Wall clock time and date at job start Mon Mar 30 2020 00:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00600 * 2 1 4 4 C 1.53001 * 109.47069 * 270.00057 * 3 2 1 5 5 C 1.52998 * 109.47291 * 179.97438 * 4 3 2 6 6 S 1.80994 * 109.47226 * 179.97438 * 5 4 3 7 7 C 1.76197 * 100.00296 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99788 * 359.97438 * 7 6 5 9 9 C 1.38799 * 120.00428 * 180.02562 * 7 6 5 10 10 N 1.31627 * 119.99835 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 119.99800 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46996 * 90.00142 * 11 9 7 13 13 H 1.48508 * 109.47321 * 210.00070 * 11 9 7 14 14 H 1.48498 * 109.47313 * 330.00135 * 11 9 7 15 15 C 1.39673 * 119.99729 * 179.97438 * 2 1 3 16 16 C 1.38971 * 120.04941 * 179.97438 * 15 2 1 17 17 C 1.38105 * 120.03782 * 180.02562 * 16 15 2 18 18 C 1.38223 * 120.12887 * 359.97438 * 17 16 15 19 19 C 1.38772 * 120.09207 * 0.02562 * 18 17 16 20 20 O 1.35890 * 120.01540 * 180.02562 * 19 18 17 21 21 C 1.38611 * 119.96162 * 0.02562 * 19 18 17 22 22 H 1.08999 * 109.47097 * 270.00396 * 1 2 3 23 23 H 1.09010 * 109.46498 * 30.00249 * 1 2 3 24 24 H 1.09000 * 109.47510 * 149.99810 * 1 2 3 25 25 H 1.08997 * 109.47233 * 29.99627 * 3 2 1 26 26 H 1.08992 * 109.47515 * 149.99923 * 3 2 1 27 27 H 1.09005 * 109.46598 * 299.99587 * 4 3 2 28 28 H 1.08996 * 109.47497 * 59.99428 * 4 3 2 29 29 H 1.08997 * 109.47242 * 299.99711 * 5 4 3 30 30 H 1.09005 * 109.47054 * 59.99675 * 5 4 3 31 31 H 0.97007 * 119.99642 * 179.97438 * 10 9 7 32 32 H 1.08004 * 119.97746 * 0.02731 * 16 15 2 33 33 H 1.08004 * 119.93923 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.95161 * 179.97438 * 18 17 16 35 35 H 0.96705 * 113.99927 * 269.99184 * 20 19 18 36 36 H 1.08005 * 120.06230 * 180.25248 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2172 3.0355 -1.4426 6 16 3.5195 3.5576 -3.1490 7 6 4.3872 5.0634 -2.8592 8 1 4.5754 5.3922 -1.8477 9 6 4.8281 5.8278 -3.9307 10 7 5.4758 6.9530 -3.7140 11 14 4.5020 5.2595 -5.6799 12 1 3.2023 5.8077 -6.1443 13 1 5.5892 5.7435 -6.5684 14 1 4.4554 3.7758 -5.7179 15 6 2.1633 -1.2096 0.0005 16 6 3.5530 -1.2109 0.0000 17 6 4.2432 -2.4071 0.0000 18 6 3.5545 -3.6055 0.0011 19 6 2.1668 -3.6105 0.0016 20 8 1.4913 -4.7896 0.0032 21 6 1.4702 -2.4122 0.0005 22 1 -0.3633 0.0001 1.0277 23 1 -0.3633 0.8901 -0.5139 24 1 -0.3634 -0.8899 -0.5138 25 1 1.6086 2.0283 0.5138 26 1 3.1499 1.1383 0.5138 27 1 3.0417 0.9505 -1.9563 28 1 1.5003 1.8406 -1.9564 29 1 2.6278 3.7950 -0.9289 30 1 4.1696 2.9055 -0.9286 31 1 5.7842 7.4869 -4.4629 32 1 4.0935 -0.2758 -0.0004 33 1 5.3233 -2.4062 -0.0008 34 1 4.0972 -4.5393 0.0007 35 1 1.2953 -5.1318 -0.8798 36 1 0.3902 -2.4141 0.0051 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533383488.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:39 Heat of formation + Delta-G solvation = -42.870436 kcal Electronic energy + Delta-G solvation = -17229.134508 eV Core-core repulsion = 14417.491603 eV Total energy + Delta-G solvation = -2811.642905 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84829 -38.76439 -36.70697 -34.69500 -34.40265 -31.06984 -30.51872 -28.40877 -27.86296 -25.81693 -23.38600 -22.90568 -21.60775 -19.63722 -19.24066 -17.84737 -17.14617 -17.03127 -16.56354 -16.12444 -16.00322 -15.71063 -15.32007 -15.03863 -14.86310 -14.61321 -13.87629 -13.48586 -13.41203 -13.16512 -12.99561 -12.96371 -12.91179 -12.78023 -12.29177 -12.06413 -11.79987 -11.73775 -11.40487 -11.17048 -10.72585 -10.54632 -9.63475 -8.99872 -8.52552 -8.23908 -6.23689 0.40839 0.63905 1.12062 1.30966 1.46916 1.72149 2.18188 2.24094 2.68727 2.83938 2.85719 3.40939 3.87686 3.94111 4.11330 4.22270 4.29628 4.35009 4.38037 4.41723 4.59307 4.67977 4.68298 4.80399 4.83227 4.91408 4.96217 5.09811 5.22828 5.34264 5.56130 5.65268 5.69395 5.81781 6.09915 6.32457 6.51356 6.91934 6.92061 8.60560 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031339 B = 0.003554 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.240943 B = 7876.313806 C = 8137.355908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.631 5.631 3 C 0.133 3.867 4 C -0.103 4.103 5 C -0.068 4.068 6 S -0.225 6.225 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.038 3.962 10 N -0.923 5.923 11 Si 0.925 3.075 12 H -0.261 1.261 13 H -0.263 1.263 14 H -0.231 1.231 15 C 0.223 3.777 16 C -0.221 4.221 17 C -0.060 4.060 18 C -0.217 4.217 19 C 0.143 3.857 20 O -0.511 6.511 21 C -0.238 4.238 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.277 0.723 32 H 0.125 0.875 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.410 0.590 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.308 -20.820 6.741 23.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.341 5.341 3 C 0.008 3.992 4 C -0.143 4.143 5 C -0.217 4.217 6 S 0.003 5.997 7 C -0.668 4.668 8 H 0.070 0.930 9 C -0.167 4.167 10 N -0.561 5.561 11 Si 0.746 3.254 12 H -0.186 1.186 13 H -0.188 1.188 14 H -0.154 1.154 15 C 0.120 3.880 16 C -0.243 4.243 17 C -0.078 4.078 18 C -0.237 4.237 19 C 0.098 3.902 20 O -0.325 6.325 21 C -0.261 4.261 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.269 0.731 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.597 -20.919 6.300 23.862 hybrid contribution 0.558 1.135 0.007 1.265 sum -9.038 -19.784 6.307 22.646 Atomic orbital electron populations 1.21800 0.78309 1.03477 1.01917 1.46611 1.05772 1.02434 1.79236 1.21424 0.97920 0.84873 0.94986 1.21649 1.00050 0.93993 0.98644 1.23045 1.02620 1.00031 0.96020 1.83925 1.74452 1.28353 1.12997 1.22343 1.41375 1.07009 0.96103 0.92967 1.25765 0.93193 0.93978 1.03742 1.70039 1.37731 1.14271 1.34041 0.85722 0.79154 0.81752 0.78762 1.18600 1.18775 1.15410 1.17818 0.91342 0.85957 0.92885 1.20958 0.92485 0.99484 1.11400 1.21023 1.00605 0.91125 0.95073 1.21348 0.93472 0.99189 1.09720 1.18272 0.90042 0.84784 0.97103 1.84721 1.76744 1.35533 1.35453 1.20984 1.00672 0.90631 1.13765 0.92405 0.90577 0.90755 0.89109 0.90130 0.91978 0.91309 0.91054 0.91288 0.91407 0.85690 0.84052 0.84701 0.73076 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.41 10.19 127.77 1.30 2.71 16 2 N -0.63 -13.42 3.01 -722.26 -2.17 -15.59 16 3 C 0.13 2.94 5.16 86.38 0.45 3.39 16 4 C -0.10 -2.89 5.54 30.59 0.17 -2.72 16 5 C -0.07 -2.47 5.67 71.98 0.41 -2.06 16 6 S -0.23 -10.71 19.41 -56.49 -1.10 -11.80 16 7 C -0.52 -30.48 10.04 67.95 0.68 -29.80 16 8 H 0.05 3.31 8.03 -2.91 -0.02 3.29 16 9 C 0.04 2.22 5.50 84.86 0.47 2.69 16 10 N -0.92 -56.68 13.97 21.65 0.30 -56.38 16 11 Si 0.92 44.03 27.74 68.60 1.90 45.94 16 12 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 13 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.23 -10.62 6.74 99.48 0.67 -9.95 16 15 C 0.22 5.17 6.55 38.20 0.25 5.43 16 16 C -0.22 -5.18 9.20 22.41 0.21 -4.97 16 17 C -0.06 -1.25 10.03 22.23 0.22 -1.03 16 18 C -0.22 -4.43 9.98 22.39 0.22 -4.21 16 19 C 0.14 3.01 6.70 22.49 0.15 3.16 16 20 O -0.51 -9.01 13.50 -92.31 -1.25 -10.26 16 21 C -0.24 -5.13 9.14 22.49 0.21 -4.93 16 22 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.08 1.14 8.07 -2.38 -0.02 1.12 16 24 H 0.07 1.08 6.20 -2.39 -0.01 1.06 16 25 H 0.09 1.78 8.07 -2.39 -0.02 1.76 16 26 H 0.08 1.76 6.19 -2.39 -0.01 1.75 16 27 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 2.55 8.14 -2.40 -0.02 2.53 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.28 15.65 8.31 -92.70 -0.77 14.88 16 32 H 0.13 2.91 6.14 -2.91 -0.02 2.89 16 33 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 34 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.41 3.21 9.06 -74.05 -0.67 2.54 16 36 H 0.14 2.55 6.14 -2.91 -0.02 2.53 16 Total: -1.00 -69.70 315.34 2.79 -66.91 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.37 Total: 13.52 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 4.73 Total: -32.33 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -1.87 Total: -71.97 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -1.25 Total: -10.26 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.94 kcal Atomic # 16 Polarization: -10.71 SS G_CDS: -1.10 Total: -11.80 kcal Total: -69.70 2.79 -66.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533383488.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.035 kcal (2) G-P(sol) polarization free energy of solvation -69.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds