Wall clock time and date at job start Mon Mar 30 2020 00:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.50695 * 109.46944 * 66.04457 * 3 2 1 5 5 H 1.08001 * 120.00376 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99938 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99874 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00221 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.46998 * 89.99982 * 8 6 4 10 10 H 1.48503 * 109.46987 * 209.99965 * 8 6 4 11 11 H 1.48499 * 109.46815 * 330.00121 * 8 6 4 12 12 C 1.46897 * 110.99814 * 236.04544 * 2 1 3 13 13 C 1.50694 * 109.47330 * 293.95439 * 12 2 1 14 14 C 1.38233 * 120.00154 * 269.72682 * 13 12 2 15 15 C 1.38238 * 120.00052 * 179.74264 * 14 13 12 16 16 C 1.38236 * 119.99929 * 0.54924 * 15 14 13 17 17 S 1.76196 * 119.99848 * 179.72248 * 16 15 14 18 18 C 1.81402 * 103.00110 * 269.98013 * 17 16 15 19 19 O 1.42104 * 103.00345 * 23.83599 * 17 16 15 20 20 C 1.38233 * 119.99890 * 359.70917 * 16 15 14 21 21 C 1.38231 * 120.00145 * 0.02562 * 20 16 15 22 22 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 23 23 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 24 24 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 25 25 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 26 26 H 1.09002 * 109.46955 * 306.04307 * 3 2 1 27 27 H 0.97002 * 120.00020 * 179.97438 * 7 6 4 28 28 H 1.09009 * 109.47296 * 53.95365 * 12 2 1 29 29 H 1.09002 * 109.47055 * 173.95064 * 12 2 1 30 30 H 1.08007 * 119.99755 * 359.97438 * 14 13 12 31 31 H 1.08003 * 119.99742 * 180.27410 * 15 14 13 32 32 H 1.09001 * 109.46899 * 60.00280 * 18 17 16 33 33 H 1.09004 * 109.47003 * 180.02562 * 18 17 16 34 34 H 1.08999 * 109.47273 * 300.00169 * 18 17 16 35 35 H 1.08002 * 119.99743 * 179.97438 * 20 16 15 36 36 H 1.07997 * 120.00104 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0746 1.5113 2.0488 6 6 2.0277 3.3492 1.5289 7 7 2.7129 4.0016 0.6154 8 14 1.5839 4.1865 3.1386 9 1 2.6608 3.9494 4.1333 10 1 1.4322 5.6463 2.9119 11 1 0.3060 3.6295 3.6504 12 6 1.9954 -0.7660 -1.1376 13 6 1.6369 -2.2204 -0.9729 14 6 2.4965 -3.0729 -0.3056 15 6 2.1651 -4.4059 -0.1499 16 6 0.9795 -4.8888 -0.6713 17 16 0.5606 -6.5894 -0.4792 18 6 1.2839 -7.3571 -1.9551 19 8 1.3052 -6.9745 0.6682 20 6 0.1224 -4.0375 -1.3433 21 6 0.4512 -2.7033 -1.4942 22 1 -0.3634 -1.0251 0.0708 23 1 -0.3633 0.5740 0.8525 24 1 -0.3633 0.4513 -0.9233 25 1 3.0798 1.3444 -0.1083 26 1 1.5612 1.9274 -0.8310 27 1 2.9875 4.9177 0.7773 28 1 1.5611 -0.3872 -2.0629 29 1 3.0797 -0.6611 -1.1757 30 1 3.4252 -2.6966 0.0974 31 1 2.8347 -5.0709 0.3753 32 1 2.3608 -7.1891 -1.9612 33 1 1.0830 -8.4284 -1.9428 34 1 0.8421 -6.9152 -2.8481 35 1 -0.8037 -4.4149 -1.7510 36 1 -0.2182 -2.0383 -2.0195 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000505312619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:59 Heat of formation + Delta-G solvation = -8.386844 kcal Electronic energy + Delta-G solvation = -17541.080175 eV Core-core repulsion = 14730.932591 eV Total energy + Delta-G solvation = -2810.147584 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.29986 -36.40471 -35.81517 -32.79395 -31.34521 -30.88544 -29.01446 -27.25277 -26.71451 -23.99811 -22.61884 -21.51492 -20.18122 -18.14282 -16.71920 -16.35466 -15.50374 -15.20830 -15.00798 -14.82823 -14.31329 -14.08473 -13.88998 -13.69558 -13.31056 -13.15401 -12.71855 -12.43537 -12.05882 -11.95318 -11.64731 -11.35414 -11.23180 -10.97099 -10.80536 -10.66274 -10.52018 -10.26253 -9.89291 -9.28689 -8.96036 -8.83551 -8.48614 -8.43172 -7.31057 -6.05577 -4.07006 0.93951 1.48586 1.81173 2.58640 3.31243 3.37043 3.40823 3.64301 3.87846 4.41562 4.85444 4.94805 5.00120 5.03394 5.04974 5.18606 5.31082 5.50833 5.51729 5.72356 5.79710 5.86401 6.06902 6.13488 6.18026 6.29165 6.30257 6.39529 6.71058 6.79114 7.03725 7.22457 7.27748 7.75767 8.02565 8.13770 8.48942 9.00519 9.57345 11.05327 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.041067 B = 0.003522 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.649130 B = 7947.224158 C = 8148.918887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.534 5.534 3 C 0.193 3.807 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.082 3.918 13 C -0.021 4.021 14 C -0.116 4.116 15 C -0.054 4.054 16 C -0.471 4.471 17 S 1.330 4.670 18 C -0.499 4.499 19 O -0.861 6.861 20 C -0.048 4.048 21 C -0.133 4.133 22 H 0.049 0.951 23 H 0.075 0.925 24 H 0.011 0.989 25 H 0.030 0.970 26 H -0.008 1.008 27 H 0.262 0.738 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 -19.535 -8.337 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.258 5.258 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.046 4.046 13 C -0.022 4.022 14 C -0.135 4.135 15 C -0.073 4.073 16 C -0.568 4.568 17 S 1.527 4.473 18 C -0.655 4.655 19 O -0.857 6.857 20 C -0.067 4.067 21 C -0.153 4.153 22 H 0.068 0.932 23 H 0.094 0.906 24 H 0.030 0.970 25 H 0.048 0.952 26 H 0.010 0.990 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.150 0.850 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.929 -20.016 -7.203 22.702 hybrid contribution 1.925 1.563 -0.136 2.483 sum -6.004 -18.453 -7.339 20.747 Atomic orbital electron populations 1.22302 0.88738 0.99866 1.00556 1.62158 1.07237 1.17748 1.38674 1.19769 0.95405 0.81208 0.96831 1.21150 1.34922 0.96916 1.01627 0.91808 1.24993 0.95262 0.97317 0.97047 1.69959 1.38366 1.11509 1.34053 0.86478 0.78918 0.78382 0.83527 1.20595 1.21294 1.19812 1.21160 1.00761 0.89080 0.93609 1.20225 0.93255 0.95783 0.92920 1.21170 1.00468 0.93008 0.98903 1.21049 0.95101 0.95931 0.95258 1.27402 1.02049 1.17514 1.09883 1.69310 1.14452 0.81092 0.82407 1.27783 1.09859 1.09767 1.18141 1.93104 1.73700 1.79065 1.39784 1.20721 0.97654 0.93018 0.95300 1.21201 0.96940 0.95660 1.01501 0.93246 0.90638 0.97038 0.95196 0.98986 0.92890 0.94652 0.90315 0.85615 0.85976 0.90136 0.87951 0.87216 0.85001 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 8.96 60.07 0.54 1.20 16 2 N -0.53 -11.58 4.74 -245.82 -1.17 -12.74 16 3 C 0.19 5.02 4.72 -4.98 -0.02 4.99 16 4 C -0.51 -14.33 8.46 -34.44 -0.29 -14.62 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 6 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.08 1.47 5.12 -4.98 -0.03 1.44 16 13 C -0.02 -0.33 4.88 -104.63 -0.51 -0.84 16 14 C -0.12 -1.81 9.70 -39.58 -0.38 -2.19 16 15 C -0.05 -0.79 9.44 -39.58 -0.37 -1.17 16 16 C -0.47 -5.49 5.61 -39.58 -0.22 -5.71 16 17 S 1.33 11.17 14.19 -107.50 -1.53 9.64 16 18 C -0.50 -3.49 10.70 101.05 1.08 -2.41 16 19 O -0.86 -13.18 16.90 -35.23 -0.60 -13.78 16 20 C -0.05 -0.49 9.75 -39.59 -0.39 -0.87 16 21 C -0.13 -1.72 7.97 -39.58 -0.32 -2.03 16 22 H 0.05 0.84 6.17 -51.93 -0.32 0.52 16 23 H 0.07 1.59 6.76 -51.93 -0.35 1.24 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 26 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.04 0.60 8.07 -51.92 -0.42 0.19 16 29 H 0.08 1.41 7.87 -51.93 -0.41 1.00 16 30 H 0.13 1.94 8.06 -52.48 -0.42 1.51 16 31 H 0.12 1.84 7.45 -52.48 -0.39 1.45 16 32 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.10 0.58 8.14 -51.92 -0.42 0.15 16 34 H 0.11 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.12 1.43 8.03 -52.49 -0.42 1.01 16 LS Contribution 315.27 15.07 4.75 4.75 Total: -1.00 -36.17 315.27 -9.02 -45.19 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -5.19 Total: -3.06 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -1.01 Total: -20.74 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: -0.43 Total: -38.73 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.60 Total: -13.78 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 11.17 SS G_CDS: -1.53 Total: 9.64 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -36.17 -9.02 -45.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505312619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.800 kcal (2) G-P(sol) polarization free energy of solvation -36.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds