Wall clock time and date at job start Mon Mar 30 2020 00:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00600 * 2 1 4 4 C 1.53001 * 109.47069 * 270.00057 * 3 2 1 5 5 C 1.52998 * 109.47291 * 179.97438 * 4 3 2 6 6 S 1.80994 * 109.47226 * 179.97438 * 5 4 3 7 7 C 1.76197 * 100.00296 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99788 * 359.97438 * 7 6 5 9 9 C 1.38799 * 120.00428 * 180.02562 * 7 6 5 10 10 N 1.31627 * 119.99835 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 119.99800 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46996 * 90.00142 * 11 9 7 13 13 H 1.48508 * 109.47321 * 210.00070 * 11 9 7 14 14 H 1.48498 * 109.47313 * 330.00135 * 11 9 7 15 15 C 1.39673 * 119.99729 * 179.97438 * 2 1 3 16 16 C 1.38971 * 120.04941 * 179.97438 * 15 2 1 17 17 C 1.38105 * 120.03782 * 180.02562 * 16 15 2 18 18 C 1.38223 * 120.12887 * 359.97438 * 17 16 15 19 19 C 1.38772 * 120.09207 * 0.02562 * 18 17 16 20 20 O 1.35890 * 120.01540 * 180.02562 * 19 18 17 21 21 C 1.38611 * 119.96162 * 0.02562 * 19 18 17 22 22 H 1.08999 * 109.47097 * 270.00396 * 1 2 3 23 23 H 1.09010 * 109.46498 * 30.00249 * 1 2 3 24 24 H 1.09000 * 109.47510 * 149.99810 * 1 2 3 25 25 H 1.08997 * 109.47233 * 29.99627 * 3 2 1 26 26 H 1.08992 * 109.47515 * 149.99923 * 3 2 1 27 27 H 1.09005 * 109.46598 * 299.99587 * 4 3 2 28 28 H 1.08996 * 109.47497 * 59.99428 * 4 3 2 29 29 H 1.08997 * 109.47242 * 299.99711 * 5 4 3 30 30 H 1.09005 * 109.47054 * 59.99675 * 5 4 3 31 31 H 0.97007 * 119.99642 * 179.97438 * 10 9 7 32 32 H 1.08004 * 119.97746 * 0.02731 * 16 15 2 33 33 H 1.08004 * 119.93923 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.95161 * 179.97438 * 18 17 16 35 35 H 0.96705 * 113.99927 * 269.99184 * 20 19 18 36 36 H 1.08005 * 120.06230 * 180.25248 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2172 3.0355 -1.4426 6 16 3.5195 3.5576 -3.1490 7 6 4.3872 5.0634 -2.8592 8 1 4.5754 5.3922 -1.8477 9 6 4.8281 5.8278 -3.9307 10 7 5.4758 6.9530 -3.7140 11 14 4.5020 5.2595 -5.6799 12 1 3.2023 5.8077 -6.1443 13 1 5.5892 5.7435 -6.5684 14 1 4.4554 3.7758 -5.7179 15 6 2.1633 -1.2096 0.0005 16 6 3.5530 -1.2109 0.0000 17 6 4.2432 -2.4071 0.0000 18 6 3.5545 -3.6055 0.0011 19 6 2.1668 -3.6105 0.0016 20 8 1.4913 -4.7896 0.0032 21 6 1.4702 -2.4122 0.0005 22 1 -0.3633 0.0001 1.0277 23 1 -0.3633 0.8901 -0.5139 24 1 -0.3634 -0.8899 -0.5138 25 1 1.6086 2.0283 0.5138 26 1 3.1499 1.1383 0.5138 27 1 3.0417 0.9505 -1.9563 28 1 1.5003 1.8406 -1.9564 29 1 2.6278 3.7950 -0.9289 30 1 4.1696 2.9055 -0.9286 31 1 5.7842 7.4869 -4.4629 32 1 4.0935 -0.2758 -0.0004 33 1 5.3233 -2.4062 -0.0008 34 1 4.0972 -4.5393 0.0007 35 1 1.2953 -5.1318 -0.8798 36 1 0.3902 -2.4141 0.0051 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533383488.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:40 Heat of formation + Delta-G solvation = -21.955892 kcal Electronic energy + Delta-G solvation = -17228.227585 eV Core-core repulsion = 14417.491603 eV Total energy + Delta-G solvation = -2810.735982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.01146 -37.92775 -35.83396 -33.26375 -32.46357 -30.16004 -29.70621 -27.34743 -25.73885 -24.80863 -22.42857 -21.84321 -20.68278 -18.43341 -17.49312 -17.00164 -16.15218 -15.64402 -15.13332 -15.01770 -14.76589 -14.59434 -14.29197 -13.91409 -13.69839 -12.87999 -12.60223 -12.37811 -12.20411 -12.16297 -12.07770 -11.76627 -11.30547 -11.09004 -11.05671 -10.70136 -10.51063 -10.42509 -9.92536 -9.69642 -9.03263 -8.78732 -8.59977 -7.36330 -6.97836 -6.30986 -4.03630 1.25062 1.49796 2.88341 3.08347 3.27793 3.43363 3.57103 3.66680 4.16391 4.29191 4.74166 4.78577 4.87105 5.07649 5.08517 5.12574 5.20773 5.25905 5.41239 5.46575 5.51697 5.58493 5.60351 5.66810 5.79553 5.80911 6.14612 6.18584 6.34787 6.39989 6.50028 6.57657 6.60689 7.17556 7.35328 7.56996 7.92792 8.41479 9.14959 10.78517 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031339 B = 0.003554 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.240943 B = 7876.313806 C = 8137.355908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.628 5.628 3 C 0.125 3.875 4 C -0.119 4.119 5 C -0.082 4.082 6 S -0.215 6.215 7 C -0.503 4.503 8 H 0.088 0.912 9 C 0.092 3.908 10 N -0.882 5.882 11 Si 0.861 3.139 12 H -0.269 1.269 13 H -0.275 1.275 14 H -0.238 1.238 15 C 0.236 3.764 16 C -0.202 4.202 17 C -0.056 4.056 18 C -0.209 4.209 19 C 0.146 3.854 20 O -0.504 6.504 21 C -0.229 4.229 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.271 0.729 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.389 0.611 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 -19.003 7.107 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.337 5.337 3 C 0.001 3.999 4 C -0.159 4.159 5 C -0.231 4.231 6 S 0.013 5.987 7 C -0.650 4.650 8 H 0.106 0.894 9 C -0.116 4.116 10 N -0.518 5.518 11 Si 0.686 3.314 12 H -0.194 1.194 13 H -0.201 1.201 14 H -0.162 1.162 15 C 0.133 3.867 16 C -0.225 4.225 17 C -0.074 4.074 18 C -0.230 4.230 19 C 0.101 3.899 20 O -0.314 6.314 21 C -0.252 4.252 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.245 0.755 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.517 -19.083 6.667 21.935 hybrid contribution 0.249 0.646 -0.229 0.729 sum -8.268 -18.437 6.438 21.207 Atomic orbital electron populations 1.21650 0.79683 1.02787 1.01041 1.46558 1.04930 1.02999 1.79209 1.21576 0.97139 0.84082 0.97132 1.21780 1.00993 0.96629 0.96501 1.22984 1.01907 0.98099 1.00114 1.84201 1.75314 1.31111 1.08074 1.22124 1.40778 1.04661 0.97479 0.89391 1.24793 0.93542 0.93961 0.99345 1.69939 1.36578 1.12934 1.32389 0.86674 0.78766 0.81826 0.84096 1.19386 1.20059 1.16199 1.17649 0.91130 0.85446 0.92512 1.20834 0.92165 0.99123 1.10339 1.20777 0.99622 0.91352 0.95688 1.21121 0.93299 0.98614 1.09931 1.18137 0.89743 0.84359 0.97656 1.84777 1.76950 1.36146 1.33494 1.20833 1.00062 0.90718 1.13627 0.93404 0.91152 0.91527 0.90553 0.90407 0.91124 0.91417 0.91377 0.91289 0.91951 0.85386 0.85680 0.86099 0.75504 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.19 59.85 0.61 1.45 16 2 N -0.63 -7.27 3.01 -179.64 -0.54 -7.81 16 3 C 0.13 1.50 5.16 -4.04 -0.02 1.48 16 4 C -0.12 -1.76 5.54 -26.73 -0.15 -1.91 16 5 C -0.08 -1.52 5.67 37.16 0.21 -1.31 16 6 S -0.21 -5.17 19.41 -107.50 -2.09 -7.26 16 7 C -0.50 -14.46 10.04 30.94 0.31 -14.15 16 8 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 9 C 0.09 2.67 5.50 -17.43 -0.10 2.58 16 10 N -0.88 -26.63 13.97 55.49 0.78 -25.86 16 11 Si 0.86 21.45 27.74 -169.99 -4.71 16.74 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 15 C 0.24 2.91 6.55 -83.81 -0.55 2.36 16 16 C -0.20 -2.48 9.20 -39.36 -0.36 -2.84 16 17 C -0.06 -0.62 10.03 -39.64 -0.40 -1.02 16 18 C -0.21 -2.31 9.98 -39.39 -0.39 -2.71 16 19 C 0.15 1.66 6.70 -39.25 -0.26 1.40 16 20 O -0.50 -4.97 13.50 -19.39 -0.26 -5.23 16 21 C -0.23 -2.67 9.14 -39.24 -0.36 -3.03 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.61 8.07 -51.92 -0.42 0.19 16 24 H 0.07 0.56 6.20 -51.93 -0.32 0.24 16 25 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 26 H 0.08 0.91 6.19 -51.93 -0.32 0.59 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 30 H 0.07 1.27 8.14 -51.91 -0.42 0.85 16 31 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.13 1.54 6.14 -52.48 -0.32 1.22 16 33 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.39 1.96 9.06 45.56 0.41 2.38 16 36 H 0.13 1.31 6.14 -52.48 -0.32 0.98 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -32.58 315.34 -7.78 -40.37 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.25 Total: 2.00 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -1.46 Total: -17.70 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.23 Total: -33.67 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.26 Total: -5.23 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.74 kcal Atomic # 16 Polarization: -5.17 SS G_CDS: -2.09 Total: -7.26 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.58 -7.78 -40.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533383488.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.411 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds