Wall clock time and date at job start Mon Mar 30 2020 00:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47061 * 119.99902 * 8 6 4 11 11 H 1.48503 * 109.47075 * 240.00004 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 2 16 16 C 1.38264 * 119.93461 * 269.72057 * 15 14 12 17 17 C 1.38179 * 120.09375 * 179.77027 * 16 15 14 18 18 C 1.38655 * 119.96828 * 0.50833 * 17 16 15 19 19 O 1.35961 * 120.06527 * 179.72648 * 18 17 16 20 20 C 1.38908 * 119.87626 * 359.74529 * 18 17 16 21 21 F 1.35102 * 120.04855 * 179.97438 * 20 18 17 22 22 C 1.38250 * 119.93793 * 90.00078 * 15 14 12 23 23 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 24 24 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 25 25 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 26 26 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 27 27 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 28 28 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 30 30 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 31 31 H 1.08002 * 119.95263 * 0.02562 * 16 15 14 32 32 H 1.07997 * 120.01636 * 180.25143 * 17 16 15 33 33 H 0.96703 * 113.99576 * 270.02356 * 19 18 17 34 34 H 1.08005 * 119.98588 * 359.95352 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.8598 2.4169 -4.3674 10 1 2.8005 4.7380 -3.6667 11 1 4.9001 3.5247 -3.6680 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3649 -3.6176 -0.0103 16 6 2.8090 -4.1405 -1.2108 17 6 3.7106 -5.1876 -1.2192 18 6 4.1628 -5.7218 -0.0223 19 8 5.0458 -6.7557 -0.0283 20 6 3.7119 -5.1990 1.1831 21 9 4.1498 -5.7172 2.3513 22 6 2.8132 -4.1473 1.1854 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3632 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5137 27 1 3.1499 1.1385 0.5139 28 1 4.0317 4.4431 -0.8505 29 1 0.7588 -2.5340 0.8844 30 1 0.7590 -2.5261 -0.8955 31 1 2.4538 -3.7273 -2.1432 32 1 4.0597 -5.5924 -2.1576 33 1 4.6293 -7.6285 -0.0326 34 1 2.4620 -3.7396 2.1219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448787834.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:37 Heat of formation + Delta-G solvation = -124.349546 kcal Electronic energy + Delta-G solvation = -19691.941410 eV Core-core repulsion = 16310.552130 eV Total energy + Delta-G solvation = -3381.389280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.94857 -41.07056 -40.08906 -37.94158 -36.50715 -34.74169 -33.04502 -31.65553 -30.00851 -28.05526 -27.10896 -24.84455 -23.99393 -22.80472 -20.05778 -19.62225 -18.68782 -18.04458 -17.83196 -17.75216 -17.06071 -16.93307 -16.35315 -16.11124 -15.95663 -15.11144 -14.93654 -14.55318 -14.38027 -14.28797 -13.78432 -13.45788 -13.42174 -13.13465 -12.93110 -12.75576 -12.72067 -12.53910 -12.43026 -12.18893 -11.65705 -11.61991 -10.65297 -10.64226 -9.92921 -9.51807 -9.37934 -8.21632 -6.36537 0.00388 0.14965 1.37035 1.39742 1.51216 1.88229 2.24504 2.39291 2.67361 2.95726 3.08266 3.30243 3.60096 3.77884 3.95247 4.20358 4.22145 4.41303 4.51149 4.60874 4.78883 4.82045 4.94497 5.00974 5.02177 5.06672 5.15989 5.25487 5.46139 5.58091 5.75224 5.86247 6.07231 6.71255 6.72036 6.82962 7.29991 7.52729 8.85639 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025547 B = 0.004379 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.768091 B = 6392.675978 C = 6775.113887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.005 3.995 7 N -0.931 5.931 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.270 1.270 11 H -0.285 1.285 12 C 0.495 3.505 13 O -0.595 6.595 14 C -0.088 4.088 15 C -0.050 4.050 16 C -0.102 4.102 17 C -0.116 4.116 18 C 0.065 3.935 19 O -0.500 6.500 20 C 0.049 3.951 21 F -0.145 7.145 22 C -0.134 4.134 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.022 0.978 27 H -0.006 1.006 28 H 0.266 0.734 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.150 0.850 32 H 0.163 0.837 33 H 0.411 0.589 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.134 -19.116 -0.468 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.194 4.194 7 N -0.571 5.571 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.195 1.195 11 H -0.211 1.211 12 C 0.284 3.716 13 O -0.476 6.476 14 C -0.128 4.128 15 C -0.051 4.051 16 C -0.120 4.120 17 C -0.134 4.134 18 C 0.020 3.980 19 O -0.313 6.313 20 C 0.029 3.971 21 F -0.124 7.124 22 C -0.153 4.153 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.120 0.880 26 H 0.040 0.960 27 H 0.012 0.988 28 H 0.075 0.925 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.168 0.832 32 H 0.180 0.820 33 H 0.270 0.730 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.020 -18.525 -0.366 20.190 hybrid contribution 0.457 0.365 -0.180 0.612 sum -7.563 -18.160 -0.546 19.679 Atomic orbital electron populations 1.21997 0.77590 1.04347 1.02728 1.48189 1.08540 1.06185 1.71339 1.18742 0.91028 0.80617 0.96022 1.21757 1.36519 1.06428 0.93092 0.92494 1.25892 0.94978 0.96539 1.01964 1.70066 1.39100 1.14880 1.33077 0.85356 0.77741 0.78474 0.79165 1.18727 1.19480 1.21063 1.21267 0.87815 0.86356 0.76175 1.90682 1.16766 1.88094 1.52099 1.20781 0.96953 0.86778 1.08240 1.19412 0.97757 0.95317 0.92625 1.21299 0.96689 0.95479 0.98549 1.21518 0.96491 0.97525 0.97852 1.18545 0.94224 0.94053 0.91208 1.84838 1.33010 1.17180 1.96246 1.18272 0.99394 0.98227 0.81189 1.91448 1.88464 1.86069 1.46377 1.21083 0.98128 0.95853 1.00224 0.91112 0.91751 0.87986 0.95966 0.98787 0.92493 0.84814 0.84445 0.83206 0.81995 0.72977 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.00 10.25 127.77 1.31 3.31 16 2 N -0.61 -24.73 2.86 -851.12 -2.43 -27.16 16 3 C 0.26 13.83 5.16 85.63 0.44 14.27 16 4 C -0.54 -30.83 9.39 25.60 0.24 -30.59 16 5 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 6 C 0.00 0.28 5.46 84.66 0.46 0.74 16 7 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 8 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 9 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 C 0.49 19.40 7.67 87.66 0.67 20.07 16 13 O -0.60 -30.51 15.61 -3.04 -0.05 -30.56 16 14 C -0.09 -2.10 4.38 29.10 0.13 -1.98 16 15 C -0.05 -1.32 4.37 -19.86 -0.09 -1.41 16 16 C -0.10 -2.44 9.69 22.26 0.22 -2.23 16 17 C -0.12 -2.60 9.98 22.36 0.22 -2.38 16 18 C 0.07 1.65 6.71 22.53 0.15 1.80 16 19 O -0.50 -10.99 13.37 -93.11 -1.24 -12.24 16 20 C 0.05 1.37 7.31 22.45 0.16 1.54 16 21 F -0.14 -4.27 17.11 44.97 0.77 -3.50 16 22 C -0.13 -3.64 9.67 22.29 0.22 -3.43 16 23 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.06 1.86 8.07 -2.39 -0.02 1.84 16 25 H 0.10 1.81 6.43 -2.39 -0.02 1.80 16 26 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 27 H -0.01 -0.38 7.42 -2.38 -0.02 -0.40 16 28 H 0.27 15.18 8.31 -92.72 -0.77 14.41 16 29 H 0.13 2.27 8.05 -2.38 -0.02 2.25 16 30 H 0.14 2.33 7.34 -2.39 -0.02 2.31 16 31 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 33 H 0.41 4.34 9.06 -74.06 -0.67 3.67 16 34 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -80.85 306.03 3.95 -76.90 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.46 Total: 6.54 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 4.14 Total: -0.27 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -2.15 Total: -83.61 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -1.29 Total: -42.80 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.77 Total: -3.50 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -80.85 3.95 -76.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448787834.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.452 kcal (2) G-P(sol) polarization free energy of solvation -80.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds