Wall clock time and date at job start Mon Mar 30 2020 01:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42094 * 109.46881 * 2 1 4 4 C 1.81398 * 103.00024 * 243.60743 * 2 1 3 5 5 C 1.50696 * 109.47250 * 179.97438 * 4 2 1 6 6 C 1.38238 * 119.99728 * 90.00290 * 5 4 2 7 7 C 1.38235 * 120.00108 * 180.02562 * 6 5 4 8 8 C 1.38243 * 119.99617 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99586 * 179.97438 * 8 7 6 10 10 N 1.46897 * 109.46900 * 90.00172 * 9 8 7 11 11 C 1.46897 * 110.99772 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47044 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00361 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99994 * 179.97438 * 12 11 10 15 15 N 1.31508 * 119.99960 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99887 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47088 * 60.00435 * 16 14 12 18 18 H 1.48507 * 109.46778 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47480 * 300.00058 * 16 14 12 20 20 C 1.38233 * 120.00248 * 0.25361 * 8 7 6 21 21 C 1.38234 * 120.00209 * 270.02697 * 5 4 2 22 22 H 1.09007 * 109.47088 * 176.39333 * 1 2 3 23 23 H 1.09004 * 109.47428 * 296.38878 * 1 2 3 24 24 H 1.09001 * 109.47371 * 56.39081 * 1 2 3 25 25 H 1.09003 * 109.46735 * 59.99911 * 4 2 1 26 26 H 1.08997 * 109.47163 * 300.00249 * 4 2 1 27 27 H 1.08000 * 120.00578 * 359.97438 * 6 5 4 28 28 H 1.07999 * 120.00165 * 179.97438 * 7 6 5 29 29 H 1.09000 * 109.46646 * 209.99280 * 9 8 7 30 30 H 1.09000 * 109.47248 * 329.99998 * 9 8 7 31 31 H 1.00901 * 111.00832 * 56.04335 * 10 9 8 32 32 H 1.08993 * 109.47357 * 299.99540 * 11 10 9 33 33 H 1.09004 * 109.47401 * 59.99973 * 11 10 9 34 34 H 0.97001 * 119.99990 * 179.97438 * 15 14 12 35 35 H 1.08004 * 119.99934 * 179.72684 * 20 8 7 36 36 H 1.07999 * 120.00005 * 359.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7857 -1.5833 5 6 3.7194 -0.8606 -1.7357 6 6 4.4067 -1.9674 -1.2734 7 6 5.7803 -2.0360 -1.4127 8 6 6.4667 -0.9975 -2.0139 9 6 7.9643 -1.0720 -2.1653 10 7 8.2957 -1.7075 -3.4475 11 6 9.7506 -1.7969 -3.6302 12 6 10.0514 -2.4533 -4.9530 13 1 9.2428 -2.7725 -5.5937 14 6 11.3591 -2.6462 -5.3453 15 7 12.3438 -2.2580 -4.5649 16 14 11.7319 -3.4605 -6.9846 17 1 11.1432 -2.6535 -8.0833 18 1 13.2027 -3.5507 -7.1693 19 1 11.1464 -4.8250 -7.0041 20 6 5.7801 0.1118 -2.4710 21 6 4.4058 0.1775 -2.3374 22 1 -0.3634 -1.0257 -0.0647 23 1 -0.3634 0.4568 0.9206 24 1 -0.3634 0.5688 -0.8559 25 1 1.8031 -0.1972 -2.3995 26 1 1.8031 -1.7916 -1.6083 27 1 3.8706 -2.7782 -0.8026 28 1 6.3172 -2.9005 -1.0511 29 1 8.3825 -0.0657 -2.1397 30 1 8.3831 -1.6605 -1.3490 31 1 7.8646 -1.2169 -4.2166 32 1 10.1809 -0.7956 -3.6149 33 1 10.1823 -2.3902 -2.8241 34 1 13.2637 -2.3941 -4.8407 35 1 6.3169 0.9251 -2.9367 36 1 3.8689 1.0422 -2.6986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583560230.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:03 Heat of formation + Delta-G solvation = -46.850417 kcal Electronic energy + Delta-G solvation = -16986.503249 eV Core-core repulsion = 14174.687759 eV Total energy + Delta-G solvation = -2811.815490 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38784 -37.21091 -36.78660 -34.91682 -33.44434 -31.81272 -30.11109 -29.56025 -27.70148 -25.02791 -23.65425 -23.36579 -21.67692 -18.69008 -18.41805 -17.26475 -16.85147 -16.62817 -16.24442 -16.15652 -15.75004 -15.40022 -15.21655 -14.89264 -14.59958 -14.25405 -13.89344 -13.66695 -13.53580 -13.37645 -13.18785 -12.92102 -12.76857 -12.66524 -12.54863 -12.21575 -11.87193 -11.81200 -11.35214 -11.32615 -10.67299 -9.80295 -9.66642 -9.18938 -8.96842 -8.23689 -6.35549 0.13479 0.52398 0.89821 1.40725 1.44604 1.52741 1.80860 2.39405 2.82839 2.93424 3.09274 3.67182 3.74158 3.92193 4.01908 4.15015 4.21298 4.32743 4.49380 4.56342 4.58439 4.71666 4.80588 4.83400 5.04822 5.14449 5.18709 5.19883 5.22718 5.50037 5.58537 5.61639 5.78410 5.98702 6.12020 6.39300 6.64927 6.84421 7.35243 8.87705 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.054956 B = 0.002890 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.373708 B = 9685.840328 C = 9818.496327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.488 4.488 2 S 1.287 4.713 3 O -0.925 6.925 4 C -0.399 4.399 5 C -0.079 4.079 6 C -0.103 4.103 7 C -0.105 4.105 8 C -0.087 4.087 9 C 0.096 3.904 10 N -0.679 5.679 11 C 0.207 3.793 12 C -0.538 4.538 13 H 0.064 0.936 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.975 3.025 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.266 1.266 20 C -0.127 4.127 21 C -0.131 4.131 22 H 0.152 0.848 23 H 0.110 0.890 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.172 0.828 27 H 0.178 0.822 28 H 0.136 0.864 29 H 0.020 0.980 30 H 0.074 0.926 31 H 0.332 0.668 32 H -0.041 1.041 33 H 0.005 0.995 34 H 0.266 0.734 35 H 0.111 0.889 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.617 -1.382 11.025 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 1.489 4.511 3 O -0.920 6.920 4 C -0.534 4.534 5 C -0.081 4.081 6 C -0.122 4.122 7 C -0.123 4.123 8 C -0.088 4.088 9 C -0.033 4.033 10 N -0.309 5.309 11 C 0.080 3.920 12 C -0.576 4.576 13 H 0.082 0.918 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.799 3.201 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.191 1.191 20 C -0.146 4.146 21 C -0.150 4.150 22 H 0.170 0.830 23 H 0.129 0.871 24 H 0.086 0.914 25 H 0.104 0.896 26 H 0.190 0.810 27 H 0.195 0.805 28 H 0.154 0.846 29 H 0.039 0.961 30 H 0.093 0.907 31 H 0.149 0.851 32 H -0.023 1.023 33 H 0.023 0.977 34 H 0.075 0.925 35 H 0.130 0.870 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -24.885 -1.627 11.999 27.675 hybrid contribution 0.305 2.355 -2.834 3.697 sum -24.579 0.728 9.166 26.243 Atomic orbital electron populations 1.27646 1.19578 1.10459 1.06982 1.69861 0.86655 0.96448 0.98133 1.93033 1.76298 1.40110 1.82589 1.26694 0.96001 1.13190 1.17539 1.19355 0.94246 0.94867 0.99595 1.21468 0.93317 0.98036 0.99354 1.21305 0.95219 0.97641 0.98168 1.19880 0.94634 0.95214 0.99061 1.20883 0.92042 0.96693 0.93653 1.60642 1.11582 1.55580 1.03127 1.19245 0.83464 0.93137 0.96185 1.21495 0.92497 1.39577 1.04053 0.91817 1.25979 0.95876 0.96217 1.01657 1.70082 0.99744 1.48318 1.39240 0.85350 0.76983 0.79137 0.78612 1.19252 1.20651 1.19091 1.21062 0.94701 0.98162 1.00652 1.21106 0.94063 0.99099 1.00755 0.82996 0.87103 0.91410 0.89608 0.81019 0.80467 0.84645 0.96149 0.90719 0.85146 1.02289 0.97694 0.92514 0.87039 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.19 10.74 113.37 1.22 -1.97 16 2 S 1.29 15.32 13.78 -56.49 -0.78 14.54 16 3 O -0.92 -26.78 18.14 -148.98 -2.70 -29.48 16 4 C -0.40 -4.90 6.05 71.23 0.43 -4.47 16 5 C -0.08 -1.67 5.14 -19.87 -0.10 -1.77 16 6 C -0.10 -1.94 9.70 22.27 0.22 -1.73 16 7 C -0.10 -2.73 9.70 22.27 0.22 -2.51 16 8 C -0.09 -2.79 5.39 -19.86 -0.11 -2.90 16 9 C 0.10 3.66 5.81 85.56 0.50 4.16 16 10 N -0.68 -30.81 6.48 -521.99 -3.38 -34.19 16 11 C 0.21 11.48 5.44 85.56 0.47 11.95 16 12 C -0.54 -31.45 9.32 25.60 0.24 -31.21 16 13 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 14 C 0.00 0.06 5.46 84.66 0.46 0.52 16 15 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 16 Si 0.98 44.80 29.54 68.60 2.03 46.83 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 20 C -0.13 -3.98 9.70 22.27 0.22 -3.77 16 21 C -0.13 -3.66 9.70 22.27 0.22 -3.44 16 22 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 23 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.09 1.25 8.09 -2.39 -0.02 1.23 16 26 H 0.17 0.52 8.09 -2.39 -0.02 0.50 16 27 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 28 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 29 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 30 H 0.07 2.79 8.09 -2.39 -0.02 2.77 16 31 H 0.33 14.69 8.71 -89.69 -0.78 13.91 16 32 H -0.04 -2.42 8.14 -2.39 -0.02 -2.44 16 33 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.11 3.49 8.06 -2.91 -0.02 3.47 16 36 H 0.11 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -82.61 324.82 -0.31 -82.92 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.28 Total: 13.49 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 3.97 Total: -37.14 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -3.10 Total: -91.15 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -2.70 Total: -29.48 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 15.32 SS G_CDS: -0.78 Total: 14.54 kcal Total: -82.61 -0.31 -82.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583560230.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.067 kcal (2) G-P(sol) polarization free energy of solvation -82.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds