Wall clock time and date at job start Mon Mar 30 2020 00:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47395 * 2 1 4 4 O 1.42903 * 109.47523 * 239.99536 * 2 1 3 5 5 C 1.53004 * 109.47023 * 119.99589 * 2 1 3 6 6 N 1.46499 * 109.47198 * 185.00121 * 5 2 1 7 7 C 1.40002 * 119.99701 * 180.27645 * 6 5 2 8 8 C 1.38638 * 120.10094 * 359.72549 * 7 6 5 9 9 C 1.38289 * 120.00392 * 179.97438 * 8 7 6 10 10 C 1.38266 * 120.20726 * 0.04542 * 9 8 7 11 11 C 1.38246 * 120.19268 * 359.97438 * 10 9 8 12 12 C 1.38731 * 119.99715 * 359.67373 * 11 10 9 13 13 S 1.76197 * 120.10266 * 180.32161 * 12 11 10 14 14 C 1.81401 * 103.00265 * 0.27904 * 13 12 11 15 15 C 1.50693 * 109.47056 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00448 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00152 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99655 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00572 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47105 * 89.99663 * 19 17 15 21 21 H 1.48498 * 109.47291 * 209.99521 * 19 17 15 22 22 H 1.48501 * 109.46990 * 329.99869 * 19 17 15 23 23 H 1.08991 * 109.47437 * 300.00370 * 1 2 3 24 24 H 1.09004 * 109.46778 * 60.00640 * 1 2 3 25 25 H 1.09005 * 109.47209 * 179.97438 * 1 2 3 26 26 H 0.96706 * 113.99936 * 300.00702 * 4 2 1 27 27 H 1.09009 * 109.46730 * 64.99908 * 5 2 1 28 28 H 1.08998 * 109.46846 * 305.00453 * 5 2 1 29 29 H 0.97001 * 119.99790 * 359.97438 * 6 5 2 30 30 H 1.07994 * 119.99846 * 359.97438 * 8 7 6 31 31 H 1.08001 * 119.89694 * 180.02562 * 9 8 7 32 32 H 1.07996 * 119.90616 * 179.97438 * 10 9 8 33 33 H 1.08004 * 120.00452 * 179.97438 * 11 10 9 34 34 H 1.08993 * 109.46727 * 300.00168 * 14 13 12 35 35 H 1.09000 * 109.46825 * 59.99523 * 14 13 12 36 36 H 0.97006 * 120.00609 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 3.5000 -0.6178 1.3111 7 6 4.1995 -1.2098 2.3695 8 6 3.5121 -1.8894 3.3633 9 6 4.2051 -2.4739 4.4077 10 6 5.5835 -2.3823 4.4655 11 6 6.2773 -1.7062 3.4792 12 6 5.5910 -1.1230 2.4239 13 16 6.4732 -0.2680 1.1609 14 6 8.2019 -0.4388 1.6834 15 6 9.0980 0.2519 0.6880 16 1 8.6704 0.7447 -0.1726 17 6 10.4639 0.2547 0.8760 18 7 10.9846 -0.3449 1.9242 19 14 11.5749 1.1102 -0.3582 20 1 11.7661 2.5263 0.0463 21 1 12.8916 0.4246 -0.3975 22 1 10.9502 1.0601 -1.7045 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.7210 -1.5953 -1.2328 27 1 1.7515 -1.7715 1.2057 28 1 1.6053 -0.2616 2.1370 29 1 3.9824 -0.1429 0.6163 30 1 2.4354 -1.9625 3.3219 31 1 3.6679 -3.0033 5.1807 32 1 6.1197 -2.8402 5.2835 33 1 7.3540 -1.6361 3.5276 34 1 8.3311 0.0156 2.6656 35 1 8.4631 -1.4957 1.7348 36 1 11.9456 -0.3427 2.0568 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569333176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:41 Heat of formation + Delta-G solvation = -40.580036 kcal Electronic energy + Delta-G solvation = -17414.103697 eV Core-core repulsion = 14602.560112 eV Total energy + Delta-G solvation = -2811.543586 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.13284 -37.88770 -34.83790 -33.19929 -31.59267 -30.64729 -28.91813 -28.50185 -25.66002 -23.24223 -22.80591 -21.64056 -20.97213 -17.64163 -16.90016 -16.33952 -16.18429 -16.08155 -15.37158 -14.70283 -14.35093 -13.99480 -13.78185 -13.62327 -13.15480 -12.86754 -12.78594 -12.56483 -12.31740 -12.26115 -12.00553 -11.51885 -11.14487 -10.91811 -10.86893 -10.65720 -10.31593 -9.93764 -9.85816 -9.62780 -9.09802 -8.99938 -8.58888 -7.45785 -6.28736 -6.22359 -4.27437 1.75344 1.99359 2.59520 3.25291 3.31021 3.36318 3.51980 3.80224 4.18617 4.24320 4.33457 4.50397 4.79663 4.87550 5.15097 5.21943 5.24348 5.33682 5.41144 5.45477 5.66329 5.72422 5.84690 5.89590 6.07394 6.32445 6.54398 6.74527 6.99671 7.03376 7.06325 7.19843 7.41879 7.61978 7.71135 7.95540 7.99988 8.73701 9.36084 10.88954 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.004848 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.495514 B = 5774.033607 C = 7129.003118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 H 0.105 0.895 4 O -0.556 6.556 5 C 0.098 3.902 6 N -0.741 5.741 7 C 0.222 3.778 8 C -0.191 4.191 9 C -0.095 4.095 10 C -0.159 4.159 11 C -0.089 4.089 12 C -0.136 4.136 13 S -0.176 6.176 14 C 0.078 3.922 15 C -0.517 4.517 16 H 0.068 0.932 17 C 0.068 3.932 18 N -0.890 5.890 19 Si 0.907 3.093 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.270 1.270 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.375 0.625 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.408 0.592 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.918 -2.631 1.173 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.031 3.969 3 H 0.123 0.877 4 O -0.361 6.361 5 C -0.028 4.028 6 N -0.374 5.374 7 C 0.115 3.885 8 C -0.216 4.216 9 C -0.116 4.116 10 C -0.181 4.181 11 C -0.114 4.114 12 C -0.253 4.253 13 S 0.069 5.931 14 C -0.069 4.069 15 C -0.556 4.556 16 H 0.086 0.914 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.734 3.266 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.195 1.195 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.222 0.778 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.246 0.754 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.148 0.852 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.001 -1.490 0.098 19.060 hybrid contribution 1.019 -0.654 0.607 1.355 sum -17.982 -2.144 0.705 18.123 Atomic orbital electron populations 1.22423 0.95528 1.02803 1.03170 1.22141 0.93258 0.97307 0.84227 0.87734 1.86657 1.77184 1.29055 1.43234 1.21990 0.82201 1.00172 0.98415 1.44620 1.04603 1.61373 1.26760 1.17307 0.89118 0.93455 0.88660 1.20392 0.98756 1.05598 0.96845 1.20748 0.94152 0.99294 0.97443 1.20792 0.94139 1.03216 0.99952 1.21187 1.00279 0.96812 0.93151 1.21515 0.94391 1.07525 1.01844 1.84989 1.08965 1.67334 1.31820 1.21308 0.84704 1.00851 1.00060 1.20637 0.90595 1.35683 1.08708 0.91412 1.24948 0.97646 0.95218 0.95867 1.69949 1.12556 1.42602 1.27690 0.86335 0.79529 0.79454 0.81264 1.20303 1.20916 1.19501 0.91281 0.91328 0.92073 0.77779 0.92404 0.91794 0.75406 0.86725 0.86783 0.86659 0.85218 0.93953 0.93932 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 9.53 37.16 0.35 -0.84 16 2 C 0.09 0.84 3.62 -26.73 -0.10 0.74 16 3 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 4 O -0.56 -6.10 13.29 -35.23 -0.47 -6.56 16 5 C 0.10 1.02 4.56 -4.04 -0.02 1.01 16 6 N -0.74 -11.04 5.63 -58.44 -0.33 -11.37 16 7 C 0.22 3.81 6.66 -83.50 -0.56 3.25 16 8 C -0.19 -2.83 9.31 -39.41 -0.37 -3.20 16 9 C -0.09 -1.37 10.04 -39.55 -0.40 -1.77 16 10 C -0.16 -2.59 10.04 -39.57 -0.40 -2.99 16 11 C -0.09 -1.73 9.36 -39.40 -0.37 -2.10 16 12 C -0.14 -2.72 6.12 -38.92 -0.24 -2.96 16 13 S -0.18 -3.93 20.37 -107.50 -2.19 -6.12 16 14 C 0.08 2.03 4.09 36.00 0.15 2.18 16 15 C -0.52 -14.53 9.13 -34.44 -0.31 -14.85 16 16 H 0.07 1.89 7.71 -52.48 -0.40 1.49 16 17 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 18 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 19 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.37 2.82 9.05 45.56 0.41 3.24 16 27 H 0.06 0.55 7.95 -51.92 -0.41 0.14 16 28 H 0.06 0.62 7.96 -51.93 -0.41 0.20 16 29 H 0.41 6.70 7.02 -40.82 -0.29 6.41 16 30 H 0.11 1.38 6.74 -52.49 -0.35 1.03 16 31 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.13 2.70 5.88 -52.48 -0.31 2.39 16 34 H 0.04 1.15 7.74 -51.93 -0.40 0.75 16 35 H 0.04 1.16 7.76 -51.92 -0.40 0.76 16 36 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -30.72 316.14 -9.10 -39.82 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -4.24 Total: 7.92 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.35 Total: -19.73 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.41 Total: -36.40 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.47 Total: -6.56 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -2.19 Total: -6.12 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.72 -9.10 -39.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569333176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.756 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds