Wall clock time and date at job start Mon Mar 30 2020 00:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47061 * 119.99902 * 8 6 4 11 11 H 1.48503 * 109.47075 * 240.00004 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 2 16 16 C 1.38264 * 119.93461 * 269.72057 * 15 14 12 17 17 C 1.38179 * 120.09375 * 179.77027 * 16 15 14 18 18 C 1.38655 * 119.96828 * 0.50833 * 17 16 15 19 19 O 1.35961 * 120.06527 * 179.72648 * 18 17 16 20 20 C 1.38908 * 119.87626 * 359.74529 * 18 17 16 21 21 F 1.35102 * 120.04855 * 179.97438 * 20 18 17 22 22 C 1.38250 * 119.93793 * 90.00078 * 15 14 12 23 23 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 24 24 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 25 25 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 26 26 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 27 27 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 28 28 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 30 30 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 31 31 H 1.08002 * 119.95263 * 0.02562 * 16 15 14 32 32 H 1.07997 * 120.01636 * 180.25143 * 17 16 15 33 33 H 0.96703 * 113.99576 * 270.02356 * 19 18 17 34 34 H 1.08005 * 119.98588 * 359.95352 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.8598 2.4169 -4.3674 10 1 2.8005 4.7380 -3.6667 11 1 4.9001 3.5247 -3.6680 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3649 -3.6176 -0.0103 16 6 2.8090 -4.1405 -1.2108 17 6 3.7106 -5.1876 -1.2192 18 6 4.1628 -5.7218 -0.0223 19 8 5.0458 -6.7557 -0.0283 20 6 3.7119 -5.1990 1.1831 21 9 4.1498 -5.7172 2.3513 22 6 2.8132 -4.1473 1.1854 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3632 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5137 27 1 3.1499 1.1385 0.5139 28 1 4.0317 4.4431 -0.8505 29 1 0.7588 -2.5340 0.8844 30 1 0.7590 -2.5261 -0.8955 31 1 2.4538 -3.7273 -2.1432 32 1 4.0597 -5.5924 -2.1576 33 1 4.6293 -7.6285 -0.0326 34 1 2.4620 -3.7396 2.1219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448787834.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:38 Heat of formation + Delta-G solvation = -98.702686 kcal Electronic energy + Delta-G solvation = -19690.829279 eV Core-core repulsion = 16310.552130 eV Total energy + Delta-G solvation = -3380.277149 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.86513 -39.88235 -38.77294 -36.92703 -34.80467 -32.72984 -31.85280 -30.65233 -28.25971 -26.81311 -25.58190 -23.12762 -22.91113 -21.60087 -18.71574 -18.52342 -16.97146 -16.76838 -16.51021 -16.35058 -15.96498 -15.34054 -15.08869 -14.71303 -14.30545 -14.02673 -13.92936 -13.35850 -12.87999 -12.79852 -12.29546 -12.21369 -11.96955 -11.71482 -11.68031 -11.51072 -11.19408 -10.87234 -10.68541 -10.59008 -10.17399 -9.62930 -9.09601 -8.88617 -8.47081 -8.44537 -7.67271 -6.05772 -4.10670 1.00960 1.14932 3.28660 3.33213 3.36816 3.38801 3.41870 3.86067 4.04121 4.26934 4.43761 4.62551 4.75146 5.15789 5.18627 5.21212 5.30078 5.39517 5.51130 5.60826 5.77396 5.89203 5.92193 6.00573 6.12498 6.17707 6.46497 6.67920 7.02787 7.42572 7.45068 7.51126 7.90458 8.21521 8.37567 8.88316 9.06015 9.54574 11.02436 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025547 B = 0.004379 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.768091 B = 6392.675978 C = 6775.113887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.504 3.496 13 O -0.532 6.532 14 C -0.106 4.106 15 C -0.032 4.032 16 C -0.098 4.098 17 C -0.114 4.114 18 C 0.064 3.936 19 O -0.489 6.489 20 C 0.074 3.926 21 F -0.136 7.136 22 C -0.127 4.127 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.263 0.737 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.387 0.613 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.460 -17.839 1.179 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.290 3.710 13 O -0.409 6.409 14 C -0.146 4.146 15 C -0.033 4.033 16 C -0.117 4.117 17 C -0.133 4.133 18 C 0.019 3.981 19 O -0.298 6.298 20 C 0.054 3.946 21 F -0.115 7.115 22 C -0.145 4.145 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.242 0.758 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.276 -17.208 1.276 18.361 hybrid contribution -0.084 0.031 -0.739 0.745 sum -6.360 -17.177 0.537 18.324 Atomic orbital electron populations 1.21661 0.81422 1.02653 1.00469 1.48165 1.06177 1.07756 1.71458 1.19304 0.92585 0.78012 0.97559 1.21459 1.36486 1.06271 0.92277 0.92419 1.24946 0.95337 0.96413 0.97443 1.69940 1.38365 1.14355 1.30690 0.86442 0.78124 0.78294 0.84550 1.19816 1.20951 1.20857 1.20110 0.88128 0.84679 0.78090 1.90715 1.13712 1.87039 1.49463 1.20803 0.97400 0.91487 1.04929 1.19258 0.96866 0.94800 0.92332 1.20988 0.96940 0.95603 0.98141 1.21241 0.96925 0.97870 0.97220 1.18389 0.94754 0.93768 0.91229 1.84908 1.32584 1.15984 1.96318 1.18003 0.98298 0.97314 0.80939 1.91478 1.88243 1.85886 1.45883 1.20907 0.98153 0.95883 0.99602 0.93688 0.90698 0.92405 0.94974 0.93828 0.92744 0.88276 0.87948 0.84830 0.84447 0.75787 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.25 59.85 0.61 1.82 16 2 N -0.60 -12.38 2.86 -182.95 -0.52 -12.90 16 3 C 0.24 6.35 5.16 -5.20 -0.03 6.33 16 4 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.50 10.08 7.67 -10.98 -0.08 9.99 16 13 O -0.53 -13.32 15.61 5.55 0.09 -13.23 16 14 C -0.11 -1.43 4.38 -29.03 -0.13 -1.56 16 15 C -0.03 -0.45 4.37 -104.61 -0.46 -0.91 16 16 C -0.10 -1.29 9.69 -39.59 -0.38 -1.67 16 17 C -0.11 -1.40 9.98 -39.45 -0.39 -1.79 16 18 C 0.06 0.85 6.71 -39.18 -0.26 0.59 16 19 O -0.49 -5.74 13.37 -19.62 -0.26 -6.00 16 20 C 0.07 1.06 7.31 -39.30 -0.29 0.77 16 21 F -0.14 -2.01 17.11 2.25 0.04 -1.97 16 22 C -0.13 -1.77 9.67 -39.54 -0.38 -2.16 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 25 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 26 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 27 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.10 1.06 8.05 -51.93 -0.42 0.64 16 30 H 0.10 1.12 7.34 -51.93 -0.38 0.74 16 31 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.39 2.40 9.06 45.56 0.41 2.81 16 34 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 306.03 15.07 4.61 4.61 Total: -1.00 -35.57 306.03 -5.73 -41.29 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -3.18 Total: -0.58 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -2.21 Total: -2.10 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.21 Total: -38.80 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.18 Total: -19.23 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.57 -5.73 -41.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448787834.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.408 kcal (2) G-P(sol) polarization free energy of solvation -35.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds