Wall clock time and date at job start Mon Mar 30 2020 00:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46542 * 2 1 4 4 N 1.46893 * 109.47367 * 120.00108 * 2 1 3 5 5 C 1.46899 * 111.00540 * 275.00110 * 4 2 1 6 6 C 1.50690 * 109.47471 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99964 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00154 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99918 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00302 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46828 * 59.99733 * 10 8 6 12 12 H 1.48496 * 109.47213 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47028 * 300.00170 * 10 8 6 14 14 C 1.50701 * 109.47023 * 240.00546 * 2 1 3 15 15 C 1.38235 * 119.99808 * 99.99679 * 14 2 1 16 16 C 1.38243 * 119.99602 * 179.97438 * 15 14 2 17 17 C 1.38232 * 120.00069 * 0.09581 * 16 15 14 18 18 S 1.76204 * 119.99908 * 179.97438 * 17 16 15 19 19 C 1.81399 * 102.99807 * 269.91087 * 18 17 16 20 20 O 1.42097 * 102.99886 * 156.05655 * 18 17 16 21 21 C 1.38234 * 119.99866 * 359.86117 * 17 16 15 22 22 C 1.38230 * 119.99865 * 279.97425 * 14 2 1 23 23 H 1.08997 * 109.46859 * 299.99305 * 1 2 3 24 24 H 1.08999 * 109.47404 * 59.99936 * 1 2 3 25 25 H 1.09000 * 109.46480 * 179.97438 * 1 2 3 26 26 H 1.00901 * 111.00265 * 38.95605 * 4 2 1 27 27 H 1.09003 * 109.46735 * 300.00297 * 5 4 2 28 28 H 1.09006 * 109.46661 * 59.99712 * 5 4 2 29 29 H 0.97001 * 120.00378 * 180.02562 * 9 8 6 30 30 H 1.08000 * 120.00616 * 359.70324 * 15 14 2 31 31 H 1.08001 * 119.99556 * 179.97438 * 16 15 14 32 32 H 1.08994 * 109.47731 * 59.99888 * 19 18 17 33 33 H 1.09003 * 109.47021 * 180.02562 * 19 18 17 34 34 H 1.09004 * 109.47166 * 299.99904 * 19 18 17 35 35 H 1.08000 * 119.99729 * 180.02562 * 21 17 16 36 36 H 1.08001 * 120.00371 * 0.02562 * 22 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0826 0.2225 2.3469 6 6 2.5887 -0.5216 3.5556 7 1 2.8383 -1.5696 3.4791 8 6 2.7321 0.1351 4.7594 9 7 2.4267 1.4109 4.8529 10 14 3.3587 -0.7874 6.2579 11 1 4.7151 -1.3233 5.9778 12 1 3.4212 0.1373 7.4182 13 1 2.4376 -1.9099 6.5692 14 6 2.0323 -0.7103 -1.2305 15 6 2.4586 0.0197 -2.3243 16 6 2.9199 -0.6319 -3.4529 17 6 2.9530 -2.0134 -3.4884 18 16 3.5403 -2.8439 -4.9272 19 6 2.0351 -3.0611 -5.9159 20 8 3.9599 -4.1034 -4.4203 21 6 2.5275 -2.7433 -2.3942 22 6 2.0672 -2.0917 -1.2653 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.4497 -1.4979 1.4100 27 1 2.7589 1.0461 2.1182 28 1 1.0871 0.6162 2.5525 29 1 2.5279 1.8731 5.6996 30 1 2.4273 1.0989 -2.2988 31 1 3.2526 -0.0616 -4.3076 32 1 1.6047 -2.0855 -6.1417 33 1 2.2819 -3.5737 -6.8457 34 1 1.3140 -3.6550 -5.3543 35 1 2.5537 -3.8226 -2.4218 36 1 1.7341 -2.6620 -0.4108 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591757234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:35 Heat of formation + Delta-G solvation = -18.475575 kcal Electronic energy + Delta-G solvation = -17466.855356 eV Core-core repulsion = 14656.270291 eV Total energy + Delta-G solvation = -2810.585064 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.30442 -36.14818 -35.77623 -32.96526 -31.06709 -30.76795 -29.10551 -28.65769 -26.05048 -23.65828 -22.75327 -21.55900 -20.20460 -18.13266 -16.90547 -16.32864 -15.49474 -15.08672 -14.92477 -14.67382 -14.25313 -13.95381 -13.82534 -13.56465 -13.22435 -13.12125 -12.80031 -12.52278 -12.16976 -11.98335 -11.89428 -11.39355 -11.33384 -11.13120 -10.75743 -10.67711 -10.59111 -10.23536 -9.94173 -9.26795 -8.89067 -8.79504 -8.51982 -8.40013 -7.37532 -6.06259 -4.08309 0.99801 1.54034 1.85279 2.62215 3.32464 3.36130 3.39800 3.69296 3.93213 4.40839 4.83303 4.96361 5.02671 5.06445 5.08292 5.28088 5.30530 5.48010 5.58738 5.63845 5.65892 5.74312 5.97598 5.99831 6.10512 6.23762 6.32596 6.37121 6.52850 6.83592 7.09152 7.18710 7.36763 7.74276 8.07847 8.30960 8.54014 9.00243 9.56731 11.04720 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.033100 B = 0.003634 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.730648 B = 7702.918981 C = 8176.466871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.110 3.890 3 H 0.084 0.916 4 N -0.681 5.681 5 C 0.196 3.804 6 C -0.516 4.516 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.900 3.100 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.277 1.277 14 C -0.013 4.013 15 C -0.138 4.138 16 C -0.047 4.047 17 C -0.474 4.474 18 S 1.329 4.671 19 C -0.499 4.499 20 O -0.861 6.861 21 C -0.055 4.055 22 C -0.112 4.112 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.330 0.670 27 H 0.028 0.972 28 H -0.011 1.011 29 H 0.262 0.738 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 -1.937 -22.376 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.001 4.001 3 H 0.103 0.897 4 N -0.311 5.311 5 C 0.069 3.931 6 C -0.555 4.555 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.727 3.273 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.014 4.014 15 C -0.158 4.158 16 C -0.066 4.066 17 C -0.571 4.571 18 S 1.527 4.473 19 C -0.656 4.656 20 O -0.857 6.857 21 C -0.074 4.074 22 C -0.132 4.132 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.147 0.853 27 H 0.046 0.954 28 H 0.007 0.993 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.173 -2.006 -22.607 22.696 hybrid contribution -2.329 -1.341 2.404 3.606 sum -2.156 -3.347 -20.203 20.592 Atomic orbital electron populations 1.22459 0.96786 1.01882 1.02092 1.20574 0.92307 0.97698 0.89541 0.89745 1.60783 1.55250 1.10493 1.04572 1.19584 0.95367 0.91736 0.86379 1.21135 1.43790 0.96955 0.93598 0.92040 1.24975 0.95553 0.94936 0.99000 1.69944 1.48706 1.09017 1.26076 0.86536 0.79537 0.79413 0.81782 1.20105 1.21303 1.20270 1.20284 0.92877 0.93856 0.94405 1.21141 1.01013 0.99988 0.93644 1.20700 0.95906 0.92169 0.97839 1.27367 1.14300 1.02194 1.13243 1.69279 0.91152 0.96003 0.90862 1.27786 1.18712 1.07986 1.11079 1.93103 1.72057 1.42694 1.77836 1.21049 0.94033 0.99649 0.92702 1.21064 1.00101 0.94397 0.97605 0.91671 0.92812 0.92772 0.85294 0.95377 0.99321 0.92816 0.85662 0.85057 0.87245 0.87997 0.90175 0.86100 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 9.14 37.16 0.34 -2.30 16 2 C 0.11 1.89 2.79 -68.87 -0.19 1.70 16 3 H 0.08 1.50 7.66 -51.93 -0.40 1.10 16 4 N -0.68 -14.42 5.69 -109.22 -0.62 -15.04 16 5 C 0.20 5.05 5.24 -4.98 -0.03 5.03 16 6 C -0.52 -14.66 9.32 -34.44 -0.32 -14.98 16 7 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 10 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C -0.01 -0.21 4.96 -104.63 -0.52 -0.73 16 15 C -0.14 -1.77 9.67 -39.58 -0.38 -2.16 16 16 C -0.05 -0.49 9.75 -39.58 -0.39 -0.87 16 17 C -0.47 -5.64 5.61 -39.58 -0.22 -5.87 16 18 S 1.33 11.49 14.19 -107.50 -1.53 9.96 16 19 C -0.50 -3.59 10.70 101.05 1.08 -2.51 16 20 O -0.86 -13.45 16.90 -35.23 -0.60 -14.04 16 21 C -0.06 -0.83 9.44 -39.58 -0.37 -1.20 16 22 C -0.11 -1.78 9.32 -39.59 -0.37 -2.15 16 23 H 0.06 1.08 7.45 -51.93 -0.39 0.69 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.79 8.13 -51.93 -0.42 0.36 16 26 H 0.33 6.71 7.81 -39.29 -0.31 6.40 16 27 H 0.03 0.79 8.06 -51.93 -0.42 0.37 16 28 H -0.01 -0.30 7.44 -51.93 -0.39 -0.68 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 30 H 0.13 1.36 8.04 -52.49 -0.42 0.94 16 31 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.12 1.88 7.46 -52.49 -0.39 1.49 16 36 H 0.12 1.99 7.25 -52.49 -0.38 1.61 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -36.19 318.36 -8.87 -45.06 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.17 Total: 2.93 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -1.47 Total: -24.49 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.11 Total: -41.04 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.60 Total: -14.04 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 11.49 SS G_CDS: -1.53 Total: 9.96 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.19 -8.87 -45.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.584 kcal (2) G-P(sol) polarization free energy of solvation -36.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds