Wall clock time and date at job start Mon Mar 30 2020 00:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40065 * 126.04688 * 2 1 4 4 C 1.30839 * 108.37512 * 179.74208 * 3 2 1 5 5 C 1.39773 * 108.31961 * 359.97438 * 4 3 2 6 6 C 1.35246 * 126.04218 * 179.69510 * 2 1 3 7 7 N 1.39506 * 126.21422 * 0.25743 * 6 2 1 8 8 C 1.34776 * 119.99732 * 180.02562 * 7 6 2 9 9 O 1.21592 * 120.00218 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99899 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99786 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.46757 * 179.97438 * 11 10 8 13 13 O 1.21290 * 120.00335 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99860 * 179.97438 * 12 11 10 15 15 C 1.37093 * 120.00204 * 179.97438 * 14 12 11 16 16 H 1.08001 * 119.99792 * 359.97438 * 15 14 12 17 17 C 1.38952 * 120.00192 * 180.02562 * 15 14 12 18 18 N 1.31408 * 119.99774 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99912 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46975 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47015 * 120.00055 * 19 17 15 22 22 H 1.48501 * 109.46810 * 240.00106 * 19 17 15 23 23 H 1.08997 * 109.47642 * 90.02359 * 1 2 3 24 24 H 1.08997 * 109.47307 * 210.02552 * 1 2 3 25 25 H 1.09007 * 109.46604 * 330.01947 * 1 2 3 26 26 H 1.07993 * 125.84346 * 180.02562 * 4 3 2 27 27 H 1.07995 * 126.08439 * 179.97438 * 5 4 3 28 28 H 0.96994 * 120.00190 * 0.02562 * 7 6 2 29 29 H 0.96994 * 120.00023 * 359.97438 * 10 8 7 30 30 H 1.09000 * 109.47075 * 299.99519 * 11 10 8 31 31 H 1.08995 * 109.47466 * 59.99609 * 11 10 8 32 32 H 0.97004 * 120.00203 * 0.02562 * 14 12 11 33 33 H 0.97007 * 119.99671 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1325 0.0000 4 6 3.5359 0.7353 0.0056 5 6 3.5517 -0.6623 0.0099 6 6 2.2608 -1.0936 0.0058 7 7 1.8356 -2.4223 0.0078 8 6 2.7420 -3.4197 0.0143 9 8 3.9302 -3.1616 0.0179 10 7 2.3313 -4.7034 0.0157 11 6 3.3165 -5.7877 0.0234 12 6 2.6027 -7.1149 0.0241 13 8 1.3904 -7.1516 0.0192 14 7 3.3115 -8.2613 0.0301 15 6 2.6622 -9.4687 0.0313 16 1 1.5827 -9.5013 0.0278 17 6 3.3930 -10.6505 0.0381 18 7 4.7065 -10.6108 0.0438 19 14 2.5082 -12.2957 0.0389 20 1 1.0407 -12.0685 0.0323 21 1 2.8958 -13.0668 -1.1696 22 1 2.8849 -13.0596 1.2554 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5136 26 1 4.4041 1.3774 0.0074 27 1 4.4316 -1.2885 0.0146 28 1 0.8878 -2.6282 0.0046 29 1 1.3835 -4.9094 0.0125 30 1 3.9454 -5.7134 -0.8638 31 1 3.9369 -5.7087 0.9160 32 1 4.2811 -8.2320 0.0344 33 1 5.2166 -11.4359 0.0489 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588276548.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:26 Heat of formation + Delta-G solvation = 25.981572 kcal Electronic energy + Delta-G solvation = -19272.477838 eV Core-core repulsion = 15949.820117 eV Total energy + Delta-G solvation = -3322.657721 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.55111 -39.86717 -38.29989 -35.03354 -34.61764 -33.82226 -33.19009 -31.44794 -29.30254 -27.39441 -26.88271 -24.61190 -22.27677 -21.19324 -20.31720 -19.59611 -18.60785 -18.21454 -17.58008 -16.13833 -15.85368 -15.43949 -15.33740 -14.90208 -14.67646 -14.18733 -14.17169 -13.76753 -13.58703 -13.39392 -12.97039 -12.56543 -12.29809 -12.15963 -11.68612 -11.20150 -11.04990 -10.82474 -10.45332 -10.37409 -10.04311 -9.70648 -9.13007 -9.00059 -8.71671 -8.16563 -8.05875 -6.57026 -3.99276 1.75557 1.87328 2.76191 2.81222 3.06213 3.19327 3.25572 3.27281 3.67122 3.96353 4.13008 4.34093 4.78274 4.86543 4.99709 5.11609 5.11668 5.34419 5.50218 5.78223 5.88054 5.91421 5.97444 6.10266 6.50985 6.68546 6.77056 7.01920 7.40999 7.63193 7.85959 7.90454 8.37572 8.45156 8.98795 9.32624 9.79830 10.59720 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.056651 B = 0.003115 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.137239 B = 8987.742220 C = 9461.432102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.396 5.396 3 N -0.301 5.301 4 C 0.061 3.939 5 C -0.283 4.283 6 C 0.330 3.670 7 N -0.663 5.663 8 C 0.713 3.287 9 O -0.563 6.563 10 N -0.714 5.714 11 C 0.128 3.872 12 C 0.427 3.573 13 O -0.599 6.599 14 N -0.546 5.546 15 C -0.306 4.306 16 H 0.106 0.894 17 C 0.026 3.974 18 N -0.893 5.893 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.185 0.815 27 H 0.176 0.824 28 H 0.407 0.593 29 H 0.409 0.591 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.397 0.603 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.772 16.097 0.009 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.184 5.184 3 N -0.124 5.124 4 C -0.125 4.125 5 C -0.315 4.315 6 C 0.109 3.891 7 N -0.313 5.313 8 C 0.412 3.588 9 O -0.438 6.438 10 N -0.371 5.371 11 C 0.000 4.000 12 C 0.212 3.788 13 O -0.486 6.486 14 N -0.181 5.181 15 C -0.435 4.435 16 H 0.124 0.876 17 C -0.177 4.177 18 N -0.532 5.532 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.111 0.889 26 H 0.202 0.798 27 H 0.193 0.807 28 H 0.242 0.758 29 H 0.247 0.753 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.231 0.769 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.261 16.993 0.002 17.789 hybrid contribution -0.301 -1.807 0.001 1.832 sum -5.562 15.186 0.004 16.173 Atomic orbital electron populations 1.21795 0.74723 1.04373 1.03305 1.48460 1.06201 1.02332 1.61428 1.77426 1.01978 1.05255 1.27693 1.23774 0.95071 0.95124 0.98546 1.21695 0.96088 0.94669 1.19047 1.17664 0.90977 0.79407 1.01014 1.41851 1.10188 1.01987 1.77320 1.15478 0.84584 0.80327 0.78417 1.90872 1.14351 1.82275 1.56341 1.44703 1.11750 1.02713 1.77928 1.20887 0.90457 0.85053 1.03635 1.19686 0.88116 0.85095 0.85889 1.90494 1.13727 1.86782 1.57596 1.41787 1.09424 1.04559 1.62325 1.19775 0.93762 0.81659 1.48335 0.87595 1.25338 0.95527 1.00129 0.96674 1.69620 1.05077 1.29483 1.49068 0.85754 0.79581 0.80850 0.77881 1.19128 1.20565 1.20573 0.90779 0.90155 0.88909 0.79762 0.80686 0.75833 0.75311 0.89518 0.89529 0.76949 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 11.28 59.85 0.68 1.38 16 2 N -0.40 -4.66 4.02 -67.17 -0.27 -4.93 16 3 N -0.30 -3.96 12.56 30.60 0.38 -3.57 16 4 C 0.06 0.74 12.01 -17.40 -0.21 0.53 16 5 C -0.28 -4.01 9.65 -39.78 -0.38 -4.39 16 6 C 0.33 4.38 7.66 -153.14 -1.17 3.21 16 7 N -0.66 -7.97 5.42 -15.84 -0.09 -8.05 16 8 C 0.71 10.75 8.53 -86.92 -0.74 10.01 16 9 O -0.56 -10.03 13.47 5.29 0.07 -9.96 16 10 N -0.71 -10.87 5.53 -66.41 -0.37 -11.24 16 11 C 0.13 2.19 6.15 -5.19 -0.03 2.16 16 12 C 0.43 9.28 7.85 -10.98 -0.09 9.19 16 13 O -0.60 -14.58 15.24 5.55 0.08 -14.50 16 14 N -0.55 -13.03 5.29 -10.96 -0.06 -13.09 16 15 C -0.31 -8.07 9.68 -14.93 -0.14 -8.22 16 16 H 0.11 2.92 7.16 -52.49 -0.38 2.54 16 17 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 18 N -0.89 -23.28 13.05 55.50 0.72 -22.56 16 19 Si 0.93 20.04 29.55 -169.99 -5.02 15.02 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.08 0.40 7.49 -51.93 -0.39 0.01 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.18 2.73 5.82 -52.49 -0.31 2.42 16 28 H 0.41 3.51 7.98 -40.82 -0.33 3.18 16 29 H 0.41 5.94 7.45 -40.82 -0.30 5.64 16 30 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.40 9.08 7.90 -40.82 -0.32 8.76 16 33 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -32.54 296.52 -5.53 -38.07 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -3.27 Total: 15.88 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: -2.19 Total: 14.45 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.33 Total: -63.43 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.16 Total: -24.46 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.54 -5.53 -38.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588276548.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.056 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds