Wall clock time and date at job start Mon Mar 30 2020 00:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46649 * 2 1 4 4 C 1.53000 * 109.46972 * 119.99319 * 2 1 3 5 5 C 1.50702 * 109.47088 * 185.00359 * 4 2 1 6 6 C 1.38421 * 122.53859 * 269.74103 * 5 4 2 7 7 C 1.33387 * 114.92165 * 179.76362 * 6 5 4 8 8 S 1.75881 * 109.59168 * 0.47015 * 7 6 5 9 9 C 1.33390 * 122.53780 * 90.02571 * 5 4 2 10 10 N 1.46897 * 109.47507 * 239.99721 * 2 1 3 11 11 C 1.47484 * 110.99574 * 325.85962 * 10 2 1 12 12 C 1.53519 * 87.92950 * 138.70637 * 11 10 2 13 13 O 1.42898 * 114.17360 * 87.62261 * 12 11 10 14 14 C 1.50699 * 114.16482 * 220.32968 * 12 11 10 15 15 H 1.08001 * 120.00321 * 93.84551 * 14 12 11 16 16 C 1.37883 * 119.99655 * 273.83343 * 14 12 11 17 17 N 1.31514 * 120.00089 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99618 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46875 * 90.00529 * 18 16 14 20 20 H 1.48500 * 109.47113 * 210.00147 * 18 16 14 21 21 H 1.48501 * 109.47471 * 330.00266 * 18 16 14 22 22 C 1.47474 * 111.00066 * 61.82846 * 10 2 1 23 23 H 1.09006 * 109.46883 * 189.90790 * 1 2 3 24 24 H 1.08996 * 109.47746 * 309.91369 * 1 2 3 25 25 H 1.08999 * 109.47035 * 69.91550 * 1 2 3 26 26 H 1.09004 * 109.47356 * 305.00193 * 4 2 1 27 27 H 1.09005 * 109.47148 * 65.00161 * 4 2 1 28 28 H 1.07997 * 122.54177 * 359.97438 * 6 5 4 29 29 H 1.08006 * 125.20772 * 180.20991 * 7 6 5 30 30 H 1.07999 * 125.20239 * 0.02562 * 9 5 4 31 31 H 1.09002 * 113.47709 * 253.46374 * 11 10 2 32 32 H 1.08996 * 113.48133 * 23.93795 * 11 10 2 33 33 H 0.96693 * 114.00176 * 86.15597 * 13 12 11 34 34 H 0.96995 * 119.99753 * 179.97438 * 17 16 14 35 35 H 1.09000 * 113.47912 * 336.06599 * 22 10 2 36 36 H 1.08996 * 113.47851 * 106.52721 * 22 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6147 1.3129 6 6 4.3799 -1.5547 0.7383 7 6 5.6829 -1.3084 0.8816 8 16 5.9052 0.1764 1.7977 9 6 4.1644 0.3896 1.9319 10 7 2.0198 -0.6925 -1.1993 11 6 1.1215 -1.8008 -1.5734 12 6 1.3007 -1.3778 -3.0383 13 8 2.4274 -1.9725 -3.6855 14 6 0.0376 -1.4418 -3.8577 15 1 -0.5781 -0.5617 -3.9706 16 6 -0.3319 -2.6239 -4.4637 17 7 0.4177 -3.6957 -4.3261 18 14 -1.8972 -2.7030 -5.4801 19 1 -1.5879 -2.3644 -6.8925 20 1 -2.4627 -4.0745 -5.4123 21 1 -2.8854 -1.7331 -4.9435 22 6 1.5832 0.0010 -2.4254 23 1 -0.3633 -1.0124 0.1768 24 1 -0.3634 0.6593 0.7882 25 1 -0.3633 0.3529 -0.9652 26 1 1.6053 -0.2615 2.1370 27 1 1.7516 -1.7714 1.2058 28 1 4.0069 -2.4202 0.2108 29 1 6.4798 -1.9283 0.4977 30 1 3.6745 1.2081 2.4382 31 1 1.5323 -2.7861 -1.3527 32 1 0.1025 -1.6766 -1.2070 33 1 2.2467 -2.8409 -4.0705 34 1 0.1576 -4.5274 -4.7521 35 1 0.6873 0.6062 -2.2864 36 1 2.3850 0.5430 -2.9267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530389011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:25 Heat of formation + Delta-G solvation = 9.197897 kcal Electronic energy + Delta-G solvation = -18663.169213 eV Core-core repulsion = 15853.784160 eV Total energy + Delta-G solvation = -2809.385052 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.43496 -39.04048 -36.64573 -34.13290 -33.68782 -30.67181 -28.86969 -27.94683 -26.73415 -25.86352 -23.85973 -21.54949 -19.86624 -19.57899 -19.14105 -18.42398 -17.14174 -17.00158 -16.22563 -16.16889 -15.45435 -15.31161 -14.53709 -14.33823 -14.10954 -13.79604 -13.68218 -13.54157 -13.19681 -13.03398 -12.77003 -12.73847 -12.46912 -12.38494 -12.23486 -12.09427 -11.80952 -11.60721 -11.49747 -11.02528 -10.58741 -9.97640 -9.62035 -9.40142 -9.10264 -8.22779 -6.40153 0.21253 0.89399 1.16344 1.42396 1.44625 1.54151 1.93776 2.38137 2.98513 3.32288 3.88587 3.99845 4.14247 4.21493 4.27707 4.40482 4.41438 4.50364 4.58082 4.63511 4.74554 4.85622 4.86781 4.95819 5.06628 5.11021 5.25938 5.27615 5.30437 5.48231 5.61156 5.65713 5.78332 5.79828 6.01533 6.48746 6.65972 7.32901 7.60278 8.82069 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.034876 B = 0.004918 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.642759 B = 5691.473426 C = 6109.993497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.047 3.953 3 H 0.079 0.921 4 C -0.042 4.042 5 C -0.090 4.090 6 C -0.123 4.123 7 C -0.226 4.226 8 S 0.091 5.909 9 C -0.221 4.221 10 N -0.459 5.459 11 C -0.016 4.016 12 C 0.219 3.781 13 O -0.587 6.587 14 C -0.553 4.553 15 H 0.065 0.935 16 C 0.027 3.973 17 N -0.921 5.921 18 Si 0.966 3.034 19 H -0.277 1.277 20 H -0.281 1.281 21 H -0.266 1.266 22 C 0.007 3.993 23 H 0.058 0.942 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.119 0.881 29 H 0.172 0.828 30 H 0.182 0.818 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.382 0.618 34 H 0.273 0.727 35 H 0.082 0.918 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.580 6.393 12.600 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.062 4.062 3 H 0.097 0.903 4 C -0.082 4.082 5 C -0.102 4.102 6 C -0.153 4.153 7 C -0.360 4.360 8 S 0.354 5.646 9 C -0.356 4.356 10 N -0.181 5.181 11 C -0.146 4.146 12 C 0.178 3.822 13 O -0.398 6.398 14 C -0.591 4.591 15 H 0.083 0.917 16 C -0.172 4.172 17 N -0.562 5.562 18 Si 0.791 3.209 19 H -0.203 1.203 20 H -0.206 1.206 21 H -0.190 1.190 22 C -0.122 4.122 23 H 0.076 0.924 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.137 0.863 29 H 0.189 0.811 30 H 0.200 0.800 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.236 0.764 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.902 7.464 13.426 16.456 hybrid contribution -2.891 -1.600 -1.618 3.679 sum 3.011 5.865 11.808 13.524 Atomic orbital electron populations 1.22424 0.96188 1.02485 1.02645 1.22203 0.93655 0.98375 0.91994 0.90262 1.20284 0.89820 1.00833 0.97243 1.18881 0.97191 0.95086 0.99033 1.20132 0.92893 1.01215 1.01055 1.25748 1.00324 1.02232 1.07742 1.83839 1.05553 1.21568 1.53654 1.25625 0.96244 1.04505 1.09223 1.69057 1.42780 1.05798 1.00482 1.24633 0.95924 0.94624 0.99384 1.19734 0.84142 0.89857 0.88504 1.86015 1.38103 1.39644 1.76071 1.21851 1.07675 0.96982 1.32632 0.91713 1.25794 1.00234 0.94773 0.96418 1.69381 1.40068 1.01778 1.45016 0.85440 0.79184 0.77557 0.78750 1.20287 1.20589 1.18996 1.24028 0.98800 0.97288 0.92070 0.92354 0.89788 0.92838 0.88354 0.92271 0.86302 0.81068 0.80023 0.94195 0.90068 0.76376 0.91705 0.90007 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.11 7.74 71.98 0.56 -4.56 16 2 C 0.05 1.46 2.41 44.92 0.11 1.57 16 3 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 4 C -0.04 -1.14 5.06 29.85 0.15 -0.99 16 5 C -0.09 -2.57 4.83 -20.92 -0.10 -2.67 16 6 C -0.12 -3.88 9.74 21.22 0.21 -3.67 16 7 C -0.23 -6.22 11.23 66.72 0.75 -5.47 16 8 S 0.09 2.14 23.34 -56.49 -1.32 0.82 16 9 C -0.22 -5.37 10.98 66.72 0.73 -4.64 16 10 N -0.46 -18.46 5.86 -902.82 -5.29 -23.75 16 11 C -0.02 -0.74 6.65 83.57 0.56 -0.19 16 12 C 0.22 11.14 1.57 -11.19 -0.02 11.13 16 13 O -0.59 -32.97 13.54 -148.98 -2.02 -34.99 16 14 C -0.55 -29.36 8.68 25.60 0.22 -29.14 16 15 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 16 C 0.03 1.42 5.40 84.66 0.46 1.88 16 17 N -0.92 -49.89 11.02 21.45 0.24 -49.65 16 18 Si 0.97 41.32 29.54 68.60 2.03 43.34 16 19 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 C 0.01 0.30 6.95 83.57 0.58 0.89 16 23 H 0.06 1.75 6.48 -2.38 -0.02 1.73 16 24 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 1.70 5.82 -2.39 -0.01 1.69 16 26 H 0.10 2.07 8.12 -2.39 -0.02 2.05 16 27 H 0.06 1.77 8.01 -2.38 -0.02 1.75 16 28 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 29 H 0.17 4.08 8.06 -2.91 -0.02 4.05 16 30 H 0.18 3.38 8.06 -2.91 -0.02 3.35 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 3.52 4.81 -2.39 -0.01 3.51 16 33 H 0.38 21.97 6.34 -74.06 -0.47 21.50 16 34 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 35 H 0.08 3.28 5.86 -2.39 -0.01 3.26 16 36 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -58.62 304.17 -1.55 -60.17 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: 0.62 Total: 39.92 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 4.20 Total: -35.86 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -5.06 Total: -73.40 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -2.02 Total: -34.99 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.32 Total: 0.82 kcal Total: -58.62 -1.55 -60.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530389011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.368 kcal (2) G-P(sol) polarization free energy of solvation -58.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds