Wall clock time and date at job start Mon Mar 30 2020 00:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47768 * 2 1 4 4 O 1.42903 * 109.47007 * 239.99790 * 2 1 3 5 5 C 1.50703 * 109.46979 * 120.00174 * 2 1 3 6 6 O 1.21294 * 119.99931 * 102.38490 * 5 2 1 7 7 N 1.34772 * 119.99938 * 282.38084 * 5 2 1 8 8 C 1.46496 * 120.00089 * 5.61698 * 7 5 2 9 9 C 1.50697 * 109.47588 * 90.62697 * 8 7 5 10 10 H 1.08002 * 119.99698 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00332 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99685 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00195 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47097 * 89.99612 * 13 11 9 15 15 H 1.48499 * 109.47396 * 209.99651 * 13 11 9 16 16 H 1.48501 * 109.47231 * 330.00156 * 13 11 9 17 17 C 1.40028 * 120.00059 * 185.61441 * 7 5 2 18 18 C 1.38855 * 120.04645 * 187.68980 * 17 7 5 19 19 C 1.38113 * 119.95485 * 179.77109 * 18 17 7 20 20 C 1.38472 * 120.04472 * 0.50180 * 19 18 17 21 21 F 1.35098 * 119.95843 * 179.72551 * 20 19 18 22 22 C 1.38478 * 120.09114 * 359.75055 * 20 19 18 23 23 C 1.38109 * 120.04449 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.46667 * 57.13164 * 1 2 3 25 25 H 1.09000 * 109.47411 * 177.13763 * 1 2 3 26 26 H 1.09002 * 109.46772 * 297.13837 * 1 2 3 27 27 H 0.96702 * 113.99969 * 59.99968 * 4 2 1 28 28 H 1.09002 * 109.47629 * 210.63077 * 8 7 5 29 29 H 1.09005 * 109.47293 * 330.63007 * 8 7 5 30 30 H 0.97011 * 119.99624 * 180.02562 * 12 11 9 31 31 H 1.07998 * 120.01896 * 0.02562 * 18 17 7 32 32 H 1.07996 * 119.97820 * 180.23131 * 19 18 17 33 33 H 1.08003 * 119.97698 * 179.97438 * 22 20 19 34 34 H 1.07996 * 120.02741 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0323 -0.7105 1.2305 6 8 2.4469 -1.8474 1.1476 7 7 2.0210 -0.0826 2.4229 8 6 1.4084 1.2423 2.5474 9 6 -0.0459 1.0912 2.9123 10 1 -0.4713 0.1066 3.0392 11 6 -0.8332 2.2098 3.0850 12 7 -2.1023 2.0778 3.4040 13 14 -0.0974 3.9127 2.8661 14 1 -0.2408 4.3356 1.4498 15 1 -0.8085 4.8759 3.7446 16 1 1.3420 3.8805 3.2297 17 6 2.5947 -0.6966 3.5430 18 6 2.4449 -0.1277 4.8008 19 6 3.0076 -0.7375 5.9049 20 6 3.7294 -1.9098 5.7569 21 9 4.2837 -2.5018 6.8373 22 6 3.8844 -2.4761 4.5027 23 6 3.3185 -1.8725 3.3968 24 1 -0.3633 0.5578 -0.8632 25 1 -0.3634 -1.0264 -0.0513 26 1 -0.3633 0.4688 0.9146 27 1 1.7210 -0.2702 -1.9980 28 1 1.9212 1.8082 3.3251 29 1 1.4916 1.7717 1.5981 30 1 -2.6563 2.8648 3.5252 31 1 1.8853 0.7888 4.9161 32 1 2.8881 -0.2973 6.8839 33 1 4.4481 -3.3903 4.3892 34 1 3.4399 -2.3141 2.4187 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590633981.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:31 Heat of formation + Delta-G solvation = -84.652498 kcal Electronic energy + Delta-G solvation = -20599.226099 eV Core-core repulsion = 17219.558212 eV Total energy + Delta-G solvation = -3379.667887 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.48879 -40.50217 -38.09766 -36.33197 -35.51270 -32.82679 -30.97539 -30.70016 -28.94566 -27.95143 -24.26242 -23.42380 -22.31546 -21.60660 -19.15827 -17.75445 -17.30595 -17.24410 -16.49716 -16.25688 -15.27168 -15.21479 -15.04772 -14.59792 -14.09729 -14.02556 -13.54925 -13.20023 -12.86153 -12.74265 -12.50562 -12.29300 -12.05340 -12.04524 -11.60196 -11.29873 -11.03804 -10.91585 -10.72773 -10.52481 -9.98061 -9.80706 -9.32184 -8.96254 -8.83734 -8.68383 -7.30932 -6.43747 -4.47277 1.49797 1.66438 2.95845 3.00961 3.08884 3.10572 3.20231 4.05923 4.12490 4.54056 4.70594 4.83709 4.93643 5.21024 5.22997 5.28440 5.46228 5.68924 5.74445 5.88488 6.09706 6.19138 6.27344 6.31957 6.38752 6.60617 6.66852 6.70202 6.96798 6.98988 7.14310 7.48452 7.68519 7.79660 8.12148 8.50673 8.62634 9.11259 10.67190 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.008079 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.358381 B = 3464.774657 C = 4898.093562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.095 3.905 3 H 0.079 0.921 4 O -0.552 6.552 5 C 0.528 3.472 6 O -0.519 6.519 7 N -0.529 5.529 8 C 0.194 3.806 9 C -0.548 4.548 10 H 0.086 0.914 11 C 0.083 3.917 12 N -0.877 5.877 13 Si 0.866 3.134 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.262 1.262 17 C 0.164 3.836 18 C -0.116 4.116 19 C -0.132 4.132 20 C 0.053 3.947 21 F -0.151 7.151 22 C -0.135 4.135 23 C -0.146 4.146 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.130 0.870 27 H 0.380 0.620 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.271 0.729 31 H 0.148 0.852 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.682 -0.202 -2.409 8.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.034 3.966 3 H 0.097 0.903 4 O -0.358 6.358 5 C 0.318 3.682 6 O -0.397 6.397 7 N -0.250 5.250 8 C 0.074 3.926 9 C -0.586 4.586 10 H 0.104 0.896 11 C -0.123 4.123 12 N -0.512 5.512 13 Si 0.691 3.309 14 H -0.195 1.195 15 H -0.205 1.205 16 H -0.187 1.187 17 C 0.068 3.932 18 C -0.137 4.137 19 C -0.152 4.152 20 C 0.033 3.967 21 F -0.130 7.130 22 C -0.155 4.155 23 C -0.165 4.165 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.148 0.852 27 H 0.227 0.773 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.166 0.834 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.955 -1.043 -2.016 8.273 hybrid contribution -0.160 1.383 -0.166 1.402 sum 7.795 0.340 -2.182 8.102 Atomic orbital electron populations 1.22898 0.92564 1.03640 1.07255 1.21518 0.95856 0.94663 0.84596 0.90338 1.86526 1.76732 1.57372 1.15127 1.20286 0.77630 0.86055 0.84255 1.90345 1.46104 1.17927 1.85311 1.45586 1.53038 1.20085 1.06245 1.20196 0.95234 0.78555 0.98599 1.21182 0.91540 0.95928 1.49934 0.89647 1.24843 0.94624 0.98882 0.93906 1.69876 1.05671 1.30645 1.45049 0.87003 0.80149 0.84557 0.79146 1.19539 1.20495 1.18655 1.18020 0.94482 0.93624 0.87066 1.20947 1.00795 1.02084 0.89864 1.20860 0.99464 0.95134 0.99724 1.17708 1.00725 0.94856 0.83370 1.91429 1.83949 1.83618 1.54020 1.21032 1.02358 1.01157 0.90940 1.22369 0.97090 0.95285 1.01796 0.92193 0.92157 0.85172 0.77290 0.93618 0.94160 0.91922 0.83437 0.84949 0.85219 0.80307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.53 9.38 37.16 0.35 -3.18 16 2 C 0.10 1.61 3.17 -27.88 -0.09 1.52 16 3 H 0.08 1.18 6.63 -51.93 -0.34 0.84 16 4 O -0.55 -8.71 12.91 -54.49 -0.70 -9.42 16 5 C 0.53 10.61 6.87 -10.99 -0.08 10.53 16 6 O -0.52 -11.39 13.10 -13.72 -0.18 -11.57 16 7 N -0.53 -10.56 2.68 -114.72 -0.31 -10.87 16 8 C 0.19 3.89 3.14 -5.20 -0.02 3.88 16 9 C -0.55 -12.88 6.89 -34.44 -0.24 -13.12 16 10 H 0.09 2.32 8.04 -52.49 -0.42 1.89 16 11 C 0.08 2.02 5.47 -17.82 -0.10 1.93 16 12 N -0.88 -23.30 13.96 55.43 0.77 -22.53 16 13 Si 0.87 17.77 27.47 -169.99 -4.67 13.10 16 14 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 15 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.26 -5.07 6.54 56.52 0.37 -4.70 16 17 C 0.16 3.20 6.49 -83.66 -0.54 2.65 16 18 C -0.12 -2.11 9.13 -39.40 -0.36 -2.47 16 19 C -0.13 -2.17 10.02 -39.54 -0.40 -2.56 16 20 C 0.05 0.89 7.30 -39.41 -0.29 0.60 16 21 F -0.15 -2.44 17.26 2.25 0.04 -2.40 16 22 C -0.14 -2.24 10.02 -39.54 -0.40 -2.64 16 23 C -0.15 -2.71 8.97 -39.40 -0.35 -3.06 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.13 2.64 4.32 -51.93 -0.22 2.41 16 27 H 0.38 3.84 9.08 45.56 0.41 4.25 16 28 H 0.05 0.89 5.65 -51.93 -0.29 0.60 16 29 H 0.04 0.75 5.34 -51.93 -0.28 0.47 16 30 H 0.27 6.76 8.31 -40.81 -0.34 6.42 16 31 H 0.15 2.71 6.25 -52.49 -0.33 2.38 16 32 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 33 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 34 H 0.18 3.52 4.73 -55.14 -0.26 3.26 16 LS Contribution 285.76 15.07 4.31 4.31 Total: -1.00 -28.23 285.76 -5.84 -34.07 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -2.59 Total: 11.24 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.50 Total: -5.93 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.47 Total: -33.40 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.88 Total: -20.99 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -4.67 Total: 13.10 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.23 -5.84 -34.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590633981.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.580 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds