Wall clock time and date at job start Mon Mar 30 2020 00:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.50695 * 109.46944 * 66.04457 * 3 2 1 5 5 H 1.08001 * 120.00376 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99938 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99874 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00221 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.46998 * 89.99982 * 8 6 4 10 10 H 1.48503 * 109.46987 * 209.99965 * 8 6 4 11 11 H 1.48499 * 109.46815 * 330.00121 * 8 6 4 12 12 C 1.46897 * 110.99814 * 236.04544 * 2 1 3 13 13 C 1.50694 * 109.47330 * 293.95439 * 12 2 1 14 14 C 1.38233 * 120.00154 * 269.72682 * 13 12 2 15 15 C 1.38238 * 120.00052 * 179.74264 * 14 13 12 16 16 C 1.38236 * 119.99929 * 0.54924 * 15 14 13 17 17 S 1.76196 * 119.99848 * 179.72248 * 16 15 14 18 18 C 1.81402 * 103.00110 * 269.98013 * 17 16 15 19 19 O 1.42104 * 103.00345 * 23.83599 * 17 16 15 20 20 C 1.38233 * 119.99890 * 359.70917 * 16 15 14 21 21 C 1.38231 * 120.00145 * 0.02562 * 20 16 15 22 22 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 23 23 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 24 24 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 25 25 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 26 26 H 1.09002 * 109.46955 * 306.04307 * 3 2 1 27 27 H 0.97002 * 120.00020 * 179.97438 * 7 6 4 28 28 H 1.09009 * 109.47296 * 53.95365 * 12 2 1 29 29 H 1.09002 * 109.47055 * 173.95064 * 12 2 1 30 30 H 1.08007 * 119.99755 * 359.97438 * 14 13 12 31 31 H 1.08003 * 119.99742 * 180.27410 * 15 14 13 32 32 H 1.09001 * 109.46899 * 60.00280 * 18 17 16 33 33 H 1.09004 * 109.47003 * 180.02562 * 18 17 16 34 34 H 1.08999 * 109.47273 * 300.00169 * 18 17 16 35 35 H 1.08002 * 119.99743 * 179.97438 * 20 16 15 36 36 H 1.07997 * 120.00104 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0746 1.5113 2.0488 6 6 2.0277 3.3492 1.5289 7 7 2.7129 4.0016 0.6154 8 14 1.5839 4.1865 3.1386 9 1 2.6608 3.9494 4.1333 10 1 1.4322 5.6463 2.9119 11 1 0.3060 3.6295 3.6504 12 6 1.9954 -0.7660 -1.1376 13 6 1.6369 -2.2204 -0.9729 14 6 2.4965 -3.0729 -0.3056 15 6 2.1651 -4.4059 -0.1499 16 6 0.9795 -4.8888 -0.6713 17 16 0.5606 -6.5894 -0.4792 18 6 1.2839 -7.3571 -1.9551 19 8 1.3052 -6.9745 0.6682 20 6 0.1224 -4.0375 -1.3433 21 6 0.4512 -2.7033 -1.4942 22 1 -0.3634 -1.0251 0.0708 23 1 -0.3633 0.5740 0.8525 24 1 -0.3633 0.4513 -0.9233 25 1 3.0798 1.3444 -0.1083 26 1 1.5612 1.9274 -0.8310 27 1 2.9875 4.9177 0.7773 28 1 1.5611 -0.3872 -2.0629 29 1 3.0797 -0.6611 -1.1757 30 1 3.4252 -2.6966 0.0974 31 1 2.8347 -5.0709 0.3753 32 1 2.3608 -7.1891 -1.9612 33 1 1.0830 -8.4284 -1.9428 34 1 0.8421 -6.9152 -2.8481 35 1 -0.8037 -4.4149 -1.7510 36 1 -0.2182 -2.0383 -2.0195 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000505312619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:59 Heat of formation + Delta-G solvation = -34.937125 kcal Electronic energy + Delta-G solvation = -17542.231482 eV Core-core repulsion = 14730.932591 eV Total energy + Delta-G solvation = -2811.298891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.43050 -38.01267 -36.83614 -34.82368 -32.69861 -31.92218 -29.63732 -29.19361 -28.15838 -25.75526 -23.66944 -23.02034 -21.71550 -19.01362 -18.57918 -17.52686 -16.90355 -16.64318 -16.27952 -16.04062 -15.71423 -15.49494 -15.19292 -14.65187 -14.46486 -14.27177 -13.91134 -13.65947 -13.48726 -13.30741 -12.99126 -12.85881 -12.75784 -12.63984 -12.48997 -12.25987 -11.98850 -11.85612 -11.39122 -11.18441 -10.65337 -10.04934 -9.87019 -9.31601 -9.04677 -8.23831 -6.34216 -0.04582 0.45216 1.02712 1.39192 1.40912 1.52028 1.83837 2.37711 2.64535 3.04246 3.08753 3.46940 3.77160 3.90489 4.09492 4.25990 4.36802 4.45994 4.50444 4.54869 4.62973 4.69248 4.74458 4.89377 5.04542 5.10029 5.13058 5.21361 5.23588 5.30169 5.34163 5.60603 5.66374 5.99195 6.02610 6.27832 6.55853 6.81476 7.35557 8.87200 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.041067 B = 0.003522 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.649130 B = 7947.224158 C = 8148.918887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.547 5.547 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.263 1.263 12 C 0.086 3.914 13 C -0.042 4.042 14 C -0.136 4.136 15 C -0.077 4.077 16 C -0.473 4.473 17 S 1.406 4.594 18 C -0.496 4.496 19 O -0.931 6.931 20 C -0.028 4.028 21 C -0.135 4.135 22 H 0.079 0.921 23 H 0.054 0.946 24 H 0.020 0.980 25 H 0.001 0.999 26 H -0.031 1.031 27 H 0.265 0.735 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.057 0.943 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.195 0.805 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.466 -21.256 -9.139 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.272 5.272 3 C 0.082 3.918 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.794 3.206 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.187 1.187 12 C -0.041 4.041 13 C -0.043 4.043 14 C -0.156 4.156 15 C -0.096 4.096 16 C -0.569 4.569 17 S 1.603 4.397 18 C -0.654 4.654 19 O -0.927 6.927 20 C -0.047 4.047 21 C -0.155 4.155 22 H 0.097 0.903 23 H 0.073 0.927 24 H 0.038 0.962 25 H 0.019 0.981 26 H -0.014 1.014 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.161 0.839 35 H 0.212 0.788 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.703 -21.734 -7.998 25.512 hybrid contribution 2.780 1.931 -0.017 3.385 sum -7.923 -19.803 -8.015 22.785 Atomic orbital electron populations 1.22269 0.87111 1.01409 1.00041 1.62028 1.08809 1.15206 1.41128 1.19402 0.93575 0.83536 0.95309 1.21451 1.35051 0.97534 1.02330 0.92058 1.25916 0.94941 0.97995 1.00744 1.70081 1.39252 1.11971 1.36144 0.85372 0.78964 0.77364 0.78861 1.20117 1.20464 1.18732 1.21104 0.99890 0.90542 0.92605 1.20024 0.95119 0.93951 0.95205 1.21106 1.00454 0.93917 1.00154 1.21037 0.96680 0.95242 0.96675 1.27940 1.00694 1.19781 1.08440 1.68453 1.12388 0.78057 0.80752 1.27759 1.08463 1.11225 1.17999 1.92981 1.75382 1.79932 1.44413 1.21378 0.98924 0.91395 0.92973 1.21519 0.95760 0.97353 1.00832 0.90270 0.92698 0.96174 0.98085 1.01374 0.92592 0.93675 0.91799 0.87383 0.87637 0.92325 0.85938 0.83880 0.78766 0.83741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.52 8.96 127.69 1.14 2.67 16 2 N -0.55 -24.35 4.74 -931.63 -4.42 -28.77 16 3 C 0.21 11.31 4.72 85.55 0.40 11.72 16 4 C -0.53 -30.41 8.46 25.60 0.22 -30.19 16 5 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 6 C 0.00 0.12 5.46 84.65 0.46 0.58 16 7 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 8 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 12 C 0.09 3.17 5.12 85.56 0.44 3.61 16 13 C -0.04 -1.31 4.88 -19.87 -0.10 -1.40 16 14 C -0.14 -4.44 9.70 22.27 0.22 -4.22 16 15 C -0.08 -2.28 9.44 22.27 0.21 -2.07 16 16 C -0.47 -9.81 5.61 22.27 0.12 -9.69 16 17 S 1.41 19.44 14.19 -56.49 -0.80 18.64 16 18 C -0.50 -5.03 10.70 113.37 1.21 -3.82 16 19 O -0.93 -27.79 16.90 -148.98 -2.52 -30.30 16 20 C -0.03 -0.45 9.75 22.27 0.22 -0.23 16 21 C -0.14 -3.06 7.97 22.27 0.18 -2.88 16 22 H 0.08 2.53 6.17 -2.39 -0.01 2.52 16 23 H 0.05 2.31 6.76 -2.38 -0.02 2.29 16 24 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.00 0.06 7.93 -2.39 -0.02 0.04 16 26 H -0.03 -1.82 8.12 -2.39 -0.02 -1.84 16 27 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.05 1.55 8.07 -2.38 -0.02 1.53 16 29 H 0.06 2.46 7.87 -2.39 -0.02 2.44 16 30 H 0.11 3.70 8.06 -2.91 -0.02 3.67 16 31 H 0.11 3.38 7.45 -2.91 -0.02 3.36 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.20 0.66 8.06 -2.91 -0.02 0.64 16 36 H 0.14 2.70 8.03 -2.91 -0.02 2.68 16 Total: -1.00 -82.64 315.27 0.35 -82.29 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 1.05 Total: 3.64 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 4.73 Total: -35.93 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -4.14 Total: -85.25 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -2.52 Total: -30.30 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 19.44 SS G_CDS: -0.80 Total: 18.64 kcal Total: -82.64 0.35 -82.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505312619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.353 kcal (2) G-P(sol) polarization free energy of solvation -82.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds