Wall clock time and date at job start Mon Mar 30 2020 00:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47768 * 2 1 4 4 O 1.42903 * 109.47007 * 239.99790 * 2 1 3 5 5 C 1.50703 * 109.46979 * 120.00174 * 2 1 3 6 6 O 1.21294 * 119.99931 * 102.38490 * 5 2 1 7 7 N 1.34772 * 119.99938 * 282.38084 * 5 2 1 8 8 C 1.46496 * 120.00089 * 5.61698 * 7 5 2 9 9 C 1.50697 * 109.47588 * 90.62697 * 8 7 5 10 10 H 1.08002 * 119.99698 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00332 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99685 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00195 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47097 * 89.99612 * 13 11 9 15 15 H 1.48499 * 109.47396 * 209.99651 * 13 11 9 16 16 H 1.48501 * 109.47231 * 330.00156 * 13 11 9 17 17 C 1.40028 * 120.00059 * 185.61441 * 7 5 2 18 18 C 1.38855 * 120.04645 * 187.68980 * 17 7 5 19 19 C 1.38113 * 119.95485 * 179.77109 * 18 17 7 20 20 C 1.38472 * 120.04472 * 0.50180 * 19 18 17 21 21 F 1.35098 * 119.95843 * 179.72551 * 20 19 18 22 22 C 1.38478 * 120.09114 * 359.75055 * 20 19 18 23 23 C 1.38109 * 120.04449 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.46667 * 57.13164 * 1 2 3 25 25 H 1.09000 * 109.47411 * 177.13763 * 1 2 3 26 26 H 1.09002 * 109.46772 * 297.13837 * 1 2 3 27 27 H 0.96702 * 113.99969 * 59.99968 * 4 2 1 28 28 H 1.09002 * 109.47629 * 210.63077 * 8 7 5 29 29 H 1.09005 * 109.47293 * 330.63007 * 8 7 5 30 30 H 0.97011 * 119.99624 * 180.02562 * 12 11 9 31 31 H 1.07998 * 120.01896 * 0.02562 * 18 17 7 32 32 H 1.07996 * 119.97820 * 180.23131 * 19 18 17 33 33 H 1.08003 * 119.97698 * 179.97438 * 22 20 19 34 34 H 1.07996 * 120.02741 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0323 -0.7105 1.2305 6 8 2.4469 -1.8474 1.1476 7 7 2.0210 -0.0826 2.4229 8 6 1.4084 1.2423 2.5474 9 6 -0.0459 1.0912 2.9123 10 1 -0.4713 0.1066 3.0392 11 6 -0.8332 2.2098 3.0850 12 7 -2.1023 2.0778 3.4040 13 14 -0.0974 3.9127 2.8661 14 1 -0.2408 4.3356 1.4498 15 1 -0.8085 4.8759 3.7446 16 1 1.3420 3.8805 3.2297 17 6 2.5947 -0.6966 3.5430 18 6 2.4449 -0.1277 4.8008 19 6 3.0076 -0.7375 5.9049 20 6 3.7294 -1.9098 5.7569 21 9 4.2837 -2.5018 6.8373 22 6 3.8844 -2.4761 4.5027 23 6 3.3185 -1.8725 3.3968 24 1 -0.3633 0.5578 -0.8632 25 1 -0.3634 -1.0264 -0.0513 26 1 -0.3633 0.4688 0.9146 27 1 1.7210 -0.2702 -1.9980 28 1 1.9212 1.8082 3.3251 29 1 1.4916 1.7717 1.5981 30 1 -2.6563 2.8648 3.5252 31 1 1.8853 0.7888 4.9161 32 1 2.8881 -0.2973 6.8839 33 1 4.4481 -3.3903 4.3892 34 1 3.4399 -2.3141 2.4187 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590633981.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:31 Heat of formation + Delta-G solvation = -102.912604 kcal Electronic energy + Delta-G solvation = -20600.017917 eV Core-core repulsion = 17219.558212 eV Total energy + Delta-G solvation = -3380.459705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.80459 -41.99007 -39.48879 -37.65470 -37.08689 -34.62766 -32.36606 -32.07834 -30.47745 -29.53461 -25.67514 -25.04860 -23.79610 -23.01246 -20.61467 -19.28055 -18.91399 -18.70647 -17.99149 -17.57349 -16.72761 -16.58247 -16.46331 -16.15380 -15.55077 -15.48070 -14.99039 -14.65061 -14.51644 -14.11559 -13.92608 -13.76579 -13.52851 -13.45033 -13.04510 -12.90415 -12.48829 -12.45318 -12.20456 -11.96929 -11.71005 -11.13784 -10.89520 -10.77005 -10.34464 -10.06131 -8.78627 -8.29575 -6.37136 0.08601 0.28875 1.42541 1.45232 1.46341 1.53469 1.75630 2.34711 2.71616 3.01619 3.20900 3.35017 3.63865 3.87350 3.94385 3.97886 4.10763 4.27140 4.35315 4.43608 4.69660 4.74210 4.82211 4.91390 5.02100 5.20592 5.23083 5.29634 5.32349 5.55966 5.57201 6.03953 6.10009 6.37887 6.66428 6.82304 6.99597 7.24920 8.85226 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.008079 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.358381 B = 3464.774657 C = 4898.093562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.103 3.897 3 H 0.106 0.894 4 O -0.565 6.565 5 C 0.514 3.486 6 O -0.546 6.546 7 N -0.533 5.533 8 C 0.199 3.801 9 C -0.533 4.533 10 H 0.034 0.966 11 C 0.032 3.968 12 N -0.932 5.932 13 Si 0.929 3.071 14 H -0.255 1.255 15 H -0.289 1.289 16 H -0.237 1.237 17 C 0.138 3.862 18 C -0.126 4.126 19 C -0.125 4.125 20 C 0.054 3.946 21 F -0.145 7.145 22 C -0.129 4.129 23 C -0.157 4.157 24 H 0.094 0.906 25 H 0.043 0.957 26 H 0.099 0.901 27 H 0.405 0.595 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.270 0.730 31 H 0.143 0.857 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.371 1.068 -2.809 9.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.041 3.959 3 H 0.123 0.877 4 O -0.374 6.374 5 C 0.305 3.695 6 O -0.426 6.426 7 N -0.253 5.253 8 C 0.079 3.921 9 C -0.571 4.571 10 H 0.053 0.947 11 C -0.168 4.168 12 N -0.570 5.570 13 Si 0.751 3.249 14 H -0.179 1.179 15 H -0.215 1.215 16 H -0.160 1.160 17 C 0.043 3.957 18 C -0.146 4.146 19 C -0.144 4.144 20 C 0.034 3.966 21 F -0.124 7.124 22 C -0.148 4.148 23 C -0.176 4.176 24 H 0.112 0.888 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.256 0.744 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.177 0.823 33 H 0.172 0.828 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.668 0.223 -2.436 9.973 hybrid contribution -0.689 0.836 -0.007 1.083 sum 8.980 1.058 -2.443 9.366 Atomic orbital electron populations 1.22767 0.92968 1.02800 1.07061 1.21443 0.95184 0.95402 0.83838 0.87663 1.86487 1.76788 1.58062 1.16040 1.21015 0.77196 0.86083 0.85225 1.90333 1.47370 1.19055 1.85832 1.45633 1.52968 1.20085 1.06626 1.20127 0.92822 0.79146 1.00003 1.21113 0.93354 0.93645 1.48981 0.94746 1.25631 0.94635 1.03066 0.93505 1.70034 1.07607 1.31791 1.47551 0.85991 0.80416 0.78835 0.79639 1.17912 1.21536 1.16004 1.18339 0.95387 0.94434 0.87557 1.20970 1.01371 1.02264 0.90001 1.21112 0.98186 0.94759 1.00335 1.17753 1.00492 0.94845 0.83487 1.91449 1.83803 1.83499 1.53677 1.21248 1.01600 1.01618 0.90348 1.22288 0.97924 0.95404 1.02031 0.88769 0.93773 0.88301 0.74357 0.92411 0.91653 0.92056 0.83895 0.82337 0.82795 0.81456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.62 9.38 71.98 0.68 -5.94 16 2 C 0.10 3.31 3.17 29.85 0.09 3.40 16 3 H 0.11 2.82 6.63 -2.39 -0.02 2.80 16 4 O -0.56 -16.62 12.91 -130.56 -1.69 -18.31 16 5 C 0.51 20.52 6.87 87.66 0.60 21.12 16 6 O -0.55 -24.24 13.10 15.34 0.20 -24.04 16 7 N -0.53 -21.14 2.68 -635.23 -1.71 -22.84 16 8 C 0.20 7.73 3.14 85.63 0.27 8.00 16 9 C -0.53 -25.38 6.89 25.60 0.18 -25.20 16 10 H 0.03 1.96 8.04 -2.91 -0.02 1.94 16 11 C 0.03 1.58 5.47 84.65 0.46 2.04 16 12 N -0.93 -50.87 13.96 21.45 0.30 -50.57 16 13 Si 0.93 35.29 27.47 68.60 1.88 37.17 16 14 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 15 H -0.29 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.24 -7.99 6.54 99.48 0.65 -7.34 16 17 C 0.14 5.37 6.49 38.13 0.25 5.62 16 18 C -0.13 -4.47 9.13 22.39 0.20 -4.27 16 19 C -0.12 -3.86 10.02 22.30 0.22 -3.64 16 20 C 0.05 1.69 7.30 22.38 0.16 1.86 16 21 F -0.15 -4.33 17.26 44.97 0.78 -3.56 16 22 C -0.13 -4.09 10.02 22.30 0.22 -3.86 16 23 C -0.16 -5.80 8.97 22.39 0.20 -5.60 16 24 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.10 4.02 4.32 -2.39 -0.01 4.01 16 27 H 0.40 6.96 9.08 -74.06 -0.67 6.28 16 28 H 0.06 2.13 5.65 -2.39 -0.01 2.12 16 29 H 0.07 2.23 5.34 -2.38 -0.01 2.22 16 30 H 0.27 13.86 8.31 -92.70 -0.77 13.09 16 31 H 0.14 5.16 6.25 -2.91 -0.02 5.15 16 32 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 33 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 34 H 0.17 6.68 4.73 -44.97 -0.21 6.46 16 Total: -1.00 -62.56 285.76 3.54 -59.01 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.23 Total: 29.60 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 3.54 Total: -6.47 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -1.41 Total: -73.41 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -1.48 Total: -42.35 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.78 Total: -3.56 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 1.88 Total: 37.17 kcal Total: -62.56 3.54 -59.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590633981.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.899 kcal (2) G-P(sol) polarization free energy of solvation -62.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds