Wall clock time and date at job start Mon Mar 30 2020 00:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47069 * 2 1 4 4 O 1.42904 * 109.46799 * 120.00048 * 2 1 3 5 5 C 1.50700 * 109.47192 * 239.99442 * 2 1 3 6 6 O 1.21286 * 120.00300 * 253.88362 * 5 2 1 7 7 N 1.34777 * 119.99560 * 73.88545 * 5 2 1 8 8 C 1.46504 * 120.00166 * 5.29249 * 7 5 2 9 9 C 1.50702 * 109.46906 * 95.88485 * 8 7 5 10 10 H 1.07994 * 120.00349 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99712 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00184 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00064 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.46972 * 90.00315 * 13 11 9 15 15 H 1.48501 * 109.46816 * 210.00426 * 13 11 9 16 16 H 1.48505 * 109.47057 * 329.99881 * 13 11 9 17 17 C 1.40032 * 120.00161 * 185.29083 * 7 5 2 18 18 C 1.38847 * 120.04601 * 173.03797 * 17 7 5 19 19 C 1.38116 * 119.95240 * 179.77324 * 18 17 7 20 20 C 1.38474 * 120.04299 * 0.50077 * 19 18 17 21 21 F 1.35103 * 119.95234 * 179.72866 * 20 19 18 22 22 C 1.38473 * 120.09251 * 359.74702 * 20 19 18 23 23 C 1.38110 * 120.04348 * 0.02562 * 22 20 19 24 24 H 1.09001 * 109.47485 * 295.31352 * 1 2 3 25 25 H 1.09004 * 109.46931 * 55.31787 * 1 2 3 26 26 H 1.08998 * 109.47540 * 175.31376 * 1 2 3 27 27 H 0.96702 * 114.00274 * 59.99648 * 4 2 1 28 28 H 1.08999 * 109.47413 * 215.88575 * 8 7 5 29 29 H 1.08997 * 109.47151 * 335.88682 * 8 7 5 30 30 H 0.96994 * 120.00168 * 180.02562 * 12 11 9 31 31 H 1.07997 * 120.02283 * 0.02562 * 18 17 7 32 32 H 1.07999 * 119.97533 * 180.23019 * 19 18 17 33 33 H 1.07996 * 119.97857 * 179.97438 * 22 20 19 34 34 H 1.07998 * 120.02064 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0323 -0.7105 -1.2304 6 8 2.5094 -1.8217 -1.1368 7 7 1.9515 -0.1111 -2.4348 8 6 1.4836 1.2736 -2.5340 9 6 2.6693 2.2029 -2.5733 10 1 3.6712 1.8022 -2.5293 11 6 2.4750 3.5648 -2.6666 12 7 1.2549 4.0528 -2.7207 13 14 3.9448 4.7167 -2.7161 14 1 4.3592 4.9299 -4.1259 15 1 3.5735 6.0191 -2.1068 16 1 5.0697 4.1168 -1.9546 17 6 2.3148 -0.8119 -3.5915 18 6 2.0968 -0.2497 -4.8422 19 6 2.4601 -0.9406 -5.9816 20 6 3.0320 -2.1974 -5.8775 21 9 3.3817 -2.8739 -6.9935 22 6 3.2455 -2.7620 -4.6313 23 6 2.8879 -2.0725 -3.4893 24 1 -0.3634 0.4394 0.9290 25 1 -0.3633 0.5848 -0.8451 26 1 -0.3634 -1.0242 -0.0840 27 1 1.7209 -1.5953 1.2330 28 1 0.8968 1.3946 -3.4446 29 1 0.8646 1.5108 -1.6687 30 1 1.1183 5.0108 -2.7867 31 1 1.6471 0.7288 -4.9239 32 1 2.2941 -0.5021 -6.9545 33 1 3.6913 -3.7425 -4.5522 34 1 3.0542 -2.5133 -2.5175 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590633976.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:28 Heat of formation + Delta-G solvation = -92.633204 kcal Electronic energy + Delta-G solvation = -20495.095971 eV Core-core repulsion = 17115.082015 eV Total energy + Delta-G solvation = -3380.013956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.47328 -40.53252 -38.16765 -36.20669 -35.44842 -32.79618 -31.05152 -30.68356 -28.81897 -27.42387 -24.38035 -23.56685 -22.44490 -21.57105 -19.56633 -17.49125 -17.23349 -17.11913 -16.58222 -15.85039 -15.23988 -15.19819 -15.04880 -14.61185 -14.30005 -13.94913 -13.67425 -13.12522 -12.73601 -12.69143 -12.46121 -12.26230 -12.00565 -11.89544 -11.49071 -11.34622 -11.17379 -10.86994 -10.72196 -10.39112 -10.29032 -10.17394 -9.23610 -8.82003 -8.69581 -8.64467 -7.30416 -6.36520 -4.45630 1.51575 1.69346 2.93069 3.15576 3.23223 3.27039 3.41170 4.13246 4.23315 4.53699 4.73503 4.81050 4.97594 5.20857 5.22966 5.25451 5.40805 5.72779 5.77172 5.82133 5.95443 6.10472 6.18594 6.31231 6.52721 6.61702 6.67419 6.73911 6.92267 7.08043 7.54503 7.58803 7.72896 7.76950 7.91417 8.46168 8.64474 9.23615 10.69757 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.008203 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.449110 B = 3412.704334 C = 4980.767128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.092 3.908 3 H 0.141 0.859 4 O -0.542 6.542 5 C 0.492 3.508 6 O -0.540 6.540 7 N -0.529 5.529 8 C 0.219 3.781 9 C -0.546 4.546 10 H 0.064 0.936 11 C 0.070 3.930 12 N -0.888 5.888 13 Si 0.900 3.100 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.271 1.271 17 C 0.163 3.837 18 C -0.116 4.116 19 C -0.134 4.134 20 C 0.051 3.949 21 F -0.152 7.152 22 C -0.137 4.137 23 C -0.154 4.154 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.377 0.623 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.269 0.731 31 H 0.146 0.854 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.174 -7.434 0.067 7.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.030 3.970 3 H 0.158 0.842 4 O -0.347 6.347 5 C 0.283 3.717 6 O -0.421 6.421 7 N -0.248 5.248 8 C 0.100 3.900 9 C -0.584 4.584 10 H 0.082 0.918 11 C -0.134 4.134 12 N -0.525 5.525 13 Si 0.727 3.273 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.196 1.196 17 C 0.066 3.934 18 C -0.137 4.137 19 C -0.153 4.153 20 C 0.031 3.969 21 F -0.131 7.131 22 C -0.157 4.157 23 C -0.174 4.174 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.224 0.776 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.164 0.836 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.798 -7.192 0.282 7.419 hybrid contribution 0.577 0.318 -0.683 0.949 sum -1.220 -6.874 -0.401 6.993 Atomic orbital electron populations 1.22491 0.94055 1.02877 1.04471 1.21909 0.94523 0.98134 0.82484 0.84175 1.86619 1.77663 1.29363 1.41043 1.21750 0.78332 0.85987 0.85671 1.90230 1.45903 1.20760 1.85196 1.46079 1.59228 1.15715 1.03811 1.19945 0.96458 0.73524 1.00034 1.21373 0.92914 0.91054 1.53058 0.91754 1.24906 0.96300 0.98025 0.94199 1.69896 1.20098 1.13898 1.48626 0.86444 0.82392 0.79882 0.78600 1.20301 1.20856 1.19594 1.18108 0.96575 0.91900 0.86772 1.20948 1.01708 1.01156 0.89849 1.20853 1.01343 0.93597 0.99506 1.17723 1.04325 0.92485 0.82351 1.91426 1.90555 1.79926 1.51215 1.21058 1.02810 1.00984 0.90805 1.22693 0.98755 0.94147 1.01774 0.90531 0.89797 0.92320 0.77552 0.93489 0.92530 0.92176 0.83589 0.85072 0.85378 0.79622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 9.23 37.16 0.34 -2.16 16 2 C 0.09 1.53 3.15 -27.88 -0.09 1.44 16 3 H 0.14 2.58 7.23 -51.93 -0.38 2.20 16 4 O -0.54 -8.69 13.07 -54.75 -0.72 -9.40 16 5 C 0.49 9.39 6.92 -10.99 -0.08 9.32 16 6 O -0.54 -10.73 12.71 -13.96 -0.18 -10.91 16 7 N -0.53 -10.59 2.69 -114.72 -0.31 -10.90 16 8 C 0.22 4.72 4.19 -5.19 -0.02 4.70 16 9 C -0.55 -13.39 9.36 -34.44 -0.32 -13.71 16 10 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 11 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -22.73 13.29 55.43 0.74 -21.99 16 13 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 14 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 C 0.16 3.19 6.46 -83.66 -0.54 2.65 16 18 C -0.12 -2.15 9.25 -39.40 -0.36 -2.51 16 19 C -0.13 -2.22 10.02 -39.54 -0.40 -2.62 16 20 C 0.05 0.86 7.30 -39.41 -0.29 0.57 16 21 F -0.15 -2.48 17.27 2.25 0.04 -2.44 16 22 C -0.14 -2.28 10.02 -39.54 -0.40 -2.68 16 23 C -0.15 -2.86 9.05 -39.40 -0.36 -3.21 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.08 1.23 6.18 -51.93 -0.32 0.91 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.38 4.81 8.70 45.56 0.40 5.20 16 28 H 0.05 1.05 6.27 -51.93 -0.33 0.72 16 29 H 0.06 1.19 4.40 -51.93 -0.23 0.96 16 30 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 31 H 0.15 2.76 6.14 -52.49 -0.32 2.44 16 32 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 33 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 34 H 0.19 3.58 4.53 -56.24 -0.25 3.33 16 LS Contribution 292.26 15.07 4.40 4.40 Total: -1.00 -26.88 292.26 -6.31 -33.19 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -2.67 Total: 9.75 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.60 Total: -6.56 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.43 Total: -32.89 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.89 Total: -20.31 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.88 -6.31 -33.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590633976.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.441 kcal (2) G-P(sol) polarization free energy of solvation -26.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds