Wall clock time and date at job start Mon Mar 30 2020 00:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46662 * 2 1 4 4 C 1.53010 * 109.46752 * 240.00884 * 2 1 3 5 5 C 1.50689 * 109.46884 * 174.99904 * 4 2 1 6 6 C 1.38427 * 122.54189 * 89.99835 * 5 4 2 7 7 C 1.33394 * 114.92371 * 179.97438 * 6 5 4 8 8 S 1.75889 * 109.58981 * 0.02562 * 7 6 5 9 9 C 1.33388 * 122.53881 * 269.70642 * 5 4 2 10 10 N 1.46496 * 109.47378 * 120.01011 * 2 1 3 11 11 C 1.34774 * 119.99544 * 274.99692 * 10 2 1 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 2 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 2 14 14 C 1.52997 * 109.47238 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99493 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99862 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47256 * 60.00352 * 19 17 15 21 21 H 1.48503 * 109.46819 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47158 * 299.99984 * 19 17 15 23 23 H 1.08997 * 109.46755 * 299.99136 * 1 2 3 24 24 H 1.08992 * 109.47534 * 59.99427 * 1 2 3 25 25 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46333 * 294.99622 * 4 2 1 27 27 H 1.08999 * 109.47264 * 54.99228 * 4 2 1 28 28 H 1.07993 * 122.53725 * 359.97438 * 6 5 4 29 29 H 1.07992 * 125.20533 * 179.97438 * 7 6 5 30 30 H 1.08005 * 125.20266 * 0.02613 * 9 5 4 31 31 H 0.96994 * 120.00700 * 94.99812 * 10 2 1 32 32 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 33 33 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 34 34 H 1.09001 * 109.46832 * 299.99686 * 14 13 11 35 35 H 1.09004 * 109.47261 * 59.99705 * 14 13 11 36 36 H 0.96999 * 119.99718 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2495 5 6 3.5418 -0.6148 -1.3130 6 6 4.3798 -1.5521 -0.7339 7 6 5.6829 -1.3091 -0.8825 8 16 5.9051 0.1763 -1.7979 9 6 4.1644 0.3867 -1.9363 10 7 2.0184 -0.6908 1.1960 11 6 2.1472 -0.0185 2.3570 12 8 1.8583 1.1581 2.4118 13 6 2.6501 -0.7289 3.5873 14 6 2.7009 0.2539 4.7588 15 6 3.2033 -0.4567 5.9891 16 1 3.4610 -1.5044 5.9403 17 6 3.3349 0.2310 7.1770 18 7 3.0216 1.5069 7.2362 19 14 3.9583 -0.6496 8.7018 20 1 5.3197 -1.1832 8.4435 21 1 4.0075 0.3042 9.8389 22 1 3.0425 -1.7701 9.0355 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7516 -1.7714 -1.2058 27 1 1.6052 -0.2616 -2.1371 28 1 4.0068 -2.4148 -0.2020 29 1 6.4796 -1.9290 -0.4988 30 1 3.6745 1.2033 -2.4460 31 1 2.2491 -1.6319 1.1524 32 1 1.9779 -1.5512 3.8323 33 1 3.6494 -1.1208 3.3976 34 1 3.3729 1.0764 4.5140 35 1 1.7014 0.6453 4.9483 36 1 3.1139 1.9906 8.0719 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582353308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:37 Heat of formation + Delta-G solvation = -49.610295 kcal Electronic energy + Delta-G solvation = -17719.504642 eV Core-core repulsion = 14907.569475 eV Total energy + Delta-G solvation = -2811.935167 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88232 -39.25369 -36.53593 -35.51670 -33.33227 -32.23909 -30.55430 -27.98586 -27.65454 -24.35683 -23.80028 -21.87276 -21.20880 -19.63268 -18.84831 -18.44534 -17.39640 -17.11395 -16.49054 -16.43480 -16.02637 -14.95395 -14.64427 -14.57195 -14.17768 -14.09806 -13.82812 -13.65945 -13.35268 -13.22292 -13.02046 -12.77177 -12.57735 -12.50340 -12.47044 -11.92991 -11.86649 -11.61837 -11.57374 -11.31196 -10.63964 -10.55665 -10.02350 -9.63626 -9.24998 -8.17154 -6.31476 0.15247 0.81776 1.13931 1.42078 1.46836 1.54546 1.79790 1.83303 2.33466 2.47672 3.15670 3.87633 4.00337 4.10565 4.19546 4.30958 4.41367 4.53538 4.57472 4.59797 4.67464 4.78880 4.85187 4.93615 5.06867 5.15534 5.20751 5.34888 5.48775 5.52637 5.61301 5.64377 5.71759 5.86499 6.18655 6.71076 6.87080 7.38605 7.45609 8.95454 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020674 B = 0.004276 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.059938 B = 6546.518683 C = 7360.020399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.053 0.947 4 C -0.055 4.055 5 C -0.105 4.105 6 C -0.136 4.136 7 C -0.219 4.219 8 S 0.067 5.933 9 C -0.225 4.225 10 N -0.709 5.709 11 C 0.512 3.488 12 O -0.592 6.592 13 C -0.120 4.120 14 C 0.044 3.956 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.939 5.939 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.288 1.288 22 H -0.261 1.261 23 H 0.027 0.973 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.159 0.841 29 H 0.179 0.821 30 H 0.173 0.827 31 H 0.413 0.587 32 H 0.103 0.897 33 H 0.100 0.900 34 H -0.022 1.022 35 H -0.019 1.019 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.971 -10.276 -22.026 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 H 0.072 0.928 4 C -0.095 4.095 5 C -0.118 4.118 6 C -0.166 4.166 7 C -0.354 4.354 8 S 0.331 5.669 9 C -0.360 4.360 10 N -0.362 5.362 11 C 0.300 3.700 12 O -0.472 6.472 13 C -0.159 4.159 14 C 0.006 3.994 15 C -0.582 4.582 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.579 5.579 19 Si 0.798 3.202 20 H -0.187 1.187 21 H -0.213 1.213 22 H -0.186 1.186 23 H 0.046 0.954 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.176 0.824 29 H 0.196 0.804 30 H 0.191 0.809 31 H 0.250 0.750 32 H 0.122 0.878 33 H 0.118 0.882 34 H -0.003 1.003 35 H -0.001 1.001 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.054 -8.482 -22.412 24.052 hybrid contribution -0.723 -0.696 1.528 1.828 sum 1.331 -9.178 -20.885 22.851 Atomic orbital electron populations 1.22141 0.94356 1.03180 1.01951 1.20970 0.94326 0.96440 0.84282 0.92825 1.20645 0.88882 1.03084 0.96914 1.19121 0.97752 0.95277 0.99648 1.20376 0.92268 1.01714 1.02262 1.25890 1.01264 1.01200 1.07026 1.84308 1.06169 1.22624 1.53795 1.25726 0.96177 1.04825 1.09300 1.45946 1.67298 1.14338 1.08616 1.21241 0.76168 0.86821 0.85778 1.90644 1.51901 1.18799 1.85868 1.21621 1.02930 0.99735 0.91656 1.18660 0.94601 0.93629 0.92494 1.21692 1.44028 0.97298 0.95139 0.90609 1.26146 0.95592 0.95536 1.03118 1.70178 1.49618 1.10366 1.27688 0.85373 0.79369 0.78132 0.77365 1.18709 1.21340 1.18591 0.95378 0.89650 0.90356 0.87752 0.87490 0.82364 0.80398 0.80921 0.75018 0.87835 0.88184 1.00335 1.00080 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.48 71.98 0.68 -2.59 16 2 C 0.14 3.30 2.56 45.00 0.12 3.41 16 3 H 0.05 1.61 7.58 -2.39 -0.02 1.59 16 4 C -0.06 -0.81 5.01 29.85 0.15 -0.66 16 5 C -0.11 -1.98 4.83 -20.92 -0.10 -2.08 16 6 C -0.14 -2.49 9.53 21.22 0.20 -2.29 16 7 C -0.22 -4.20 11.23 66.72 0.75 -3.45 16 8 S 0.07 1.37 23.34 -56.49 -1.32 0.05 16 9 C -0.23 -4.49 10.98 66.72 0.73 -3.76 16 10 N -0.71 -18.53 4.59 -442.52 -2.03 -20.57 16 11 C 0.51 20.03 7.79 87.66 0.68 20.71 16 12 O -0.59 -29.74 15.64 -3.02 -0.05 -29.78 16 13 C -0.12 -4.88 5.64 29.85 0.17 -4.72 16 14 C 0.04 2.49 4.26 29.85 0.13 2.62 16 15 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 16 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 17 C -0.01 -0.39 5.46 84.66 0.46 0.08 16 18 N -0.94 -60.42 13.29 21.45 0.28 -60.13 16 19 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 22 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 23 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.10 1.04 8.13 -2.38 -0.02 1.02 16 27 H 0.11 1.17 8.12 -2.39 -0.02 1.15 16 28 H 0.16 2.15 7.89 -2.91 -0.02 2.13 16 29 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 31 H 0.41 7.73 8.22 -92.71 -0.76 6.97 16 32 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 33 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 34 H -0.02 -1.41 8.10 -2.39 -0.02 -1.43 16 35 H -0.02 -1.24 8.10 -2.38 -0.02 -1.26 16 36 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -79.27 322.62 3.42 -75.85 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.30 Total: 11.77 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 4.20 Total: -23.85 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -1.75 Total: -80.70 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.05 Total: -29.78 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -1.32 Total: 0.05 kcal Total: -79.27 3.42 -75.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582353308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.244 kcal (2) G-P(sol) polarization free energy of solvation -79.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds