Wall clock time and date at job start Mon Mar 30 2020 00:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35944 * 117.00656 * 2 1 4 4 C 1.38734 * 120.02603 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.97120 * 179.97438 * 4 3 2 6 6 C 1.38482 * 120.03175 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.97206 * 179.97438 * 6 5 4 8 8 C 1.38432 * 120.05577 * 359.78943 * 6 5 4 9 9 C 1.38172 * 120.03031 * 0.46314 * 8 6 5 10 10 C 1.50703 * 120.01277 * 179.79239 * 9 8 6 11 11 C 1.50701 * 109.47064 * 264.72240 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46835 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00280 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99788 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15 21 21 H 1.48495 * 109.46968 * 209.99597 * 19 17 15 22 22 H 1.48499 * 109.47437 * 330.00066 * 19 17 15 23 23 H 1.08996 * 109.47161 * 59.99848 * 1 2 3 24 24 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47039 * 299.99874 * 1 2 3 26 26 H 1.08004 * 120.01233 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.98847 * 179.97438 * 5 4 3 28 28 H 1.07999 * 119.98211 * 180.23340 * 8 6 5 29 29 H 1.09002 * 109.47152 * 144.72333 * 10 9 8 30 30 H 1.09001 * 109.46980 * 24.72433 * 10 9 8 31 31 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 33 33 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 34 34 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9197 3.6051 0.0011 6 6 3.3027 3.6769 0.0016 7 9 3.9161 4.8806 0.0016 8 6 4.0572 2.5162 0.0060 9 6 3.4311 1.2845 0.0002 10 6 4.2529 0.0212 0.0003 11 6 4.4231 -0.4674 -1.4151 12 8 3.9264 0.1497 -2.3335 13 7 5.1281 -1.5896 -1.6604 14 6 5.2940 -2.0642 -3.0364 15 6 6.1157 -3.3275 -3.0363 16 1 6.4777 -3.7362 -2.1045 17 6 6.4052 -3.9616 -4.2259 18 7 5.9648 -3.4637 -5.3607 19 14 7.4243 -5.5272 -4.2259 20 1 6.5253 -6.7030 -4.1049 21 1 8.1909 -5.6188 -5.4944 22 1 8.3667 -5.5044 -3.0785 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2127 2.3195 0.0005 27 1 1.3323 4.5114 0.0011 28 1 5.1356 2.5736 0.0102 29 1 3.7453 -0.7424 0.5897 30 1 5.2317 0.2246 0.4347 31 1 5.5256 -2.0829 -0.9259 32 1 4.3153 -2.2678 -3.4711 33 1 5.8015 -1.3003 -3.6256 34 1 6.1682 -3.9100 -6.1976 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427609359.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:06 Heat of formation + Delta-G solvation = -103.252256 kcal Electronic energy + Delta-G solvation = -19587.626372 eV Core-core repulsion = 16207.151939 eV Total energy + Delta-G solvation = -3380.474433 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.78423 -40.35823 -38.56966 -37.17785 -34.14895 -32.85456 -32.24371 -29.88419 -28.47147 -27.28120 -26.44226 -22.95716 -22.33007 -21.63365 -19.63277 -18.12114 -17.25945 -17.01597 -16.87553 -15.93936 -15.45224 -15.36874 -15.12323 -14.72586 -14.61503 -14.46408 -14.12829 -13.30621 -13.04589 -12.90410 -12.71760 -12.25260 -12.08988 -11.92190 -11.90576 -11.30089 -11.00408 -10.95483 -10.85688 -10.83058 -10.29204 -9.37214 -9.25533 -8.84990 -8.71027 -8.03242 -7.83026 -6.14551 -4.21358 1.11475 1.22908 3.21345 3.25388 3.31415 3.33924 3.45254 3.49492 4.19121 4.29455 4.44698 4.57616 4.65942 4.93687 5.00583 5.07662 5.21453 5.22191 5.38406 5.44321 5.50240 5.60704 5.69292 5.96816 6.05521 6.07819 6.32207 6.69232 7.29763 7.35297 7.49072 7.55633 7.69862 7.99830 8.67494 8.81384 9.16340 9.45470 10.95717 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027668 B = 0.004023 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.758437 B = 6957.730284 C = 7508.956048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.136 3.864 4 C -0.182 4.182 5 C -0.118 4.118 6 C 0.059 3.941 7 F -0.144 7.144 8 C -0.104 4.104 9 C -0.058 4.058 10 C -0.099 4.099 11 C 0.504 3.496 12 O -0.550 6.550 13 N -0.714 5.714 14 C 0.250 3.750 15 C -0.542 4.542 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 H 0.056 0.944 24 H 0.101 0.899 25 H 0.053 0.947 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.141 0.859 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.390 0.610 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.982 9.774 14.664 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.090 3.910 4 C -0.201 4.201 5 C -0.137 4.137 6 C 0.039 3.961 7 F -0.123 7.123 8 C -0.122 4.122 9 C -0.059 4.059 10 C -0.139 4.139 11 C 0.288 3.712 12 O -0.428 6.428 13 N -0.362 5.362 14 C 0.130 3.870 15 C -0.581 4.581 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.524 5.524 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.075 0.925 24 H 0.119 0.881 25 H 0.072 0.928 26 H 0.154 0.846 27 H 0.153 0.847 28 H 0.159 0.841 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.223 0.777 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.225 10.011 13.760 19.356 hybrid contribution 0.554 -0.729 0.131 0.925 sum -8.671 9.282 13.891 18.823 Atomic orbital electron populations 1.23078 0.78416 1.04184 1.01126 1.86133 1.21279 1.26254 1.88206 1.18773 0.91657 0.84525 0.96072 1.20992 1.00202 0.91311 1.07608 1.20826 0.92635 0.98527 1.01665 1.17446 0.90802 0.80444 1.07375 1.91472 1.83370 1.42971 1.94446 1.20824 1.00690 0.90063 1.00657 1.18508 0.90360 0.94384 1.02641 1.20582 1.00755 0.95472 0.97124 1.20225 0.79394 0.81603 0.89981 1.90668 1.48982 1.56978 1.46207 1.46426 1.52467 1.25227 1.12112 1.19084 0.97081 0.94193 0.76687 1.21241 1.34312 1.09046 0.93473 0.91880 1.24954 0.95930 0.97924 0.95219 1.69977 1.44840 1.39664 0.97879 0.86420 0.80046 0.82850 0.77618 1.20481 1.21028 1.19731 0.92503 0.88087 0.92797 0.84606 0.84741 0.84127 0.87747 0.88254 0.77725 0.95634 0.95615 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.30 9.63 -19.56 -0.19 -4.49 16 3 C 0.14 1.94 6.66 -39.24 -0.26 1.68 16 4 C -0.18 -2.18 9.04 -39.44 -0.36 -2.53 16 5 C -0.12 -1.40 10.02 -39.54 -0.40 -1.79 16 6 C 0.06 0.79 7.30 -39.42 -0.29 0.51 16 7 F -0.14 -1.97 17.27 2.25 0.04 -1.93 16 8 C -0.10 -1.45 9.65 -39.53 -0.38 -1.83 16 9 C -0.06 -0.86 4.39 -104.48 -0.46 -1.32 16 10 C -0.10 -1.45 5.55 -29.03 -0.16 -1.61 16 11 C 0.50 10.25 7.82 -10.98 -0.09 10.16 16 12 O -0.55 -13.61 16.03 5.56 0.09 -13.52 16 13 N -0.71 -15.21 5.55 -61.47 -0.34 -15.55 16 14 C 0.25 6.73 5.43 -5.19 -0.03 6.70 16 15 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 19 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 24 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 26 H 0.14 1.22 6.30 -52.48 -0.33 0.89 16 27 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 28 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.10 1.36 7.69 -51.93 -0.40 0.96 16 30 H 0.10 1.15 8.05 -51.93 -0.42 0.74 16 31 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 305.15 15.07 4.60 4.60 Total: -1.00 -34.02 305.15 -5.86 -39.88 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -3.93 Total: 2.98 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.84 Total: -2.26 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.40 Total: -41.15 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.10 Total: -18.01 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.02 -5.86 -39.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427609359.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.369 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds