Wall clock time and date at job start Mon Mar 30 2020 00:21:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09005 * 109.46542 * 2 1
4 4 N 1.46893 * 109.47367 * 120.00108 * 2 1 3
5 5 C 1.46899 * 111.00540 * 275.00110 * 4 2 1
6 6 C 1.50690 * 109.47471 * 180.02562 * 5 4 2
7 7 H 1.07997 * 119.99964 * 359.97438 * 6 5 4
8 8 C 1.37878 * 120.00154 * 180.02562 * 6 5 4
9 9 N 1.31512 * 119.99918 * 0.02562 * 8 6 5
10 10 Si 1.86804 * 120.00302 * 179.97438 * 8 6 5
11 11 H 1.48500 * 109.46828 * 59.99733 * 10 8 6
12 12 H 1.48496 * 109.47213 * 180.02562 * 10 8 6
13 13 H 1.48506 * 109.47028 * 300.00170 * 10 8 6
14 14 C 1.50701 * 109.47023 * 240.00546 * 2 1 3
15 15 C 1.38235 * 119.99808 * 99.99679 * 14 2 1
16 16 C 1.38243 * 119.99602 * 179.97438 * 15 14 2
17 17 C 1.38232 * 120.00069 * 0.09581 * 16 15 14
18 18 S 1.76204 * 119.99908 * 179.97438 * 17 16 15
19 19 C 1.81399 * 102.99807 * 269.91087 * 18 17 16
20 20 O 1.42097 * 102.99886 * 156.05655 * 18 17 16
21 21 C 1.38234 * 119.99866 * 359.86117 * 17 16 15
22 22 C 1.38230 * 119.99865 * 279.97425 * 14 2 1
23 23 H 1.08997 * 109.46859 * 299.99305 * 1 2 3
24 24 H 1.08999 * 109.47404 * 59.99936 * 1 2 3
25 25 H 1.09000 * 109.46480 * 179.97438 * 1 2 3
26 26 H 1.00901 * 111.00265 * 38.95605 * 4 2 1
27 27 H 1.09003 * 109.46735 * 300.00297 * 5 4 2
28 28 H 1.09006 * 109.46661 * 59.99712 * 5 4 2
29 29 H 0.97001 * 120.00378 * 180.02562 * 9 8 6
30 30 H 1.08000 * 120.00616 * 359.70324 * 15 14 2
31 31 H 1.08001 * 119.99556 * 179.97438 * 16 15 14
32 32 H 1.08994 * 109.47731 * 59.99888 * 19 18 17
33 33 H 1.09003 * 109.47021 * 180.02562 * 19 18 17
34 34 H 1.09004 * 109.47166 * 299.99904 * 19 18 17
35 35 H 1.08000 * 119.99729 * 180.02562 * 21 17 16
36 36 H 1.08001 * 120.00371 * 0.02562 * 22 14 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 7 2.0197 -0.6925 1.1993
5 6 2.0826 0.2225 2.3469
6 6 2.5887 -0.5216 3.5556
7 1 2.8383 -1.5696 3.4791
8 6 2.7321 0.1351 4.7594
9 7 2.4267 1.4109 4.8529
10 14 3.3587 -0.7874 6.2579
11 1 4.7151 -1.3233 5.9778
12 1 3.4212 0.1373 7.4182
13 1 2.4376 -1.9099 6.5692
14 6 2.0323 -0.7103 -1.2305
15 6 2.4586 0.0197 -2.3243
16 6 2.9199 -0.6319 -3.4529
17 6 2.9530 -2.0134 -3.4884
18 16 3.5403 -2.8439 -4.9272
19 6 2.0351 -3.0611 -5.9159
20 8 3.9599 -4.1034 -4.4203
21 6 2.5275 -2.7433 -2.3942
22 6 2.0672 -2.0917 -1.2653
23 1 -0.3633 0.5137 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3632 -1.0277 -0.0005
26 1 1.4497 -1.4979 1.4100
27 1 2.7589 1.0461 2.1182
28 1 1.0871 0.6162 2.5525
29 1 2.5279 1.8731 5.6996
30 1 2.4273 1.0989 -2.2988
31 1 3.2526 -0.0616 -4.3076
32 1 1.6047 -2.0855 -6.1417
33 1 2.2819 -3.5737 -6.8457
34 1 1.3140 -3.6550 -5.3543
35 1 2.5537 -3.8226 -2.4218
36 1 1.7341 -2.6620 -0.4108
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000591757234.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:21:35
Heat of formation + Delta-G solvation = -44.999558 kcal
Electronic energy + Delta-G solvation = -17468.005522 eV
Core-core repulsion = 14656.270291 eV
Total energy + Delta-G solvation = -2811.735230 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 267.103 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.42885 -37.64980 -36.82456 -34.98452 -32.58142 -31.84409 -30.22571 -29.50373
-27.99236 -24.98052 -24.08694 -23.19251 -21.50652 -19.06244 -18.66704 -17.55900
-16.94995 -16.36948 -16.31901 -15.75089 -15.72524 -15.17666 -15.12056 -14.56909
-14.34442 -14.29987 -14.15862 -13.66856 -13.47697 -13.44176 -13.23290 -12.90789
-12.74834 -12.62577 -12.49172 -12.23335 -11.95043 -11.83560 -11.39597 -11.16923
-10.69842 -9.96241 -9.83589 -9.29514 -9.13003 -8.25873 -6.36843 0.01495
0.50040 1.04903 1.37963 1.41095 1.49268 1.85897 2.36756 2.71421
3.06669 3.07224 3.50755 3.85571 3.90865 4.11534 4.23803 4.29764
4.37091 4.52893 4.54129 4.63039 4.78117 4.81883 4.92929 5.00185
5.13826 5.16897 5.21257 5.24309 5.34088 5.41361 5.56876 5.71171
5.99234 6.06546 6.40691 6.66128 6.83570 7.33792 8.85179
Molecular weight = 267.10amu
Principal moments of inertia in cm(-1)
A = 0.033100 B = 0.003634 C = 0.003424
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 845.730648 B = 7702.918981 C = 8176.466871
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.110 3.890
3 H 0.077 0.923
4 N -0.685 5.685
5 C 0.213 3.787
6 C -0.541 4.541
7 H 0.059 0.941
8 C 0.005 3.995
9 N -0.931 5.931
10 Si 0.970 3.030
11 H -0.271 1.271
12 H -0.279 1.279
13 H -0.268 1.268
14 C -0.035 4.035
15 C -0.142 4.142
16 C -0.029 4.029
17 C -0.477 4.477
18 S 1.404 4.596
19 C -0.496 4.496
20 O -0.932 6.932
21 C -0.080 4.080
22 C -0.132 4.132
23 H 0.045 0.955
24 H 0.081 0.919
25 H 0.056 0.944
26 H 0.332 0.668
27 H 0.001 0.999
28 H -0.032 1.032
29 H 0.266 0.734
30 H 0.148 0.852
31 H 0.194 0.806
32 H 0.143 0.857
33 H 0.122 0.878
34 H 0.057 0.943
35 H 0.103 0.897
36 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.061 -1.389 -24.772 24.834
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.000 4.000
3 H 0.095 0.905
4 N -0.315 5.315
5 C 0.086 3.914
6 C -0.579 4.579
7 H 0.077 0.923
8 C -0.194 4.194
9 N -0.571 5.571
10 Si 0.794 3.206
11 H -0.196 1.196
12 H -0.204 1.204
13 H -0.193 1.193
14 C -0.036 4.036
15 C -0.161 4.161
16 C -0.048 4.048
17 C -0.573 4.573
18 S 1.602 4.398
19 C -0.654 4.654
20 O -0.928 6.928
21 C -0.100 4.100
22 C -0.152 4.152
23 H 0.064 0.936
24 H 0.100 0.900
25 H 0.075 0.925
26 H 0.150 0.850
27 H 0.019 0.981
28 H -0.014 1.014
29 H 0.075 0.925
30 H 0.166 0.834
31 H 0.211 0.789
32 H 0.161 0.839
33 H 0.140 0.860
34 H 0.076 0.924
35 H 0.121 0.879
36 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 0.518 -1.459 -24.997 25.045
hybrid contribution -2.474 -1.496 2.950 4.130
sum -1.956 -2.955 -22.047 22.330
Atomic orbital electron populations
1.22343 0.95313 1.02209 1.02413 1.20601 0.93644 0.97079 0.88675
0.90527 1.60648 1.56405 1.10063 1.04342 1.19185 0.93246 0.91420
0.87576 1.21506 1.44276 0.97120 0.94978 0.92308 1.25890 0.95480
0.95808 1.02173 1.70060 1.49405 1.10515 1.27070 0.85430 0.79025
0.78286 0.77820 1.19593 1.20419 1.19278 1.20148 0.95074 0.93642
0.94715 1.21526 1.00068 1.01211 0.93335 1.21357 0.93159 0.91564
0.98671 1.27886 1.12643 1.03346 1.13415 1.68401 0.90606 0.92918
0.87879 1.27753 1.16758 1.09938 1.10930 1.92978 1.75009 1.46114
1.78744 1.21037 0.95848 0.99129 0.93954 1.20979 1.01638 0.94796
0.97775 0.93638 0.90018 0.92451 0.85012 0.98093 1.01388 0.92492
0.83381 0.78903 0.83869 0.85976 0.92367 0.87931 0.87410
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.04 9.14 71.98 0.66 -4.38 16
2 C 0.11 3.89 2.79 44.17 0.12 4.01 16
3 H 0.08 2.78 7.66 -2.38 -0.02 2.76 16
4 N -0.68 -30.28 5.69 -499.47 -2.84 -33.12 16
5 C 0.21 11.53 5.24 85.55 0.45 11.98 16
6 C -0.54 -31.56 9.32 25.60 0.24 -31.32 16
7 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16
8 C 0.01 0.30 5.46 84.66 0.46 0.76 16
9 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16
10 Si 0.97 45.14 29.54 68.60 2.03 47.17 16
11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16
12 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16
13 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16
14 C -0.03 -1.08 4.96 -19.87 -0.10 -1.18 16
15 C -0.14 -3.27 9.67 22.27 0.22 -3.05 16
16 C -0.03 -0.48 9.75 22.27 0.22 -0.26 16
17 C -0.48 -10.33 5.61 22.27 0.12 -10.21 16
18 S 1.40 20.59 14.19 -56.49 -0.80 19.79 16
19 C -0.50 -5.30 10.70 113.37 1.21 -4.09 16
20 O -0.93 -28.70 16.90 -148.98 -2.52 -31.22 16
21 C -0.08 -2.45 9.44 22.27 0.21 -2.24 16
22 C -0.13 -4.34 9.32 22.27 0.21 -4.13 16
23 H 0.04 1.55 7.45 -2.39 -0.02 1.54 16
24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16
25 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16
26 H 0.33 14.26 7.81 -89.69 -0.70 13.56 16
27 H 0.00 0.06 8.06 -2.39 -0.02 0.04 16
28 H -0.03 -1.80 7.44 -2.38 -0.02 -1.82 16
29 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16
30 H 0.15 2.69 8.04 -2.91 -0.02 2.67 16
31 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16
32 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16
33 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16
34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
35 H 0.10 3.40 7.46 -2.91 -0.02 3.38 16
36 H 0.11 3.72 7.25 -2.91 -0.02 3.70 16
Total: -1.00 -82.42 318.36 0.54 -81.88
By element:
Atomic # 1 Polarization: 15.40 SS G_CDS: 0.37 Total: 15.76 kcal
Atomic # 6 Polarization: -48.15 SS G_CDS: 4.02 Total: -44.13 kcal
Atomic # 7 Polarization: -86.70 SS G_CDS: -2.56 Total: -89.25 kcal
Atomic # 8 Polarization: -28.70 SS G_CDS: -2.52 Total: -31.22 kcal
Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal
Atomic # 16 Polarization: 20.59 SS G_CDS: -0.80 Total: 19.79 kcal
Total: -82.42 0.54 -81.88 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591757234.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.881 kcal
(2) G-P(sol) polarization free energy of solvation -82.416 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.536 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.880 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.000 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds