Wall clock time and date at job start Mon Mar 30 2020 00:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46662 * 2 1 4 4 C 1.53010 * 109.46752 * 240.00884 * 2 1 3 5 5 C 1.50689 * 109.46884 * 174.99904 * 4 2 1 6 6 C 1.38427 * 122.54189 * 89.99835 * 5 4 2 7 7 C 1.33394 * 114.92371 * 179.97438 * 6 5 4 8 8 S 1.75889 * 109.58981 * 0.02562 * 7 6 5 9 9 C 1.33388 * 122.53881 * 269.70642 * 5 4 2 10 10 N 1.46496 * 109.47378 * 120.01011 * 2 1 3 11 11 C 1.34774 * 119.99544 * 274.99692 * 10 2 1 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 2 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 2 14 14 C 1.52997 * 109.47238 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99493 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99862 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47256 * 60.00352 * 19 17 15 21 21 H 1.48503 * 109.46819 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47158 * 299.99984 * 19 17 15 23 23 H 1.08997 * 109.46755 * 299.99136 * 1 2 3 24 24 H 1.08992 * 109.47534 * 59.99427 * 1 2 3 25 25 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46333 * 294.99622 * 4 2 1 27 27 H 1.08999 * 109.47264 * 54.99228 * 4 2 1 28 28 H 1.07993 * 122.53725 * 359.97438 * 6 5 4 29 29 H 1.07992 * 125.20533 * 179.97438 * 7 6 5 30 30 H 1.08005 * 125.20266 * 0.02613 * 9 5 4 31 31 H 0.96994 * 120.00700 * 94.99812 * 10 2 1 32 32 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 33 33 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 34 34 H 1.09001 * 109.46832 * 299.99686 * 14 13 11 35 35 H 1.09004 * 109.47261 * 59.99705 * 14 13 11 36 36 H 0.96999 * 119.99718 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2495 5 6 3.5418 -0.6148 -1.3130 6 6 4.3798 -1.5521 -0.7339 7 6 5.6829 -1.3091 -0.8825 8 16 5.9051 0.1763 -1.7979 9 6 4.1644 0.3867 -1.9363 10 7 2.0184 -0.6908 1.1960 11 6 2.1472 -0.0185 2.3570 12 8 1.8583 1.1581 2.4118 13 6 2.6501 -0.7289 3.5873 14 6 2.7009 0.2539 4.7588 15 6 3.2033 -0.4567 5.9891 16 1 3.4610 -1.5044 5.9403 17 6 3.3349 0.2310 7.1770 18 7 3.0216 1.5069 7.2362 19 14 3.9583 -0.6496 8.7018 20 1 5.3197 -1.1832 8.4435 21 1 4.0075 0.3042 9.8389 22 1 3.0425 -1.7701 9.0355 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7516 -1.7714 -1.2058 27 1 1.6052 -0.2616 -2.1371 28 1 4.0068 -2.4148 -0.2020 29 1 6.4796 -1.9290 -0.4988 30 1 3.6745 1.2033 -2.4460 31 1 2.2491 -1.6319 1.1524 32 1 1.9779 -1.5512 3.8323 33 1 3.6494 -1.1208 3.3976 34 1 3.3729 1.0764 4.5140 35 1 1.7014 0.6453 4.9483 36 1 3.1139 1.9906 8.0719 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582353308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:37 Heat of formation + Delta-G solvation = -27.106094 kcal Electronic energy + Delta-G solvation = -17718.528787 eV Core-core repulsion = 14907.569475 eV Total energy + Delta-G solvation = -2810.959312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56453 -38.22752 -35.35436 -33.39679 -31.77056 -30.66660 -29.59606 -27.17410 -25.65958 -23.34266 -22.20319 -20.61559 -19.70080 -18.81243 -17.71216 -16.79405 -15.98442 -15.61119 -15.38223 -14.68397 -14.41511 -13.69301 -13.65868 -13.26326 -13.00298 -12.88978 -12.68414 -12.30219 -12.13208 -11.94053 -11.81843 -11.56782 -11.11568 -10.96835 -10.88136 -10.76958 -10.59274 -9.90716 -9.61482 -9.13162 -8.95875 -8.90114 -8.67061 -8.42540 -8.28653 -5.93029 -3.97297 0.94190 1.59916 1.91849 2.61847 3.35431 3.36299 3.40533 3.42169 3.63693 4.49926 4.68805 4.85860 4.89801 5.10345 5.22037 5.41732 5.43633 5.46239 5.51807 5.60453 5.68264 5.76452 5.94342 6.11848 6.25375 6.28548 6.30245 6.33815 6.39273 6.88103 6.95157 7.77464 7.90962 7.99397 8.11146 8.42663 8.88571 9.11560 9.65902 11.17954 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020674 B = 0.004276 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.059938 B = 6546.518683 C = 7360.020399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.086 0.914 4 C -0.067 4.067 5 C -0.095 4.095 6 C -0.126 4.126 7 C -0.208 4.208 8 S 0.086 5.914 9 C -0.212 4.212 10 N -0.735 5.735 11 C 0.511 3.489 12 O -0.536 6.536 13 C -0.130 4.130 14 C 0.038 3.962 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.139 0.861 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.394 0.606 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.022 0.978 35 H 0.023 0.977 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.875 -7.246 -21.289 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.104 0.896 4 C -0.108 4.108 5 C -0.107 4.107 6 C -0.157 4.157 7 C -0.344 4.344 8 S 0.350 5.650 9 C -0.348 4.348 10 N -0.389 5.389 11 C 0.300 3.700 12 O -0.411 6.411 13 C -0.170 4.170 14 C 0.001 3.999 15 C -0.565 4.565 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.156 0.844 29 H 0.181 0.819 30 H 0.179 0.821 31 H 0.227 0.773 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.954 -5.383 -21.618 22.364 hybrid contribution -0.686 -1.669 1.376 2.269 sum 1.267 -7.052 -20.242 21.473 Atomic orbital electron populations 1.22189 0.95449 1.01949 1.02561 1.20827 0.93522 0.97672 0.83874 0.89632 1.20669 0.90012 1.01823 0.98272 1.18853 0.96816 0.95325 0.99752 1.20059 0.92271 1.01090 1.02241 1.25589 1.00478 1.01300 1.07014 1.84258 1.05527 1.21872 1.53356 1.25434 0.96235 1.04228 1.08891 1.46225 1.69319 1.13661 1.09719 1.21492 0.76387 0.87602 0.84554 1.90655 1.49139 1.16436 1.84917 1.21851 1.00765 1.00981 0.93408 1.18876 0.98277 0.93329 0.89466 1.21194 1.44404 0.96280 0.94653 0.92723 1.25020 0.95575 0.94828 0.98909 1.69989 1.48138 1.08149 1.26588 0.86663 0.79347 0.79372 0.82604 1.20279 1.21286 1.20266 0.91651 0.92085 0.92592 0.90385 0.89710 0.84370 0.81893 0.82055 0.77281 0.90426 0.90454 0.95910 0.95892 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.48 37.16 0.35 -1.49 16 2 C 0.15 1.79 2.56 -67.93 -0.17 1.62 16 3 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 4 C -0.07 -0.61 5.01 -27.88 -0.14 -0.75 16 5 C -0.09 -1.00 4.83 -106.25 -0.51 -1.51 16 6 C -0.13 -1.31 9.53 -41.20 -0.39 -1.71 16 7 C -0.21 -2.17 11.23 29.04 0.33 -1.84 16 8 S 0.09 0.90 23.34 -107.50 -2.51 -1.61 16 9 C -0.21 -2.25 10.98 29.04 0.32 -1.93 16 10 N -0.74 -10.27 4.59 -53.80 -0.25 -10.52 16 11 C 0.51 9.96 7.79 -10.98 -0.09 9.88 16 12 O -0.54 -12.83 15.64 5.56 0.09 -12.75 16 13 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 14 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 15 C -0.53 -15.15 9.11 -34.44 -0.31 -15.47 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.77 13.29 55.43 0.74 -27.03 16 19 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.59 8.13 -51.93 -0.42 0.17 16 27 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 28 H 0.14 1.20 7.89 -52.49 -0.41 0.78 16 29 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.39 4.37 8.22 -40.82 -0.34 4.04 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 322.62 15.07 4.86 4.86 Total: -1.00 -34.47 322.62 -8.42 -42.88 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.33 Total: 0.82 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -1.00 Total: -13.51 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.49 Total: -37.55 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.61 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.47 -8.42 -42.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582353308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.775 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds