Wall clock time and date at job start Mon Mar 30 2020 00:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34968 * 125.97615 * 2 1 4 4 C 1.35239 * 107.85948 * 179.73033 * 3 2 1 5 5 C 1.40400 * 107.86865 * 0.37291 * 4 3 2 6 6 N 1.40194 * 125.97290 * 179.88873 * 5 4 3 7 7 C 1.34777 * 119.99945 * 359.43673 * 6 5 4 8 8 O 1.21593 * 119.99949 * 0.27949 * 7 6 5 9 9 N 1.34777 * 120.00128 * 180.27819 * 7 6 5 10 10 C 1.46499 * 120.00065 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47138 * 179.97438 * 10 9 7 12 12 O 1.21294 * 119.99626 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00072 * 179.97438 * 11 10 9 14 14 C 1.37097 * 120.00087 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00028 * 0.02562 * 14 13 11 16 16 C 1.38951 * 120.00330 * 179.97438 * 14 13 11 17 17 N 1.31402 * 120.00237 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99503 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47553 * 90.00192 * 18 16 14 20 20 H 1.48503 * 109.46838 * 209.99763 * 18 16 14 21 21 H 1.48496 * 109.47351 * 329.99421 * 18 16 14 22 22 N 1.31208 * 108.05535 * 359.62516 * 5 4 3 23 23 H 1.08998 * 109.47453 * 270.01303 * 1 2 3 24 24 H 1.08996 * 109.47391 * 30.01599 * 1 2 3 25 25 H 1.09007 * 109.46828 * 150.01745 * 1 2 3 26 26 H 1.08007 * 126.06490 * 359.97438 * 3 2 1 27 27 H 1.08006 * 126.06729 * 180.24532 * 4 3 2 28 28 H 0.97001 * 120.00268 * 179.71997 * 6 5 4 29 29 H 0.97000 * 119.99549 * 359.97438 * 9 7 6 30 30 H 1.09000 * 109.47602 * 299.99940 * 10 9 7 31 31 H 1.09006 * 109.46868 * 59.99976 * 10 9 7 32 32 H 0.97002 * 120.00040 * 0.02562 * 13 11 10 33 33 H 0.96997 * 120.00234 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0922 0.0000 4 6 3.5431 0.6717 0.0061 5 6 3.5371 -0.7323 0.0012 6 7 4.6681 -1.5606 0.0028 7 6 5.9015 -1.0172 -0.0020 8 8 6.0332 0.1916 -0.0026 9 7 6.9888 -1.8136 -0.0062 10 6 8.3294 -1.2228 -0.0109 11 6 9.3620 -2.3205 -0.0143 12 8 9.0124 -3.4819 -0.0134 13 7 10.6739 -2.0115 -0.0193 14 6 11.6132 -3.0101 -0.0219 15 1 11.3020 -4.0443 -0.0203 16 6 12.9658 -2.6916 -0.0277 17 7 13.8661 -3.6487 -0.0307 18 14 13.5040 -0.9029 -0.0312 19 1 13.6524 -0.4278 1.3680 20 1 14.8049 -0.7788 -0.7366 21 1 12.4828 -0.0800 -0.7277 22 7 2.2879 -1.1335 0.0007 23 1 -0.3634 0.0002 1.0276 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5136 26 1 1.9248 2.1197 -0.0004 27 1 4.4189 1.3038 0.0114 28 1 4.5631 -2.5249 0.0032 29 1 6.8836 -2.7778 -0.0054 30 1 8.4515 -0.6058 -0.9011 31 1 8.4578 -0.6064 0.8789 32 1 10.9534 -1.0827 -0.0204 33 1 14.8103 -3.4264 -0.0343 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588240972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:23 Heat of formation + Delta-G solvation = 33.875053 kcal Electronic energy + Delta-G solvation = -19106.758613 eV Core-core repulsion = 15784.443179 eV Total energy + Delta-G solvation = -3322.315434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.41078 -39.90344 -38.42652 -35.16728 -34.55855 -33.83598 -32.33483 -31.80185 -30.14955 -28.03843 -26.22475 -24.36951 -22.08301 -21.23714 -20.33111 -19.62072 -18.77360 -18.01807 -17.42462 -16.25067 -15.96448 -15.66953 -15.39648 -15.04359 -14.72154 -14.29137 -14.23621 -13.73568 -13.16845 -13.10191 -13.04161 -12.72761 -12.51966 -12.19713 -12.18052 -11.24793 -10.87368 -10.83692 -10.64711 -10.07503 -10.03526 -9.70921 -9.07293 -8.90676 -8.79382 -8.31896 -8.20761 -6.41498 -3.94296 1.73217 1.94961 2.63203 2.83828 2.99417 3.04127 3.12567 3.41507 3.56063 4.02838 4.11941 4.42703 4.54515 4.71355 4.87144 5.10588 5.13345 5.28605 5.54471 5.64359 5.73888 5.76993 5.80508 6.13586 6.53770 6.69158 6.83944 6.94485 7.43431 7.58196 7.98577 8.04580 8.42283 8.53853 8.80755 9.28642 9.61756 10.70590 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.060002 B = 0.003083 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.537212 B = 9080.603016 C = 9526.678707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.378 5.378 3 C 0.058 3.942 4 C -0.263 4.263 5 C 0.324 3.676 6 N -0.649 5.649 7 C 0.716 3.284 8 O -0.574 6.574 9 N -0.716 5.716 10 C 0.126 3.874 11 C 0.437 3.563 12 O -0.579 6.579 13 N -0.575 5.575 14 C -0.310 4.310 15 H 0.122 0.878 16 C 0.045 3.955 17 N -0.874 5.874 18 Si 0.879 3.121 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.266 1.266 22 N -0.332 5.332 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.176 0.824 27 H 0.175 0.825 28 H 0.413 0.587 29 H 0.411 0.589 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.375 0.625 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.987 10.752 -0.001 24.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.162 5.162 3 C -0.088 4.088 4 C -0.294 4.294 5 C 0.067 3.933 6 N -0.300 5.300 7 C 0.415 3.585 8 O -0.450 6.450 9 N -0.373 5.373 10 C -0.002 4.002 11 C 0.223 3.777 12 O -0.463 6.463 13 N -0.213 5.213 14 C -0.439 4.439 15 H 0.139 0.861 16 C -0.159 4.159 17 N -0.513 5.513 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.192 1.192 22 N -0.163 5.163 23 H 0.090 0.910 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.193 0.807 27 H 0.192 0.808 28 H 0.249 0.751 29 H 0.249 0.751 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.208 0.792 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.659 9.998 -0.002 24.767 hybrid contribution 1.014 1.058 -0.007 1.466 sum -21.645 11.056 -0.010 24.305 Atomic orbital electron populations 1.21787 0.74116 1.04300 1.03138 1.47998 1.06031 1.03009 1.59177 1.22593 0.90728 0.93464 1.01967 1.21922 0.97926 0.93319 1.16238 1.18825 0.85976 0.90301 0.98164 1.41597 1.02003 1.09535 1.76855 1.15546 0.79581 0.85350 0.78067 1.90837 1.85031 1.12103 1.57037 1.44688 1.03793 1.10689 1.78173 1.20876 0.80460 0.95298 1.03608 1.19610 0.83316 0.89597 0.85141 1.90546 1.79919 1.20175 1.55687 1.42103 1.05239 1.08578 1.65350 1.19439 0.85271 0.90465 1.48711 0.86068 1.25071 0.95496 0.98250 0.97103 1.69612 1.01549 1.32036 1.48064 0.86665 0.79456 0.84194 0.79149 1.19377 1.20000 1.19153 1.77325 0.99289 1.07598 1.32047 0.91011 0.89525 0.89491 0.80694 0.80767 0.75139 0.75095 0.89488 0.89489 0.79188 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.59 11.47 59.84 0.69 1.28 16 2 N -0.38 -3.97 4.01 -68.18 -0.27 -4.24 16 3 C 0.06 0.58 11.48 -17.24 -0.20 0.39 16 4 C -0.26 -3.57 9.61 -39.84 -0.38 -3.95 16 5 C 0.32 4.66 8.11 -154.36 -1.25 3.41 16 6 N -0.65 -8.79 5.46 -15.51 -0.08 -8.87 16 7 C 0.72 11.14 8.53 -86.92 -0.74 10.40 16 8 O -0.57 -10.14 13.47 5.28 0.07 -10.07 16 9 N -0.72 -11.14 5.53 -66.41 -0.37 -11.51 16 10 C 0.13 2.10 6.15 -5.19 -0.03 2.07 16 11 C 0.44 9.39 7.85 -10.98 -0.09 9.31 16 12 O -0.58 -14.36 15.24 5.55 0.08 -14.28 16 13 N -0.58 -13.13 5.09 -10.96 -0.06 -13.19 16 14 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 15 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 16 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 17 N -0.87 -24.80 13.96 55.50 0.77 -24.02 16 18 Si 0.88 18.78 27.74 -169.99 -4.71 14.07 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 22 N -0.33 -4.53 12.59 31.44 0.40 -4.13 16 23 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.18 1.02 8.06 -52.48 -0.42 0.60 16 27 H 0.18 2.57 5.91 -52.48 -0.31 2.26 16 28 H 0.41 4.59 8.84 -40.82 -0.36 4.23 16 29 H 0.41 6.25 7.45 -40.82 -0.30 5.94 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.37 7.51 5.76 -40.82 -0.24 7.28 16 33 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 295.10 15.07 4.45 4.45 Total: -1.00 -34.54 295.10 -5.28 -39.82 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -3.30 Total: 16.60 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: -2.25 Total: 15.39 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: 0.39 Total: -65.97 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.16 Total: -24.35 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.71 Total: 14.07 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.54 -5.28 -39.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588240972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.690 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds