Wall clock time and date at job start Mon Mar 30 2020 00:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46649 * 2 1 4 4 C 1.53000 * 109.46972 * 119.99319 * 2 1 3 5 5 C 1.50702 * 109.47088 * 185.00359 * 4 2 1 6 6 C 1.38421 * 122.53859 * 269.74103 * 5 4 2 7 7 C 1.33387 * 114.92165 * 179.76362 * 6 5 4 8 8 S 1.75881 * 109.59168 * 0.47015 * 7 6 5 9 9 C 1.33390 * 122.53780 * 90.02571 * 5 4 2 10 10 N 1.46897 * 109.47507 * 239.99721 * 2 1 3 11 11 C 1.47484 * 110.99574 * 325.85962 * 10 2 1 12 12 C 1.53519 * 87.92950 * 138.70637 * 11 10 2 13 13 O 1.42898 * 114.17360 * 87.62261 * 12 11 10 14 14 C 1.50699 * 114.16482 * 220.32968 * 12 11 10 15 15 H 1.08001 * 120.00321 * 93.84551 * 14 12 11 16 16 C 1.37883 * 119.99655 * 273.83343 * 14 12 11 17 17 N 1.31514 * 120.00089 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99618 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46875 * 90.00529 * 18 16 14 20 20 H 1.48500 * 109.47113 * 210.00147 * 18 16 14 21 21 H 1.48501 * 109.47471 * 330.00266 * 18 16 14 22 22 C 1.47474 * 111.00066 * 61.82846 * 10 2 1 23 23 H 1.09006 * 109.46883 * 189.90790 * 1 2 3 24 24 H 1.08996 * 109.47746 * 309.91369 * 1 2 3 25 25 H 1.08999 * 109.47035 * 69.91550 * 1 2 3 26 26 H 1.09004 * 109.47356 * 305.00193 * 4 2 1 27 27 H 1.09005 * 109.47148 * 65.00161 * 4 2 1 28 28 H 1.07997 * 122.54177 * 359.97438 * 6 5 4 29 29 H 1.08006 * 125.20772 * 180.20991 * 7 6 5 30 30 H 1.07999 * 125.20239 * 0.02562 * 9 5 4 31 31 H 1.09002 * 113.47709 * 253.46374 * 11 10 2 32 32 H 1.08996 * 113.48133 * 23.93795 * 11 10 2 33 33 H 0.96693 * 114.00176 * 86.15597 * 13 12 11 34 34 H 0.96995 * 119.99753 * 179.97438 * 17 16 14 35 35 H 1.09000 * 113.47912 * 336.06599 * 22 10 2 36 36 H 1.08996 * 113.47851 * 106.52721 * 22 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6147 1.3129 6 6 4.3799 -1.5547 0.7383 7 6 5.6829 -1.3084 0.8816 8 16 5.9052 0.1764 1.7977 9 6 4.1644 0.3896 1.9319 10 7 2.0198 -0.6925 -1.1993 11 6 1.1215 -1.8008 -1.5734 12 6 1.3007 -1.3778 -3.0383 13 8 2.4274 -1.9725 -3.6855 14 6 0.0376 -1.4418 -3.8577 15 1 -0.5781 -0.5617 -3.9706 16 6 -0.3319 -2.6239 -4.4637 17 7 0.4177 -3.6957 -4.3261 18 14 -1.8972 -2.7030 -5.4801 19 1 -1.5879 -2.3644 -6.8925 20 1 -2.4627 -4.0745 -5.4123 21 1 -2.8854 -1.7331 -4.9435 22 6 1.5832 0.0010 -2.4254 23 1 -0.3633 -1.0124 0.1768 24 1 -0.3634 0.6593 0.7882 25 1 -0.3633 0.3529 -0.9652 26 1 1.6053 -0.2615 2.1370 27 1 1.7516 -1.7714 1.2058 28 1 4.0069 -2.4202 0.2108 29 1 6.4798 -1.9283 0.4977 30 1 3.6745 1.2081 2.4382 31 1 1.5323 -2.7861 -1.3527 32 1 0.1025 -1.6766 -1.2070 33 1 2.2467 -2.8409 -4.0705 34 1 0.1576 -4.5274 -4.7521 35 1 0.6873 0.6062 -2.2864 36 1 2.3850 0.5430 -2.9267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530389011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:26 Heat of formation + Delta-G solvation = 27.725263 kcal Electronic energy + Delta-G solvation = -18662.365806 eV Core-core repulsion = 15853.784160 eV Total energy + Delta-G solvation = -2808.581646 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.81325 -37.82679 -34.85832 -32.33338 -31.93440 -29.47645 -27.09993 -26.73030 -24.96660 -24.14037 -22.68496 -19.98899 -18.43978 -18.07137 -17.34647 -17.29661 -15.47467 -15.15550 -14.89352 -14.47307 -13.89188 -13.70611 -13.20880 -12.82048 -12.73366 -12.62300 -12.27250 -11.97694 -11.63466 -11.41891 -11.31682 -11.19633 -11.05254 -10.76691 -10.57079 -10.46724 -10.38981 -10.13559 -9.91928 -9.18667 -8.61909 -8.49971 -8.05767 -8.05099 -7.75015 -6.25808 -4.35247 1.30623 1.94435 2.24600 3.09617 3.19317 3.26906 3.29224 4.25258 4.86180 4.98731 5.10734 5.25046 5.37349 5.52208 5.61588 5.73715 5.83116 5.89343 5.96440 5.99525 6.10104 6.20035 6.21448 6.39410 6.45946 6.56713 6.64901 6.73943 6.79617 6.89448 7.12075 7.27271 7.40629 7.78503 7.99897 8.11506 8.66877 9.34885 9.72257 10.79950 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.034876 B = 0.004918 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.642759 B = 5691.473426 C = 6109.993497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.070 0.930 4 C -0.048 4.048 5 C -0.068 4.068 6 C -0.097 4.097 7 C -0.215 4.215 8 S 0.052 5.948 9 C -0.224 4.224 10 N -0.457 5.457 11 C -0.033 4.033 12 C 0.248 3.752 13 O -0.571 6.571 14 C -0.533 4.533 15 H 0.065 0.935 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.001 4.001 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.159 0.841 30 H 0.156 0.844 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.389 0.611 34 H 0.271 0.729 35 H 0.066 0.934 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.189 4.870 11.266 12.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.062 4.062 3 H 0.089 0.911 4 C -0.088 4.088 5 C -0.080 4.080 6 C -0.127 4.127 7 C -0.350 4.350 8 S 0.315 5.685 9 C -0.359 4.359 10 N -0.180 5.180 11 C -0.163 4.163 12 C 0.207 3.793 13 O -0.383 6.383 14 C -0.571 4.571 15 H 0.083 0.917 16 C -0.131 4.131 17 N -0.539 5.539 18 Si 0.729 3.271 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.130 4.130 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.160 0.840 29 H 0.177 0.823 30 H 0.174 0.826 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.244 0.756 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.504 5.926 12.076 14.942 hybrid contribution -3.179 -1.163 -1.251 3.608 sum 3.326 4.763 10.826 12.286 Atomic orbital electron populations 1.22506 0.97268 1.02205 1.02367 1.22085 0.92761 0.98242 0.93070 0.91136 1.20325 0.89766 1.01614 0.97125 1.18838 0.96995 0.94420 0.97752 1.20132 0.91812 1.01019 0.99774 1.25471 1.00440 1.01180 1.07891 1.83971 1.06239 1.23292 1.55036 1.25272 0.95694 1.04622 1.10333 1.69141 1.42867 1.06497 0.99446 1.24914 0.95305 0.94992 1.01045 1.19332 0.84811 0.87687 0.87499 1.86034 1.36741 1.39927 1.75610 1.21593 1.07038 0.96699 1.31780 0.91726 1.25047 0.97340 0.95175 0.95492 1.69297 1.38781 1.01376 1.44466 0.86438 0.82696 0.77443 0.80519 1.20349 1.20988 1.19756 1.24121 0.98464 0.98782 0.91652 0.91607 0.93131 0.91214 0.91443 0.90883 0.84011 0.82322 0.82603 0.91874 0.90818 0.75585 0.91897 0.91556 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.84 7.74 37.16 0.29 -2.56 16 2 C 0.05 0.79 2.41 -67.71 -0.16 0.63 16 3 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.05 -0.70 5.06 -27.88 -0.14 -0.84 16 5 C -0.07 -1.02 4.83 -106.25 -0.51 -1.53 16 6 C -0.10 -1.53 9.74 -41.21 -0.40 -1.94 16 7 C -0.22 -3.04 11.23 29.04 0.33 -2.72 16 8 S 0.05 0.67 23.34 -107.50 -2.51 -1.84 16 9 C -0.22 -3.04 10.98 29.04 0.32 -2.72 16 10 N -0.46 -9.22 5.86 -236.59 -1.39 -10.60 16 11 C -0.03 -0.75 6.65 -7.54 -0.05 -0.80 16 12 C 0.25 6.21 1.57 -91.24 -0.14 6.07 16 13 O -0.57 -15.52 13.54 -35.23 -0.48 -15.99 16 14 C -0.53 -14.02 8.68 -34.44 -0.30 -14.32 16 15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.07 1.86 5.40 -17.82 -0.10 1.76 16 17 N -0.90 -23.92 11.02 55.43 0.61 -23.31 16 18 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.00 -0.03 6.95 -7.55 -0.05 -0.08 16 23 H 0.07 1.04 6.48 -51.93 -0.34 0.70 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.17 5.82 -51.93 -0.30 0.87 16 26 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 27 H 0.07 1.11 8.01 -51.93 -0.42 0.69 16 28 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 29 H 0.16 1.93 8.06 -52.48 -0.42 1.50 16 30 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.07 1.59 4.81 -51.93 -0.25 1.34 16 33 H 0.39 10.73 6.34 45.56 0.29 11.02 16 34 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.07 1.35 5.86 -51.93 -0.30 1.05 16 36 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 304.17 15.07 4.58 4.58 Total: -1.00 -27.30 304.17 -9.37 -36.67 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -4.25 Total: 14.35 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -0.93 Total: -19.04 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: -0.78 Total: -33.91 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.48 Total: -15.99 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.51 Total: -1.84 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.30 -9.37 -36.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530389011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.395 kcal (2) G-P(sol) polarization free energy of solvation -27.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds