Wall clock time and date at job start Mon Mar 30 2020 00:54:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.46499 * 119.99537 * 2 1
4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1
5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2
6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2
7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3
8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3
9 9 H 1.48503 * 109.47135 * 359.97438 * 8 6 4
10 10 H 1.48493 * 109.47061 * 119.99902 * 8 6 4
11 11 H 1.48503 * 109.47075 * 240.00004 * 8 6 4
12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3
13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1
14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1
15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 2
16 16 C 1.38264 * 119.93461 * 269.72057 * 15 14 12
17 17 C 1.38179 * 120.09375 * 179.77027 * 16 15 14
18 18 C 1.38655 * 119.96828 * 0.50833 * 17 16 15
19 19 O 1.35961 * 120.06527 * 179.72648 * 18 17 16
20 20 C 1.38908 * 119.87626 * 359.74529 * 18 17 16
21 21 F 1.35102 * 120.04855 * 179.97438 * 20 18 17
22 22 C 1.38250 * 119.93793 * 90.00078 * 15 14 12
23 23 H 1.08998 * 109.46921 * 269.99744 * 1 2 3
24 24 H 1.08994 * 109.46996 * 30.00327 * 1 2 3
25 25 H 1.09001 * 109.46578 * 150.00190 * 1 2 3
26 26 H 1.09001 * 109.47567 * 29.99407 * 3 2 1
27 27 H 1.09005 * 109.47076 * 149.99913 * 3 2 1
28 28 H 0.96991 * 119.99957 * 180.02562 * 7 6 4
29 29 H 1.09004 * 109.46965 * 299.72211 * 14 12 2
30 30 H 1.08994 * 109.46990 * 59.72065 * 14 12 2
31 31 H 1.08002 * 119.95263 * 0.02562 * 16 15 14
32 32 H 1.07997 * 120.01636 * 180.25143 * 17 16 15
33 33 H 0.96703 * 113.99576 * 270.02356 * 19 18 17
34 34 H 1.08005 * 119.98588 * 359.95352 * 22 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1974 1.2688 0.0000
4 6 2.4486 1.7037 -1.4208
5 1 2.0975 1.0961 -2.2417
6 6 3.1268 2.8775 -1.6728
7 7 3.5549 3.6172 -0.6732
8 14 3.4376 3.4170 -3.4340
9 1 2.8598 2.4169 -4.3674
10 1 2.8005 4.7380 -3.6667
11 1 4.9001 3.5247 -3.6680
12 6 2.1390 -1.1672 0.0005
13 8 3.3518 -1.1671 0.0010
14 6 1.3855 -2.4723 -0.0053
15 6 2.3649 -3.6176 -0.0103
16 6 2.8090 -4.1405 -1.2108
17 6 3.7106 -5.1876 -1.2192
18 6 4.1628 -5.7218 -0.0223
19 8 5.0458 -6.7557 -0.0283
20 6 3.7119 -5.1990 1.1831
21 9 4.1498 -5.7172 2.3513
22 6 2.8132 -4.1473 1.1854
23 1 -0.3633 0.0000 1.0277
24 1 -0.3633 0.8899 -0.5139
25 1 -0.3632 -0.8900 -0.5138
26 1 1.6083 2.0285 0.5137
27 1 3.1499 1.1385 0.5139
28 1 4.0317 4.4431 -0.8505
29 1 0.7588 -2.5340 0.8844
30 1 0.7590 -2.5261 -0.8955
31 1 2.4538 -3.7273 -2.1432
32 1 4.0597 -5.5924 -2.1576
33 1 4.6293 -7.6285 -0.0326
34 1 2.4620 -3.7396 2.1219
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000448787834.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:54:38
Heat of formation + Delta-G solvation = -98.702686 kcal
Electronic energy + Delta-G solvation = -19690.829279 eV
Core-core repulsion = 16310.552130 eV
Total energy + Delta-G solvation = -3380.277149 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.106 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-48.86513 -39.88235 -38.77294 -36.92703 -34.80467 -32.72984 -31.85280 -30.65233
-28.25971 -26.81311 -25.58190 -23.12762 -22.91113 -21.60087 -18.71574 -18.52342
-16.97146 -16.76838 -16.51021 -16.35058 -15.96498 -15.34054 -15.08869 -14.71303
-14.30545 -14.02673 -13.92936 -13.35850 -12.87999 -12.79852 -12.29546 -12.21369
-11.96955 -11.71482 -11.68031 -11.51072 -11.19408 -10.87234 -10.68541 -10.59008
-10.17399 -9.62930 -9.09601 -8.88617 -8.47081 -8.44537 -7.67271 -6.05772
-4.10670 1.00960 1.14932 3.28660 3.33213 3.36816 3.38801 3.41870
3.86067 4.04121 4.26934 4.43761 4.62551 4.75146 5.15789 5.18627
5.21212 5.30078 5.39517 5.51130 5.60826 5.77396 5.89203 5.92193
6.00573 6.12498 6.17707 6.46497 6.67920 7.02787 7.42572 7.45068
7.51126 7.90458 8.21521 8.37567 8.88316 9.06015 9.54574 11.02436
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.025547 B = 0.004379 C = 0.004132
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1095.768091 B = 6392.675978 C = 6775.113887
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.082 3.918
2 N -0.603 5.603
3 C 0.244 3.756
4 C -0.526 4.526
5 H 0.058 0.942
6 C 0.061 3.939
7 N -0.894 5.894
8 Si 0.898 3.102
9 H -0.274 1.274
10 H -0.283 1.283
11 H -0.283 1.283
12 C 0.504 3.496
13 O -0.532 6.532
14 C -0.106 4.106
15 C -0.032 4.032
16 C -0.098 4.098
17 C -0.114 4.114
18 C 0.064 3.936
19 O -0.489 6.489
20 C 0.074 3.926
21 F -0.136 7.136
22 C -0.127 4.127
23 H 0.045 0.955
24 H 0.074 0.926
25 H 0.057 0.943
26 H 0.032 0.968
27 H 0.044 0.956
28 H 0.263 0.737
29 H 0.099 0.901
30 H 0.102 0.898
31 H 0.134 0.866
32 H 0.138 0.862
33 H 0.387 0.613
34 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.460 -17.839 1.179 19.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.336 5.336
3 C 0.125 3.875
4 C -0.565 4.565
5 H 0.076 0.924
6 C -0.141 4.141
7 N -0.534 5.534
8 Si 0.726 3.274
9 H -0.198 1.198
10 H -0.210 1.210
11 H -0.209 1.209
12 C 0.290 3.710
13 O -0.409 6.409
14 C -0.146 4.146
15 C -0.033 4.033
16 C -0.117 4.117
17 C -0.133 4.133
18 C 0.019 3.981
19 O -0.298 6.298
20 C 0.054 3.946
21 F -0.115 7.115
22 C -0.145 4.145
23 H 0.063 0.937
24 H 0.093 0.907
25 H 0.076 0.924
26 H 0.050 0.950
27 H 0.062 0.938
28 H 0.073 0.927
29 H 0.117 0.883
30 H 0.121 0.879
31 H 0.152 0.848
32 H 0.156 0.844
33 H 0.242 0.758
34 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -6.276 -17.208 1.276 18.361
hybrid contribution -0.084 0.031 -0.739 0.745
sum -6.360 -17.177 0.537 18.324
Atomic orbital electron populations
1.21661 0.81422 1.02653 1.00469 1.48165 1.06177 1.07756 1.71458
1.19304 0.92585 0.78012 0.97559 1.21459 1.36486 1.06271 0.92277
0.92419 1.24946 0.95337 0.96413 0.97443 1.69940 1.38365 1.14355
1.30690 0.86442 0.78124 0.78294 0.84550 1.19816 1.20951 1.20857
1.20110 0.88128 0.84679 0.78090 1.90715 1.13712 1.87039 1.49463
1.20803 0.97400 0.91487 1.04929 1.19258 0.96866 0.94800 0.92332
1.20988 0.96940 0.95603 0.98141 1.21241 0.96925 0.97870 0.97220
1.18389 0.94754 0.93768 0.91229 1.84908 1.32584 1.15984 1.96318
1.18003 0.98298 0.97314 0.80939 1.91478 1.88243 1.85886 1.45883
1.20907 0.98153 0.95883 0.99602 0.93688 0.90698 0.92405 0.94974
0.93828 0.92744 0.88276 0.87948 0.84830 0.84447 0.75787 0.84458
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.21 10.25 59.85 0.61 1.82 16
2 N -0.60 -12.38 2.86 -182.95 -0.52 -12.90 16
3 C 0.24 6.35 5.16 -5.20 -0.03 6.33 16
4 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16
5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16
6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16
7 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16
8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16
9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16
10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
12 C 0.50 10.08 7.67 -10.98 -0.08 9.99 16
13 O -0.53 -13.32 15.61 5.55 0.09 -13.23 16
14 C -0.11 -1.43 4.38 -29.03 -0.13 -1.56 16
15 C -0.03 -0.45 4.37 -104.61 -0.46 -0.91 16
16 C -0.10 -1.29 9.69 -39.59 -0.38 -1.67 16
17 C -0.11 -1.40 9.98 -39.45 -0.39 -1.79 16
18 C 0.06 0.85 6.71 -39.18 -0.26 0.59 16
19 O -0.49 -5.74 13.37 -19.62 -0.26 -6.00 16
20 C 0.07 1.06 7.31 -39.30 -0.29 0.77 16
21 F -0.14 -2.01 17.11 2.25 0.04 -1.97 16
22 C -0.13 -1.77 9.67 -39.54 -0.38 -2.16 16
23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
24 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16
25 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16
26 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16
27 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16
28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
29 H 0.10 1.06 8.05 -51.93 -0.42 0.64 16
30 H 0.10 1.12 7.34 -51.93 -0.38 0.74 16
31 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16
32 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16
33 H 0.39 2.40 9.06 45.56 0.41 2.81 16
34 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16
LS Contribution 306.03 15.07 4.61 4.61
Total: -1.00 -35.57 306.03 -5.73 -41.29
By element:
Atomic # 1 Polarization: 2.60 SS G_CDS: -3.18 Total: -0.58 kcal
Atomic # 6 Polarization: 0.12 SS G_CDS: -2.21 Total: -2.10 kcal
Atomic # 7 Polarization: -39.02 SS G_CDS: 0.21 Total: -38.80 kcal
Atomic # 8 Polarization: -19.06 SS G_CDS: -0.18 Total: -19.23 kcal
Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal
Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal
Total LS contribution 4.61 Total: 4.61 kcal
Total: -35.57 -5.73 -41.29 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000448787834.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.408 kcal
(2) G-P(sol) polarization free energy of solvation -35.569 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.977 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.703 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds