Wall clock time and date at job start Mon Mar 30 2020 00:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47395 * 2 1 4 4 O 1.42903 * 109.47523 * 239.99536 * 2 1 3 5 5 C 1.53004 * 109.47023 * 119.99589 * 2 1 3 6 6 N 1.46499 * 109.47198 * 185.00121 * 5 2 1 7 7 C 1.40002 * 119.99701 * 180.27645 * 6 5 2 8 8 C 1.38638 * 120.10094 * 359.72549 * 7 6 5 9 9 C 1.38289 * 120.00392 * 179.97438 * 8 7 6 10 10 C 1.38266 * 120.20726 * 0.04542 * 9 8 7 11 11 C 1.38246 * 120.19268 * 359.97438 * 10 9 8 12 12 C 1.38731 * 119.99715 * 359.67373 * 11 10 9 13 13 S 1.76197 * 120.10266 * 180.32161 * 12 11 10 14 14 C 1.81401 * 103.00265 * 0.27904 * 13 12 11 15 15 C 1.50693 * 109.47056 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00448 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00152 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99655 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00572 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47105 * 89.99663 * 19 17 15 21 21 H 1.48498 * 109.47291 * 209.99521 * 19 17 15 22 22 H 1.48501 * 109.46990 * 329.99869 * 19 17 15 23 23 H 1.08991 * 109.47437 * 300.00370 * 1 2 3 24 24 H 1.09004 * 109.46778 * 60.00640 * 1 2 3 25 25 H 1.09005 * 109.47209 * 179.97438 * 1 2 3 26 26 H 0.96706 * 113.99936 * 300.00702 * 4 2 1 27 27 H 1.09009 * 109.46730 * 64.99908 * 5 2 1 28 28 H 1.08998 * 109.46846 * 305.00453 * 5 2 1 29 29 H 0.97001 * 119.99790 * 359.97438 * 6 5 2 30 30 H 1.07994 * 119.99846 * 359.97438 * 8 7 6 31 31 H 1.08001 * 119.89694 * 180.02562 * 9 8 7 32 32 H 1.07996 * 119.90616 * 179.97438 * 10 9 8 33 33 H 1.08004 * 120.00452 * 179.97438 * 11 10 9 34 34 H 1.08993 * 109.46727 * 300.00168 * 14 13 12 35 35 H 1.09000 * 109.46825 * 59.99523 * 14 13 12 36 36 H 0.97006 * 120.00609 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 3.5000 -0.6178 1.3111 7 6 4.1995 -1.2098 2.3695 8 6 3.5121 -1.8894 3.3633 9 6 4.2051 -2.4739 4.4077 10 6 5.5835 -2.3823 4.4655 11 6 6.2773 -1.7062 3.4792 12 6 5.5910 -1.1230 2.4239 13 16 6.4732 -0.2680 1.1609 14 6 8.2019 -0.4388 1.6834 15 6 9.0980 0.2519 0.6880 16 1 8.6704 0.7447 -0.1726 17 6 10.4639 0.2547 0.8760 18 7 10.9846 -0.3449 1.9242 19 14 11.5749 1.1102 -0.3582 20 1 11.7661 2.5263 0.0463 21 1 12.8916 0.4246 -0.3975 22 1 10.9502 1.0601 -1.7045 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.7210 -1.5953 -1.2328 27 1 1.7515 -1.7715 1.2057 28 1 1.6053 -0.2616 2.1370 29 1 3.9824 -0.1429 0.6163 30 1 2.4354 -1.9625 3.3219 31 1 3.6679 -3.0033 5.1807 32 1 6.1197 -2.8402 5.2835 33 1 7.3540 -1.6361 3.5276 34 1 8.3311 0.0156 2.6656 35 1 8.4631 -1.4957 1.7348 36 1 11.9456 -0.3427 2.0568 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569333176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:41 Heat of formation + Delta-G solvation = -61.447876 kcal Electronic energy + Delta-G solvation = -17415.008595 eV Core-core repulsion = 14602.560112 eV Total energy + Delta-G solvation = -2812.448483 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.32349 -38.78621 -35.96352 -35.33160 -32.42494 -32.00674 -30.64853 -29.92966 -26.62499 -25.28727 -23.96809 -22.65312 -22.17871 -19.17229 -18.25577 -17.85101 -17.44992 -16.98243 -16.80530 -16.26052 -15.61891 -15.13162 -14.95556 -14.79783 -14.68998 -14.43495 -14.31184 -14.14034 -13.49594 -13.22917 -12.98969 -12.78558 -12.75552 -12.59904 -12.30787 -11.81772 -11.67257 -11.58829 -11.11339 -11.01353 -10.86730 -10.83402 -10.42031 -8.81840 -8.37173 -7.86445 -6.52004 0.41051 0.69105 0.91894 1.38513 1.40099 1.52684 1.88811 2.34008 2.51851 2.91754 2.97468 3.50757 3.73248 3.96741 4.10743 4.20571 4.25146 4.49775 4.57067 4.60706 4.62482 4.78736 4.84868 4.86597 4.88000 5.02005 5.14814 5.26265 5.28218 5.47437 5.52059 5.69673 5.81514 5.96203 6.45060 6.55011 6.68153 6.84143 7.16658 8.75263 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.004848 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.495514 B = 5774.033607 C = 7129.003118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.091 3.909 3 H 0.090 0.910 4 O -0.580 6.580 5 C 0.094 3.906 6 N -0.744 5.744 7 C 0.221 3.779 8 C -0.185 4.185 9 C -0.075 4.075 10 C -0.168 4.168 11 C -0.110 4.110 12 C -0.174 4.174 13 S -0.179 6.179 14 C 0.087 3.913 15 C -0.542 4.542 16 H 0.065 0.935 17 C 0.017 3.983 18 N -0.923 5.923 19 Si 0.980 3.020 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.264 1.264 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.388 0.612 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.397 0.603 30 H 0.154 0.846 31 H 0.159 0.841 32 H 0.135 0.865 33 H 0.097 0.903 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.566 -3.101 1.491 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.032 3.968 3 H 0.108 0.892 4 O -0.388 6.388 5 C -0.029 4.029 6 N -0.375 5.375 7 C 0.112 3.888 8 C -0.209 4.209 9 C -0.096 4.096 10 C -0.189 4.189 11 C -0.135 4.135 12 C -0.290 4.290 13 S 0.064 5.936 14 C -0.060 4.060 15 C -0.581 4.581 16 H 0.083 0.917 17 C -0.185 4.185 18 N -0.561 5.561 19 Si 0.802 3.198 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.189 1.189 23 H 0.099 0.901 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.238 0.762 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.233 0.767 30 H 0.172 0.828 31 H 0.177 0.823 32 H 0.153 0.847 33 H 0.116 0.884 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.702 -1.980 0.432 21.797 hybrid contribution 1.670 -0.587 0.600 1.869 sum -20.032 -2.567 1.031 20.222 Atomic orbital electron populations 1.22338 0.92971 1.03981 1.03681 1.22155 0.95070 0.96257 0.83302 0.89242 1.86625 1.77878 1.30325 1.44001 1.22282 0.79384 1.01611 0.99638 1.44875 1.06441 1.60492 1.25656 1.17548 0.88020 0.93433 0.89800 1.20851 1.00599 1.03902 0.95556 1.21267 0.93203 0.97392 0.97715 1.21053 0.95478 1.02860 0.99558 1.21107 0.99094 0.98578 0.94732 1.21508 0.95705 1.09980 1.01844 1.84612 1.06180 1.69067 1.33750 1.20892 0.87948 0.98581 0.98611 1.20969 0.91702 1.36349 1.09102 0.91712 1.25942 0.99106 0.95606 0.97804 1.70066 1.13197 1.43494 1.29387 0.85227 0.77393 0.78510 0.78624 1.19255 1.19863 1.18853 0.90054 0.91546 0.90547 0.76231 0.90585 0.90071 0.76744 0.82850 0.82300 0.84685 0.88449 0.96592 0.96628 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.53 71.98 0.69 -1.07 16 2 C 0.09 1.53 3.62 30.59 0.11 1.64 16 3 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 4 O -0.58 -12.04 13.29 -148.98 -1.98 -14.02 16 5 C 0.09 1.70 4.56 86.38 0.39 2.09 16 6 N -0.74 -21.26 5.63 -338.82 -1.91 -23.17 16 7 C 0.22 7.29 6.66 38.24 0.25 7.54 16 8 C -0.18 -4.76 9.31 22.38 0.21 -4.55 16 9 C -0.07 -1.87 10.04 22.29 0.22 -1.64 16 10 C -0.17 -5.26 10.04 22.28 0.22 -5.03 16 11 C -0.11 -4.48 9.36 22.39 0.21 -4.27 16 12 C -0.17 -7.15 6.12 22.70 0.14 -7.01 16 13 S -0.18 -8.46 20.37 -56.49 -1.15 -9.61 16 14 C 0.09 4.91 4.09 71.23 0.29 5.20 16 15 C -0.54 -31.96 9.13 25.60 0.23 -31.73 16 16 H 0.06 3.76 7.71 -2.91 -0.02 3.74 16 17 C 0.02 0.96 5.46 84.65 0.46 1.42 16 18 N -0.92 -55.41 13.29 21.45 0.28 -55.13 16 19 Si 0.98 44.39 29.54 68.60 2.03 46.41 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 23 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.39 5.20 9.05 -74.05 -0.67 4.53 16 27 H 0.08 1.14 7.95 -2.38 -0.02 1.12 16 28 H 0.08 1.23 7.96 -2.39 -0.02 1.21 16 29 H 0.40 13.09 7.02 -92.71 -0.65 12.44 16 30 H 0.15 2.78 6.74 -2.91 -0.02 2.76 16 31 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 32 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.10 4.47 5.88 -2.91 -0.02 4.46 16 34 H 0.02 0.95 7.74 -2.39 -0.02 0.93 16 35 H 0.02 0.93 7.76 -2.39 -0.02 0.91 16 36 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -70.19 316.14 0.48 -69.71 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.23 Total: 23.21 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 3.44 Total: -37.40 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -1.62 Total: -78.29 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -1.98 Total: -14.02 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.15 Total: -9.61 kcal Total: -70.19 0.48 -69.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569333176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.261 kcal (2) G-P(sol) polarization free energy of solvation -70.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds