Wall clock time and date at job start Mon Mar 30 2020 01:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81402 * 102.99975 * 2 1 4 4 C 1.52997 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46593 * 305.00184 * 4 3 2 6 6 O 1.42897 * 109.46846 * 64.99726 * 4 3 2 7 7 C 1.53002 * 109.47271 * 185.00029 * 4 3 2 8 8 N 1.46496 * 109.46884 * 179.97438 * 7 4 3 9 9 C 1.39687 * 119.99892 * 179.97438 * 8 7 4 10 10 C 1.39332 * 119.95136 * 359.73496 * 9 8 7 11 11 C 1.38472 * 120.42607 * 179.71972 * 10 9 8 12 12 C 1.37697 * 120.32358 * 0.55013 * 11 10 9 13 13 C 1.40746 * 119.89158 * 359.72413 * 12 11 10 14 14 C 1.41407 * 120.20943 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00288 * 204.45294 * 14 13 12 16 16 C 1.39934 * 119.99928 * 24.44662 * 14 13 12 17 17 N 1.30830 * 119.99713 * 17.89512 * 16 14 13 18 18 Si 1.86803 * 119.99880 * 197.89608 * 16 14 13 19 19 H 1.48505 * 109.46724 * 90.00161 * 18 16 14 20 20 H 1.48493 * 109.46789 * 209.99895 * 18 16 14 21 21 H 1.48490 * 109.47134 * 330.00251 * 18 16 14 22 22 C 1.38275 * 119.95045 * 179.97438 * 9 8 7 23 23 H 1.09001 * 109.47168 * 59.99751 * 1 2 3 24 24 H 1.09002 * 109.47086 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47110 * 299.99955 * 1 2 3 26 26 H 1.09005 * 109.47085 * 300.00250 * 3 2 1 27 27 H 1.09000 * 109.46990 * 59.99697 * 3 2 1 28 28 H 0.96696 * 114.00122 * 60.00858 * 6 4 3 29 29 H 1.08992 * 109.47035 * 299.99825 * 7 4 3 30 30 H 1.09005 * 109.46723 * 59.99915 * 7 4 3 31 31 H 0.97001 * 120.00329 * 0.02562 * 8 7 4 32 32 H 1.08004 * 119.78833 * 359.97438 * 10 9 8 33 33 H 1.07997 * 119.84282 * 180.27390 * 11 10 9 34 34 H 1.07996 * 120.05499 * 179.74531 * 12 11 10 35 35 H 0.96999 * 119.99288 * 179.97438 * 17 16 14 36 36 H 1.08000 * 120.16366 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9401 -0.0006 5 1 4.1701 1.3952 0.8410 6 8 4.2792 1.4281 -1.2219 7 6 4.0871 3.4254 0.1251 8 7 5.5427 3.5904 0.1251 9 6 6.1009 4.8666 0.2300 10 6 5.2722 5.9824 0.3290 11 6 5.8151 7.2515 0.4392 12 6 7.1810 7.4256 0.4408 13 6 8.0307 6.3085 0.3358 14 6 9.4343 6.4796 0.3373 15 1 10.0694 5.7365 -0.1219 16 6 10.0005 7.6118 0.9336 17 7 9.3016 8.3242 1.7795 18 14 11.7543 8.1060 0.5218 19 1 11.7483 9.0280 -0.6423 20 1 12.3636 8.7890 1.6911 21 1 12.5450 6.8939 0.1892 22 6 7.4750 5.0212 0.2304 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8031 2.2372 -0.8900 27 1 1.8031 2.2371 0.8900 28 1 3.9419 1.8674 -2.0146 29 1 3.6593 3.9702 -0.7164 30 1 3.6775 3.8158 1.0567 31 1 6.1190 2.8136 0.0515 32 1 4.1996 5.8562 0.3239 33 1 5.1640 8.1093 0.5199 34 1 7.5996 8.4178 0.5229 35 1 9.6943 9.1088 2.1932 36 1 8.1183 4.1574 0.1502 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514857131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:54 Heat of formation + Delta-G solvation = -37.667841 kcal Electronic energy + Delta-G solvation = -17252.349911 eV Core-core repulsion = 14440.932608 eV Total energy + Delta-G solvation = -2811.417303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.47010 -37.30737 -34.65407 -33.01649 -31.39540 -29.74331 -29.26637 -28.11524 -25.25531 -24.99936 -22.10675 -20.61673 -20.11571 -17.37233 -17.08355 -16.32317 -15.84739 -15.48824 -15.26820 -14.60335 -14.27280 -14.10482 -13.95942 -13.84022 -13.28556 -12.89958 -12.60794 -12.47795 -12.26770 -12.05989 -11.55185 -11.35412 -11.11447 -11.05198 -10.57424 -10.41244 -10.24617 -10.13975 -9.76234 -9.30489 -9.20962 -8.74256 -7.91301 -7.38076 -6.70075 -6.21226 -4.29861 1.35084 2.30937 2.86655 3.11153 3.15074 3.23423 3.37702 3.93805 4.00346 4.28769 4.66011 4.72773 4.75247 4.80201 4.82400 4.92805 5.21212 5.31570 5.36724 5.77450 5.83309 5.99332 6.31735 6.52565 7.03925 7.05286 7.13297 7.35359 7.40285 7.50544 7.78787 7.92267 8.15239 8.25370 8.51749 8.64687 8.79913 9.01414 9.12845 10.26125 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.052501 B = 0.003111 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.190732 B = 8997.239267 C = 9358.062091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.239 6.239 3 C -0.120 4.120 4 C 0.115 3.885 5 H 0.111 0.889 6 O -0.546 6.546 7 C 0.113 3.887 8 N -0.756 5.756 9 C 0.224 3.776 10 C -0.304 4.304 11 C -0.075 4.075 12 C -0.199 4.199 13 C 0.141 3.859 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.077 3.923 17 N -0.792 5.792 18 Si 0.907 3.093 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.263 1.263 22 C -0.288 4.288 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.375 0.625 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.393 0.607 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.279 0.721 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.597 -9.659 -2.829 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S -0.013 6.013 3 C -0.269 4.269 4 C 0.054 3.946 5 H 0.128 0.872 6 O -0.351 6.351 7 C -0.015 4.015 8 N -0.391 5.391 9 C 0.126 3.874 10 C -0.327 4.327 11 C -0.095 4.095 12 C -0.220 4.220 13 C 0.138 3.862 14 C -0.494 4.494 15 H 0.094 0.906 16 C -0.140 4.140 17 N -0.417 5.417 18 Si 0.731 3.269 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.311 4.311 23 H 0.094 0.906 24 H 0.119 0.881 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.223 0.777 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.227 0.773 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.795 -10.678 -2.242 16.815 hybrid contribution -0.373 1.494 -0.371 1.584 sum -13.168 -9.184 -2.613 16.265 Atomic orbital electron populations 1.23421 0.95106 1.06453 1.04816 1.87179 1.06025 1.10137 1.97997 1.24183 1.01197 0.95646 1.05913 1.21852 0.89184 0.94525 0.89071 0.87167 1.86634 1.70072 1.63200 1.15169 1.21642 0.84647 0.93932 1.01271 1.44246 1.03433 1.06231 1.85208 1.17461 0.92116 0.83339 0.94495 1.19826 0.96035 0.92260 1.24599 1.20428 0.95206 0.94744 0.99075 1.21184 0.91614 0.99188 1.09972 1.17346 0.93119 0.89950 0.85772 1.19567 0.92184 1.04902 1.32714 0.90579 1.25902 1.00009 0.95365 0.92771 1.69866 1.38241 1.14291 1.19335 0.86344 0.82115 0.79555 0.78854 1.19324 1.20411 1.18671 1.20406 0.91248 0.96845 1.22647 0.90580 0.88111 0.90599 0.89557 0.88872 0.77712 0.92905 0.92314 0.77264 0.89916 0.89706 0.86761 0.91044 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 10.76 101.05 1.09 0.21 16 2 S -0.24 -2.43 22.16 -107.50 -2.38 -4.81 16 3 C -0.12 -1.10 5.60 37.16 0.21 -0.89 16 4 C 0.11 1.29 3.05 -26.73 -0.08 1.21 16 5 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 6 O -0.55 -6.62 12.84 -35.23 -0.45 -7.07 16 7 C 0.11 1.55 4.57 -4.04 -0.02 1.53 16 8 N -0.76 -13.52 5.62 -58.69 -0.33 -13.85 16 9 C 0.22 5.07 6.64 -83.86 -0.56 4.51 16 10 C -0.30 -6.90 9.32 -39.09 -0.36 -7.26 16 11 C -0.08 -1.82 10.02 -39.69 -0.40 -2.22 16 12 C -0.20 -5.33 8.70 -38.83 -0.34 -5.67 16 13 C 0.14 3.88 5.57 -106.85 -0.60 3.28 16 14 C -0.46 -12.63 9.05 -37.74 -0.34 -12.98 16 15 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 16 C 0.08 1.98 5.14 -17.34 -0.09 1.89 16 17 N -0.79 -20.92 10.96 55.55 0.61 -20.32 16 18 Si 0.91 19.03 29.60 -169.99 -5.03 14.00 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 22 C -0.29 -7.26 9.63 -38.67 -0.37 -7.63 16 23 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 24 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 26 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 28 H 0.38 3.48 9.04 45.56 0.41 3.89 16 29 H 0.05 0.71 7.93 -51.93 -0.41 0.30 16 30 H 0.06 0.82 7.95 -51.93 -0.41 0.41 16 31 H 0.39 6.79 8.35 -40.82 -0.34 6.45 16 32 H 0.08 1.66 6.70 -52.48 -0.35 1.31 16 33 H 0.08 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.11 3.15 6.15 -52.49 -0.32 2.83 16 35 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 36 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 317.84 15.07 4.79 4.79 Total: -1.00 -29.72 317.84 -9.02 -38.74 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -4.36 Total: 12.53 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -1.86 Total: -24.02 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.28 Total: -34.16 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.45 Total: -7.07 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -2.38 Total: -4.81 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.72 -9.02 -38.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514857131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.073 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds