.39 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 17 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 18 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 19 C -0.19 -3.15 9.81 22.37 0.22 -2.93 16 20 C 0.13 2.22 11.18 84.63 0.95 3.17 16 21 N -0.55 -11.79 9.22 -308.95 -2.85 -14.64 16 22 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 24 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 25 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 26 H 0.12 1.67 8.10 -2.39 -0.02 1.65 16 27 H 0.11 1.71 8.10 -2.39 -0.02 1.69 16 28 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.03 1.21 7.20 -2.39 -0.02 1.20 16 33 H 0.02 1.08 7.57 -2.39 -0.02 1.07 16 34 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -71.12 322.12 3.10 -68.02 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.99 Total: 8.18 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 4.95 Total: -29.79 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -2.55 Total: -74.76 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.94 Total: -8.02 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Atomic # 16 Polarization: -7.78 SS G_CDS: -1.23 Total: -9.01 kcal Total: -71.12 3.10 -68.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419648787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.935 kcal (2) G-P(sol) polarization free energy of solvation -71.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds