Wall clock time and date at job start Mon Mar 30 2020 01:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81402 * 102.99975 * 2 1 4 4 C 1.52997 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46593 * 305.00184 * 4 3 2 6 6 O 1.42897 * 109.46846 * 64.99726 * 4 3 2 7 7 C 1.53002 * 109.47271 * 185.00029 * 4 3 2 8 8 N 1.46496 * 109.46884 * 179.97438 * 7 4 3 9 9 C 1.39687 * 119.99892 * 179.97438 * 8 7 4 10 10 C 1.39332 * 119.95136 * 359.73496 * 9 8 7 11 11 C 1.38472 * 120.42607 * 179.71972 * 10 9 8 12 12 C 1.37697 * 120.32358 * 0.55013 * 11 10 9 13 13 C 1.40746 * 119.89158 * 359.72413 * 12 11 10 14 14 C 1.41407 * 120.20943 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00288 * 204.45294 * 14 13 12 16 16 C 1.39934 * 119.99928 * 24.44662 * 14 13 12 17 17 N 1.30830 * 119.99713 * 17.89512 * 16 14 13 18 18 Si 1.86803 * 119.99880 * 197.89608 * 16 14 13 19 19 H 1.48505 * 109.46724 * 90.00161 * 18 16 14 20 20 H 1.48493 * 109.46789 * 209.99895 * 18 16 14 21 21 H 1.48490 * 109.47134 * 330.00251 * 18 16 14 22 22 C 1.38275 * 119.95045 * 179.97438 * 9 8 7 23 23 H 1.09001 * 109.47168 * 59.99751 * 1 2 3 24 24 H 1.09002 * 109.47086 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47110 * 299.99955 * 1 2 3 26 26 H 1.09005 * 109.47085 * 300.00250 * 3 2 1 27 27 H 1.09000 * 109.46990 * 59.99697 * 3 2 1 28 28 H 0.96696 * 114.00122 * 60.00858 * 6 4 3 29 29 H 1.08992 * 109.47035 * 299.99825 * 7 4 3 30 30 H 1.09005 * 109.46723 * 59.99915 * 7 4 3 31 31 H 0.97001 * 120.00329 * 0.02562 * 8 7 4 32 32 H 1.08004 * 119.78833 * 359.97438 * 10 9 8 33 33 H 1.07997 * 119.84282 * 180.27390 * 11 10 9 34 34 H 1.07996 * 120.05499 * 179.74531 * 12 11 10 35 35 H 0.96999 * 119.99288 * 179.97438 * 17 16 14 36 36 H 1.08000 * 120.16366 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9401 -0.0006 5 1 4.1701 1.3952 0.8410 6 8 4.2792 1.4281 -1.2219 7 6 4.0871 3.4254 0.1251 8 7 5.5427 3.5904 0.1251 9 6 6.1009 4.8666 0.2300 10 6 5.2722 5.9824 0.3290 11 6 5.8151 7.2515 0.4392 12 6 7.1810 7.4256 0.4408 13 6 8.0307 6.3085 0.3358 14 6 9.4343 6.4796 0.3373 15 1 10.0694 5.7365 -0.1219 16 6 10.0005 7.6118 0.9336 17 7 9.3016 8.3242 1.7795 18 14 11.7543 8.1060 0.5218 19 1 11.7483 9.0280 -0.6423 20 1 12.3636 8.7890 1.6911 21 1 12.5450 6.8939 0.1892 22 6 7.4750 5.0212 0.2304 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8031 2.2372 -0.8900 27 1 1.8031 2.2371 0.8900 28 1 3.9419 1.8674 -2.0146 29 1 3.6593 3.9702 -0.7164 30 1 3.6775 3.8158 1.0567 31 1 6.1190 2.8136 0.0515 32 1 4.1996 5.8562 0.3239 33 1 5.1640 8.1093 0.5199 34 1 7.5996 8.4178 0.5229 35 1 9.6943 9.1088 2.1932 36 1 8.1183 4.1574 0.1502 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514857131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:53 Heat of formation + Delta-G solvation = -57.206204 kcal Electronic energy + Delta-G solvation = -17253.197158 eV Core-core repulsion = 14440.932608 eV Total energy + Delta-G solvation = -2812.264550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.87653 -38.73240 -36.29327 -34.73316 -32.44126 -31.66403 -29.96637 -29.49201 -27.14153 -26.35411 -23.29663 -22.35333 -21.87458 -19.17306 -18.12566 -17.38407 -17.20874 -16.93622 -16.41692 -16.32202 -15.78082 -15.23543 -14.83006 -14.71470 -14.37591 -14.34188 -14.23161 -13.91744 -13.43752 -13.21154 -13.06444 -12.87933 -12.76292 -12.44892 -12.26544 -12.03738 -11.67779 -11.21410 -11.13054 -11.03746 -10.90019 -10.47973 -9.33906 -8.67078 -8.61104 -7.94372 -6.32680 0.66613 1.04786 1.34474 1.39233 1.52298 1.59838 1.67087 2.22946 2.70342 2.80361 3.43894 3.67156 3.85509 3.93243 3.95624 4.33427 4.35379 4.36175 4.49275 4.55913 4.65915 4.74579 4.89266 4.99312 5.13936 5.16965 5.23547 5.41573 5.58446 5.93510 6.02842 6.20154 6.31104 6.62353 6.73177 6.89506 7.02291 7.04161 7.23543 8.37297 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.052501 B = 0.003111 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.190732 B = 8997.239267 C = 9358.062091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.299 6.299 3 C -0.105 4.105 4 C 0.126 3.874 5 H 0.098 0.902 6 O -0.562 6.562 7 C 0.111 3.889 8 N -0.749 5.749 9 C 0.234 3.766 10 C -0.302 4.302 11 C -0.075 4.075 12 C -0.233 4.233 13 C 0.112 3.888 14 C -0.504 4.504 15 H 0.070 0.930 16 C 0.036 3.964 17 N -0.823 5.823 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.260 1.260 22 C -0.314 4.314 23 H 0.087 0.913 24 H 0.109 0.891 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.388 0.612 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.396 0.604 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.287 0.713 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.258 -9.971 -3.160 18.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.073 6.073 3 C -0.254 4.254 4 C 0.066 3.934 5 H 0.116 0.884 6 O -0.369 6.369 7 C -0.016 4.016 8 N -0.382 5.382 9 C 0.132 3.868 10 C -0.325 4.325 11 C -0.094 4.094 12 C -0.254 4.254 13 C 0.109 3.891 14 C -0.533 4.533 15 H 0.088 0.912 16 C -0.179 4.179 17 N -0.449 5.449 18 Si 0.803 3.197 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.184 1.184 22 C -0.338 4.338 23 H 0.106 0.894 24 H 0.127 0.873 25 H 0.104 0.896 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.237 0.763 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.230 0.770 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.502 -11.026 -2.581 18.399 hybrid contribution -0.044 1.476 -0.272 1.502 sum -14.546 -9.550 -2.853 17.633 Atomic orbital electron populations 1.23455 0.91544 1.07413 1.05888 1.87397 1.10046 1.11715 1.98176 1.24038 0.99250 0.94718 1.07368 1.21647 0.90765 0.92443 0.88571 0.88373 1.86616 1.70655 1.63639 1.15943 1.21876 0.81753 0.95973 1.01993 1.44339 1.05555 1.04535 1.83767 1.17525 0.91320 0.85393 0.92520 1.20163 0.97707 0.91475 1.23200 1.20746 0.94497 0.96496 0.97635 1.21122 0.92965 0.98274 1.13050 1.17706 0.93769 0.91100 0.86509 1.19806 0.92626 1.06371 1.34514 0.91152 1.26765 1.04536 0.94676 0.91950 1.69918 1.40314 1.14793 1.19883 0.85209 0.76347 0.79169 0.78964 1.18606 1.19095 1.18401 1.20519 0.92827 0.96145 1.24286 0.89430 0.87252 0.89552 0.87841 0.87624 0.76298 0.91644 0.91715 0.77004 0.86562 0.87224 0.88579 0.90245 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.76 113.37 1.22 -0.02 16 2 S -0.30 -5.53 22.16 -56.49 -1.25 -6.78 16 3 C -0.10 -1.61 5.60 71.98 0.40 -1.21 16 4 C 0.13 2.58 3.05 30.59 0.09 2.67 16 5 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 6 O -0.56 -12.60 12.84 -148.98 -1.91 -14.52 16 7 C 0.11 2.71 4.57 86.38 0.39 3.11 16 8 N -0.75 -25.58 5.62 -339.59 -1.91 -27.49 16 9 C 0.23 10.37 6.64 38.16 0.25 10.62 16 10 C -0.30 -13.14 9.32 22.59 0.21 -12.93 16 11 C -0.07 -3.57 10.02 22.20 0.22 -3.34 16 12 C -0.23 -12.84 8.70 22.76 0.20 -12.65 16 13 C 0.11 6.37 5.57 -21.31 -0.12 6.26 16 14 C -0.50 -28.55 9.05 23.46 0.21 -28.34 16 15 H 0.07 3.89 7.91 -2.91 -0.02 3.86 16 16 C 0.04 1.87 5.14 85.25 0.44 2.31 16 17 N -0.82 -44.65 10.96 21.82 0.24 -44.42 16 18 Si 0.98 39.61 29.60 68.60 2.03 41.64 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 22 C -0.31 -16.20 9.63 22.86 0.22 -15.98 16 23 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 26 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.39 6.33 9.04 -74.06 -0.67 5.66 16 29 H 0.07 1.50 7.93 -2.39 -0.02 1.48 16 30 H 0.06 1.58 7.95 -2.38 -0.02 1.56 16 31 H 0.40 13.29 8.35 -92.71 -0.77 12.51 16 32 H 0.12 4.23 6.70 -2.91 -0.02 4.21 16 33 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 34 H 0.10 5.53 6.15 -2.91 -0.02 5.51 16 35 H 0.29 13.99 8.30 -92.71 -0.77 13.23 16 36 H 0.09 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -65.88 317.84 0.59 -65.29 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -0.35 Total: 35.78 kcal Atomic # 6 Polarization: -53.25 SS G_CDS: 3.75 Total: -49.50 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.67 Total: -71.91 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.91 Total: -14.52 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Atomic # 16 Polarization: -5.53 SS G_CDS: -1.25 Total: -6.78 kcal Total: -65.88 0.59 -65.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514857131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.082 kcal (2) G-P(sol) polarization free energy of solvation -65.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds