Wall clock time and date at job start Mon Mar 30 2020 00:58:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35944 * 117.00656 * 2 1
4 4 C 1.38734 * 120.02603 * 0.02562 * 3 2 1
5 5 C 1.38118 * 119.97120 * 179.97438 * 4 3 2
6 6 C 1.38482 * 120.03175 * 359.97438 * 5 4 3
7 7 F 1.35101 * 119.97206 * 179.97438 * 6 5 4
8 8 C 1.38432 * 120.05577 * 359.78943 * 6 5 4
9 9 C 1.38172 * 120.03031 * 0.46314 * 8 6 5
10 10 C 1.50703 * 120.01277 * 179.79239 * 9 8 6
11 11 C 1.50701 * 109.47064 * 264.72240 * 10 9 8
12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9
13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9
14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10
15 15 C 1.50703 * 109.46835 * 180.02562 * 14 13 11
16 16 H 1.07995 * 120.00280 * 0.02562 * 15 14 13
17 17 C 1.37880 * 119.99788 * 180.02562 * 15 14 13
18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14
19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14
20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15
21 21 H 1.48495 * 109.46968 * 209.99597 * 19 17 15
22 22 H 1.48499 * 109.47437 * 330.00066 * 19 17 15
23 23 H 1.08996 * 109.47161 * 59.99848 * 1 2 3
24 24 H 1.09000 * 109.47200 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.47039 * 299.99874 * 1 2 3
26 26 H 1.08004 * 120.01233 * 359.97438 * 4 3 2
27 27 H 1.08005 * 119.98847 * 179.97438 * 5 4 3
28 28 H 1.07999 * 119.98211 * 180.23340 * 8 6 5
29 29 H 1.09002 * 109.47152 * 144.72333 * 10 9 8
30 30 H 1.09001 * 109.46980 * 24.72433 * 10 9 8
31 31 H 0.96995 * 120.00011 * 0.02562 * 13 11 10
32 32 H 1.09001 * 109.47487 * 300.00114 * 14 13 11
33 33 H 1.09002 * 109.47182 * 60.00342 * 14 13 11
34 34 H 0.97000 * 120.00354 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2112 0.0000
4 6 1.2914 2.3752 0.0005
5 6 1.9197 3.6051 0.0011
6 6 3.3027 3.6769 0.0016
7 9 3.9161 4.8806 0.0016
8 6 4.0572 2.5162 0.0060
9 6 3.4311 1.2845 0.0002
10 6 4.2529 0.0212 0.0003
11 6 4.4231 -0.4674 -1.4151
12 8 3.9264 0.1497 -2.3335
13 7 5.1281 -1.5896 -1.6604
14 6 5.2940 -2.0642 -3.0364
15 6 6.1157 -3.3275 -3.0363
16 1 6.4777 -3.7362 -2.1045
17 6 6.4052 -3.9616 -4.2259
18 7 5.9648 -3.4637 -5.3607
19 14 7.4243 -5.5272 -4.2259
20 1 6.5253 -6.7030 -4.1049
21 1 8.1909 -5.6188 -5.4944
22 1 8.3667 -5.5044 -3.0785
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 0.2127 2.3195 0.0005
27 1 1.3323 4.5114 0.0011
28 1 5.1356 2.5736 0.0102
29 1 3.7453 -0.7424 0.5897
30 1 5.2317 0.2246 0.4347
31 1 5.5256 -2.0829 -0.9259
32 1 4.3153 -2.2678 -3.4711
33 1 5.8015 -1.3003 -3.6256
34 1 6.1682 -3.9100 -6.1976
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000427609359.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:58:06
Heat of formation + Delta-G solvation = -103.252256 kcal
Electronic energy + Delta-G solvation = -19587.626372 eV
Core-core repulsion = 16207.151939 eV
Total energy + Delta-G solvation = -3380.474433 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.106 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-48.78423 -40.35823 -38.56966 -37.17785 -34.14895 -32.85456 -32.24371 -29.88419
-28.47147 -27.28120 -26.44226 -22.95716 -22.33007 -21.63365 -19.63277 -18.12114
-17.25945 -17.01597 -16.87553 -15.93936 -15.45224 -15.36874 -15.12323 -14.72586
-14.61503 -14.46408 -14.12829 -13.30621 -13.04589 -12.90410 -12.71760 -12.25260
-12.08988 -11.92190 -11.90576 -11.30089 -11.00408 -10.95483 -10.85688 -10.83058
-10.29204 -9.37214 -9.25533 -8.84990 -8.71027 -8.03242 -7.83026 -6.14551
-4.21358 1.11475 1.22908 3.21345 3.25388 3.31415 3.33924 3.45254
3.49492 4.19121 4.29455 4.44698 4.57616 4.65942 4.93687 5.00583
5.07662 5.21453 5.22191 5.38406 5.44321 5.50240 5.60704 5.69292
5.96816 6.05521 6.07819 6.32207 6.69232 7.29763 7.35297 7.49072
7.55633 7.69862 7.99830 8.67494 8.81384 9.16340 9.45470 10.95717
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.027668 B = 0.004023 C = 0.003728
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1011.758437 B = 6957.730284 C = 7508.956048
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.306 6.306
3 C 0.136 3.864
4 C -0.182 4.182
5 C -0.118 4.118
6 C 0.059 3.941
7 F -0.144 7.144
8 C -0.104 4.104
9 C -0.058 4.058
10 C -0.099 4.099
11 C 0.504 3.496
12 O -0.550 6.550
13 N -0.714 5.714
14 C 0.250 3.750
15 C -0.542 4.542
16 H 0.063 0.937
17 C 0.063 3.937
18 N -0.886 5.886
19 Si 0.903 3.097
20 H -0.279 1.279
21 H -0.285 1.285
22 H -0.273 1.273
23 H 0.056 0.944
24 H 0.101 0.899
25 H 0.053 0.947
26 H 0.136 0.864
27 H 0.135 0.865
28 H 0.141 0.859
29 H 0.104 0.896
30 H 0.099 0.901
31 H 0.390 0.610
32 H 0.026 0.974
33 H 0.026 0.974
34 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.982 9.774 14.664 19.780
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.219 6.219
3 C 0.090 3.910
4 C -0.201 4.201
5 C -0.137 4.137
6 C 0.039 3.961
7 F -0.123 7.123
8 C -0.122 4.122
9 C -0.059 4.059
10 C -0.139 4.139
11 C 0.288 3.712
12 O -0.428 6.428
13 N -0.362 5.362
14 C 0.130 3.870
15 C -0.581 4.581
16 H 0.081 0.919
17 C -0.140 4.140
18 N -0.524 5.524
19 Si 0.731 3.269
20 H -0.205 1.205
21 H -0.210 1.210
22 H -0.197 1.197
23 H 0.075 0.925
24 H 0.119 0.881
25 H 0.072 0.928
26 H 0.154 0.846
27 H 0.153 0.847
28 H 0.159 0.841
29 H 0.123 0.877
30 H 0.117 0.883
31 H 0.223 0.777
32 H 0.044 0.956
33 H 0.044 0.956
34 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -9.225 10.011 13.760 19.356
hybrid contribution 0.554 -0.729 0.131 0.925
sum -8.671 9.282 13.891 18.823
Atomic orbital electron populations
1.23078 0.78416 1.04184 1.01126 1.86133 1.21279 1.26254 1.88206
1.18773 0.91657 0.84525 0.96072 1.20992 1.00202 0.91311 1.07608
1.20826 0.92635 0.98527 1.01665 1.17446 0.90802 0.80444 1.07375
1.91472 1.83370 1.42971 1.94446 1.20824 1.00690 0.90063 1.00657
1.18508 0.90360 0.94384 1.02641 1.20582 1.00755 0.95472 0.97124
1.20225 0.79394 0.81603 0.89981 1.90668 1.48982 1.56978 1.46207
1.46426 1.52467 1.25227 1.12112 1.19084 0.97081 0.94193 0.76687
1.21241 1.34312 1.09046 0.93473 0.91880 1.24954 0.95930 0.97924
0.95219 1.69977 1.44840 1.39664 0.97879 0.86420 0.80046 0.82850
0.77618 1.20481 1.21028 1.19731 0.92503 0.88087 0.92797 0.84606
0.84741 0.84127 0.87747 0.88254 0.77725 0.95634 0.95615 0.92480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.25 9.81 101.05 0.99 1.25 16
2 O -0.31 -4.30 9.63 -19.56 -0.19 -4.49 16
3 C 0.14 1.94 6.66 -39.24 -0.26 1.68 16
4 C -0.18 -2.18 9.04 -39.44 -0.36 -2.53 16
5 C -0.12 -1.40 10.02 -39.54 -0.40 -1.79 16
6 C 0.06 0.79 7.30 -39.42 -0.29 0.51 16
7 F -0.14 -1.97 17.27 2.25 0.04 -1.93 16
8 C -0.10 -1.45 9.65 -39.53 -0.38 -1.83 16
9 C -0.06 -0.86 4.39 -104.48 -0.46 -1.32 16
10 C -0.10 -1.45 5.55 -29.03 -0.16 -1.61 16
11 C 0.50 10.25 7.82 -10.98 -0.09 10.16 16
12 O -0.55 -13.61 16.03 5.56 0.09 -13.52 16
13 N -0.71 -15.21 5.55 -61.47 -0.34 -15.55 16
14 C 0.25 6.73 5.43 -5.19 -0.03 6.70 16
15 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16
16 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16
17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16
18 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16
19 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16
20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16
23 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16
24 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16
25 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16
26 H 0.14 1.22 6.30 -52.48 -0.33 0.89 16
27 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16
28 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16
29 H 0.10 1.36 7.69 -51.93 -0.40 0.96 16
30 H 0.10 1.15 8.05 -51.93 -0.42 0.74 16
31 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16
32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
33 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16
34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16
LS Contribution 305.15 15.07 4.60 4.60
Total: -1.00 -34.02 305.15 -5.86 -39.88
By element:
Atomic # 1 Polarization: 6.91 SS G_CDS: -3.93 Total: 2.98 kcal
Atomic # 6 Polarization: -0.42 SS G_CDS: -1.84 Total: -2.26 kcal
Atomic # 7 Polarization: -41.55 SS G_CDS: 0.40 Total: -41.15 kcal
Atomic # 8 Polarization: -17.91 SS G_CDS: -0.10 Total: -18.01 kcal
Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal
Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal
Total LS contribution 4.60 Total: 4.60 kcal
Total: -34.02 -5.86 -39.88 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000427609359.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.369 kcal
(2) G-P(sol) polarization free energy of solvation -34.024 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.392 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.252 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds