Wall clock time and date at job start Mon Mar 30 2020 00:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35944 * 117.00656 * 2 1 4 4 C 1.38734 * 120.02603 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.97120 * 179.97438 * 4 3 2 6 6 C 1.38482 * 120.03175 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.97206 * 179.97438 * 6 5 4 8 8 C 1.38432 * 120.05577 * 359.78943 * 6 5 4 9 9 C 1.38172 * 120.03031 * 0.46314 * 8 6 5 10 10 C 1.50703 * 120.01277 * 179.79239 * 9 8 6 11 11 C 1.50701 * 109.47064 * 264.72240 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46835 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00280 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99788 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15 21 21 H 1.48495 * 109.46968 * 209.99597 * 19 17 15 22 22 H 1.48499 * 109.47437 * 330.00066 * 19 17 15 23 23 H 1.08996 * 109.47161 * 59.99848 * 1 2 3 24 24 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47039 * 299.99874 * 1 2 3 26 26 H 1.08004 * 120.01233 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.98847 * 179.97438 * 5 4 3 28 28 H 1.07999 * 119.98211 * 180.23340 * 8 6 5 29 29 H 1.09002 * 109.47152 * 144.72333 * 10 9 8 30 30 H 1.09001 * 109.46980 * 24.72433 * 10 9 8 31 31 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 33 33 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 34 34 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9197 3.6051 0.0011 6 6 3.3027 3.6769 0.0016 7 9 3.9161 4.8806 0.0016 8 6 4.0572 2.5162 0.0060 9 6 3.4311 1.2845 0.0002 10 6 4.2529 0.0212 0.0003 11 6 4.4231 -0.4674 -1.4151 12 8 3.9264 0.1497 -2.3335 13 7 5.1281 -1.5896 -1.6604 14 6 5.2940 -2.0642 -3.0364 15 6 6.1157 -3.3275 -3.0363 16 1 6.4777 -3.7362 -2.1045 17 6 6.4052 -3.9616 -4.2259 18 7 5.9648 -3.4637 -5.3607 19 14 7.4243 -5.5272 -4.2259 20 1 6.5253 -6.7030 -4.1049 21 1 8.1909 -5.6188 -5.4944 22 1 8.3667 -5.5044 -3.0785 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2127 2.3195 0.0005 27 1 1.3323 4.5114 0.0011 28 1 5.1356 2.5736 0.0102 29 1 3.7453 -0.7424 0.5897 30 1 5.2317 0.2246 0.4347 31 1 5.5256 -2.0829 -0.9259 32 1 4.3153 -2.2678 -3.4711 33 1 5.8015 -1.3003 -3.6256 34 1 6.1682 -3.9100 -6.1976 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427609359.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:05 Heat of formation + Delta-G solvation = -127.158755 kcal Electronic energy + Delta-G solvation = -19588.663035 eV Core-core repulsion = 16207.151939 eV Total energy + Delta-G solvation = -3381.511097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.81681 -41.42734 -40.15622 -38.18411 -36.11555 -34.36915 -33.90053 -30.88985 -29.97752 -28.43433 -27.81256 -24.79123 -23.36322 -22.90613 -21.32489 -19.19506 -18.82937 -18.12326 -17.99763 -17.51905 -16.97367 -16.69920 -16.34537 -16.17828 -15.98193 -15.64436 -15.39124 -14.59401 -14.49660 -14.17229 -13.98095 -13.83323 -13.70984 -13.20504 -12.90103 -12.81106 -12.73198 -12.58971 -12.21752 -11.85966 -11.79247 -11.47355 -10.83272 -10.79362 -10.01974 -9.79664 -9.04831 -8.28217 -6.44974 0.11701 0.21520 1.43887 1.46445 1.57760 1.82769 2.28962 2.34264 2.45281 2.83667 3.06671 3.27776 3.57030 3.72393 4.01892 4.13125 4.20441 4.36092 4.41191 4.42976 4.47266 4.72062 4.73441 4.87238 5.09539 5.10978 5.14533 5.24759 5.30115 5.50851 5.72253 5.72387 5.86274 6.37912 6.66563 6.94854 7.24704 7.54142 8.84135 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027668 B = 0.004023 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.758437 B = 6957.730284 C = 7508.956048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.121 3.879 4 C -0.180 4.180 5 C -0.111 4.111 6 C 0.040 3.960 7 F -0.148 7.148 8 C -0.112 4.112 9 C -0.087 4.087 10 C -0.083 4.083 11 C 0.501 3.499 12 O -0.598 6.598 13 N -0.709 5.709 14 C 0.267 3.733 15 C -0.555 4.555 16 H 0.085 0.915 17 C 0.003 3.997 18 N -0.933 5.933 19 Si 0.986 3.014 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.254 1.254 23 H 0.058 0.942 24 H 0.113 0.887 25 H 0.081 0.919 26 H 0.167 0.833 27 H 0.164 0.836 28 H 0.149 0.851 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.409 0.591 32 H -0.016 1.016 33 H -0.015 1.015 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 9.201 16.690 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.075 3.925 4 C -0.199 4.199 5 C -0.129 4.129 6 C 0.021 3.979 7 F -0.127 7.127 8 C -0.131 4.131 9 C -0.088 4.088 10 C -0.122 4.122 11 C 0.288 3.712 12 O -0.480 6.480 13 N -0.359 5.359 14 C 0.144 3.856 15 C -0.593 4.593 16 H 0.103 0.897 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.808 3.192 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.178 1.178 23 H 0.077 0.923 24 H 0.131 0.869 25 H 0.099 0.901 26 H 0.184 0.816 27 H 0.181 0.819 28 H 0.167 0.833 29 H 0.143 0.857 30 H 0.151 0.849 31 H 0.245 0.755 32 H 0.002 0.998 33 H 0.003 0.997 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.343 9.440 15.850 20.679 hybrid contribution 0.480 -0.471 -0.506 0.841 sum -8.863 8.969 15.344 19.861 Atomic orbital electron populations 1.23381 0.76311 1.05571 1.02500 1.86087 1.23624 1.26523 1.88219 1.19065 0.91903 0.85435 0.96074 1.21343 1.01696 0.90466 1.06374 1.21195 0.92182 0.99738 0.99798 1.17672 0.91688 0.80219 1.08342 1.91459 1.83567 1.43071 1.94580 1.20996 1.01383 0.90180 1.00523 1.18653 0.91082 0.94527 1.04568 1.20521 1.03025 0.95972 0.92674 1.21277 0.77480 0.80289 0.92127 1.90637 1.50623 1.58208 1.48539 1.46174 1.53175 1.26074 1.10439 1.18510 0.94403 0.93542 0.79109 1.21638 1.34136 1.08962 0.94576 0.89685 1.26082 0.97067 1.01886 0.94593 1.70144 1.46436 1.41720 0.98834 0.85147 0.78278 0.77684 0.78047 1.19568 1.21026 1.17802 0.92342 0.86891 0.90087 0.81580 0.81873 0.83293 0.85732 0.84867 0.75501 0.99782 0.99662 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -8.95 9.63 -92.92 -0.89 -9.84 16 3 C 0.12 3.33 6.66 22.49 0.15 3.48 16 4 C -0.18 -3.93 9.04 22.36 0.20 -3.73 16 5 C -0.11 -2.40 10.02 22.30 0.22 -2.18 16 6 C 0.04 1.04 7.30 22.37 0.16 1.21 16 7 F -0.15 -3.93 17.27 44.97 0.78 -3.15 16 8 C -0.11 -3.07 9.65 22.30 0.22 -2.85 16 9 C -0.09 -2.53 4.39 -19.77 -0.09 -2.62 16 10 C -0.08 -2.31 5.55 29.10 0.16 -2.15 16 11 C 0.50 20.59 7.82 87.66 0.69 21.28 16 12 O -0.60 -30.73 16.03 -3.03 -0.05 -30.78 16 13 N -0.71 -30.49 5.55 -466.78 -2.59 -33.08 16 14 C 0.27 14.98 5.43 85.63 0.46 15.44 16 15 C -0.56 -30.50 9.28 25.60 0.24 -30.26 16 16 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 17 C 0.00 0.17 5.46 84.66 0.46 0.64 16 18 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 19 Si 0.99 42.47 29.54 68.60 2.03 44.50 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 23 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 24 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.08 0.92 7.66 -2.39 -0.02 0.90 16 26 H 0.17 2.46 6.30 -2.91 -0.02 2.44 16 27 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 28 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 29 H 0.12 2.99 7.69 -2.39 -0.02 2.97 16 30 H 0.13 2.78 8.05 -2.39 -0.02 2.76 16 31 H 0.41 14.31 8.32 -92.71 -0.77 13.54 16 32 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 33 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 34 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -76.80 305.15 3.90 -72.89 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.36 Total: 16.45 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 3.99 Total: -0.34 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -2.30 Total: -89.72 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -0.94 Total: -40.62 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -76.80 3.90 -72.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427609359.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.267 kcal (2) G-P(sol) polarization free energy of solvation -76.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds