Wall clock time and date at job start Mon Mar 30 2020 00:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47069 * 2 1 4 4 O 1.42904 * 109.46799 * 120.00048 * 2 1 3 5 5 C 1.50700 * 109.47192 * 239.99442 * 2 1 3 6 6 O 1.21286 * 120.00300 * 253.88362 * 5 2 1 7 7 N 1.34777 * 119.99560 * 73.88545 * 5 2 1 8 8 C 1.46504 * 120.00166 * 5.29249 * 7 5 2 9 9 C 1.50702 * 109.46906 * 95.88485 * 8 7 5 10 10 H 1.07994 * 120.00349 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99712 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00184 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00064 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.46972 * 90.00315 * 13 11 9 15 15 H 1.48501 * 109.46816 * 210.00426 * 13 11 9 16 16 H 1.48505 * 109.47057 * 329.99881 * 13 11 9 17 17 C 1.40032 * 120.00161 * 185.29083 * 7 5 2 18 18 C 1.38847 * 120.04601 * 173.03797 * 17 7 5 19 19 C 1.38116 * 119.95240 * 179.77324 * 18 17 7 20 20 C 1.38474 * 120.04299 * 0.50077 * 19 18 17 21 21 F 1.35103 * 119.95234 * 179.72866 * 20 19 18 22 22 C 1.38473 * 120.09251 * 359.74702 * 20 19 18 23 23 C 1.38110 * 120.04348 * 0.02562 * 22 20 19 24 24 H 1.09001 * 109.47485 * 295.31352 * 1 2 3 25 25 H 1.09004 * 109.46931 * 55.31787 * 1 2 3 26 26 H 1.08998 * 109.47540 * 175.31376 * 1 2 3 27 27 H 0.96702 * 114.00274 * 59.99648 * 4 2 1 28 28 H 1.08999 * 109.47413 * 215.88575 * 8 7 5 29 29 H 1.08997 * 109.47151 * 335.88682 * 8 7 5 30 30 H 0.96994 * 120.00168 * 180.02562 * 12 11 9 31 31 H 1.07997 * 120.02283 * 0.02562 * 18 17 7 32 32 H 1.07999 * 119.97533 * 180.23019 * 19 18 17 33 33 H 1.07996 * 119.97857 * 179.97438 * 22 20 19 34 34 H 1.07998 * 120.02064 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0323 -0.7105 -1.2304 6 8 2.5094 -1.8217 -1.1368 7 7 1.9515 -0.1111 -2.4348 8 6 1.4836 1.2736 -2.5340 9 6 2.6693 2.2029 -2.5733 10 1 3.6712 1.8022 -2.5293 11 6 2.4750 3.5648 -2.6666 12 7 1.2549 4.0528 -2.7207 13 14 3.9448 4.7167 -2.7161 14 1 4.3592 4.9299 -4.1259 15 1 3.5735 6.0191 -2.1068 16 1 5.0697 4.1168 -1.9546 17 6 2.3148 -0.8119 -3.5915 18 6 2.0968 -0.2497 -4.8422 19 6 2.4601 -0.9406 -5.9816 20 6 3.0320 -2.1974 -5.8775 21 9 3.3817 -2.8739 -6.9935 22 6 3.2455 -2.7620 -4.6313 23 6 2.8879 -2.0725 -3.4893 24 1 -0.3634 0.4394 0.9290 25 1 -0.3633 0.5848 -0.8451 26 1 -0.3634 -1.0242 -0.0840 27 1 1.7209 -1.5953 1.2330 28 1 0.8968 1.3946 -3.4446 29 1 0.8646 1.5108 -1.6687 30 1 1.1183 5.0108 -2.7867 31 1 1.6471 0.7288 -4.9239 32 1 2.2941 -0.5021 -6.9545 33 1 3.6913 -3.7425 -4.5522 34 1 3.0542 -2.5133 -2.5175 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590633976.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:28 Heat of formation + Delta-G solvation = -108.078604 kcal Electronic energy + Delta-G solvation = -20495.765734 eV Core-core repulsion = 17115.082015 eV Total energy + Delta-G solvation = -3380.683719 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.79716 -42.01125 -39.55736 -37.54309 -37.03150 -34.64757 -32.34635 -32.07027 -30.28440 -29.10933 -25.79688 -25.19763 -23.89739 -22.98026 -20.99783 -18.93914 -18.83841 -18.62774 -18.20900 -17.23861 -16.63566 -16.61385 -16.44538 -16.29827 -15.73762 -15.32849 -15.09073 -14.55980 -14.37021 -14.10288 -13.90686 -13.61479 -13.44301 -13.28658 -12.99320 -12.93787 -12.68777 -12.53981 -12.24776 -11.99104 -11.92871 -11.60532 -10.86010 -10.65918 -10.18688 -10.05291 -8.81333 -8.25539 -6.40911 0.10014 0.30705 1.39215 1.41312 1.46069 1.52861 1.92243 2.37843 2.74056 3.04521 3.23749 3.37878 3.42132 3.88660 3.96308 3.98742 4.15918 4.30785 4.36856 4.49522 4.69990 4.81947 4.86805 4.99779 5.06478 5.19294 5.24461 5.27283 5.32984 5.61494 5.65355 5.92749 6.10914 6.31390 6.61195 6.69236 7.00180 7.30583 8.78192 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.008203 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.449110 B = 3412.704334 C = 4980.767128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.097 3.903 3 H 0.121 0.879 4 O -0.549 6.549 5 C 0.486 3.514 6 O -0.550 6.550 7 N -0.533 5.533 8 C 0.232 3.768 9 C -0.553 4.553 10 H 0.045 0.955 11 C 0.034 3.966 12 N -0.908 5.908 13 Si 0.949 3.051 14 H -0.275 1.275 15 H -0.276 1.276 16 H -0.277 1.277 17 C 0.138 3.862 18 C -0.127 4.127 19 C -0.126 4.126 20 C 0.052 3.948 21 F -0.146 7.146 22 C -0.129 4.129 23 C -0.163 4.163 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.391 0.609 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.271 0.729 31 H 0.136 0.864 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 -7.963 -0.201 8.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.035 3.965 3 H 0.138 0.862 4 O -0.356 6.356 5 C 0.277 3.723 6 O -0.432 6.432 7 N -0.253 5.253 8 C 0.113 3.887 9 C -0.591 4.591 10 H 0.064 0.936 11 C -0.168 4.168 12 N -0.547 5.547 13 Si 0.775 3.225 14 H -0.201 1.201 15 H -0.201 1.201 16 H -0.202 1.202 17 C 0.042 3.958 18 C -0.148 4.148 19 C -0.145 4.145 20 C 0.032 3.968 21 F -0.125 7.125 22 C -0.148 4.148 23 C -0.183 4.183 24 H 0.113 0.887 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.242 0.758 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.174 0.826 33 H 0.172 0.828 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.715 -7.742 0.011 7.930 hybrid contribution 0.583 0.394 -0.633 0.946 sum -1.132 -7.348 -0.621 7.461 Atomic orbital electron populations 1.22422 0.91608 1.03926 1.04974 1.21806 0.96274 0.96788 0.81613 0.86152 1.86584 1.78003 1.30609 1.40374 1.22236 0.78007 0.86048 0.86012 1.90222 1.46342 1.21226 1.85412 1.46028 1.59620 1.15159 1.04509 1.19664 0.95329 0.74042 0.99705 1.21486 0.92932 0.91832 1.52866 0.93625 1.25460 0.98168 0.99100 0.94084 1.69948 1.21172 1.14248 1.49294 0.85680 0.79839 0.78542 0.78428 1.20107 1.20127 1.20162 1.18420 0.97675 0.92655 0.87041 1.20924 1.02531 1.01075 0.90225 1.21079 1.00071 0.93413 0.99974 1.17768 1.04003 0.92488 0.82578 1.91446 1.90442 1.79760 1.50869 1.21291 1.01691 1.01762 0.90098 1.22641 0.99423 0.93994 1.02228 0.88652 0.90834 0.90723 0.75835 0.94403 0.91955 0.91953 0.84594 0.82618 0.82753 0.80322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.52 9.23 71.98 0.66 -3.85 16 2 C 0.10 3.22 3.15 29.85 0.09 3.31 16 3 H 0.12 4.48 7.23 -2.39 -0.02 4.46 16 4 O -0.55 -17.01 13.07 -130.32 -1.70 -18.71 16 5 C 0.49 18.52 6.92 87.66 0.61 19.13 16 6 O -0.55 -21.73 12.71 15.61 0.20 -21.53 16 7 N -0.53 -21.57 2.69 -635.24 -1.71 -23.28 16 8 C 0.23 10.14 4.19 85.63 0.36 10.50 16 9 C -0.55 -27.45 9.36 25.60 0.24 -27.21 16 10 H 0.05 2.40 7.81 -2.91 -0.02 2.38 16 11 C 0.03 1.69 5.46 84.65 0.46 2.15 16 12 N -0.91 -46.42 13.29 21.45 0.28 -46.14 16 13 Si 0.95 40.60 29.54 68.60 2.03 42.62 16 14 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 15 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 17 C 0.14 5.41 6.46 38.12 0.25 5.66 16 18 C -0.13 -4.67 9.25 22.39 0.21 -4.46 16 19 C -0.13 -4.00 10.02 22.30 0.22 -3.77 16 20 C 0.05 1.62 7.30 22.38 0.16 1.79 16 21 F -0.15 -4.39 17.27 44.97 0.78 -3.61 16 22 C -0.13 -4.06 10.02 22.30 0.22 -3.83 16 23 C -0.16 -5.95 9.05 22.39 0.20 -5.74 16 24 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.07 2.10 6.18 -2.38 -0.01 2.09 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.39 9.42 8.70 -74.06 -0.64 8.78 16 28 H 0.04 1.73 6.27 -2.39 -0.01 1.71 16 29 H 0.06 2.66 4.40 -2.39 -0.01 2.65 16 30 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 31 H 0.14 5.23 6.14 -2.91 -0.02 5.21 16 32 H 0.16 4.08 8.06 -2.91 -0.02 4.05 16 33 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 34 H 0.18 6.83 4.53 -62.28 -0.28 6.55 16 Total: -1.00 -55.67 292.26 3.80 -51.86 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.24 Total: 25.13 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 3.69 Total: -6.34 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -1.43 Total: -69.42 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.50 Total: -40.25 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.78 Total: -3.61 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.62 kcal Total: -55.67 3.80 -51.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590633976.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.216 kcal (2) G-P(sol) polarization free energy of solvation -55.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds