Wall clock time and date at job start Mon Mar 30 2020 00:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46542 * 2 1 4 4 N 1.46893 * 109.47367 * 120.00108 * 2 1 3 5 5 C 1.46899 * 111.00540 * 275.00110 * 4 2 1 6 6 C 1.50690 * 109.47471 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99964 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00154 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99918 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00302 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46828 * 59.99733 * 10 8 6 12 12 H 1.48496 * 109.47213 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47028 * 300.00170 * 10 8 6 14 14 C 1.50701 * 109.47023 * 240.00546 * 2 1 3 15 15 C 1.38235 * 119.99808 * 99.99679 * 14 2 1 16 16 C 1.38243 * 119.99602 * 179.97438 * 15 14 2 17 17 C 1.38232 * 120.00069 * 0.09581 * 16 15 14 18 18 S 1.76204 * 119.99908 * 179.97438 * 17 16 15 19 19 C 1.81399 * 102.99807 * 269.91087 * 18 17 16 20 20 O 1.42097 * 102.99886 * 156.05655 * 18 17 16 21 21 C 1.38234 * 119.99866 * 359.86117 * 17 16 15 22 22 C 1.38230 * 119.99865 * 279.97425 * 14 2 1 23 23 H 1.08997 * 109.46859 * 299.99305 * 1 2 3 24 24 H 1.08999 * 109.47404 * 59.99936 * 1 2 3 25 25 H 1.09000 * 109.46480 * 179.97438 * 1 2 3 26 26 H 1.00901 * 111.00265 * 38.95605 * 4 2 1 27 27 H 1.09003 * 109.46735 * 300.00297 * 5 4 2 28 28 H 1.09006 * 109.46661 * 59.99712 * 5 4 2 29 29 H 0.97001 * 120.00378 * 180.02562 * 9 8 6 30 30 H 1.08000 * 120.00616 * 359.70324 * 15 14 2 31 31 H 1.08001 * 119.99556 * 179.97438 * 16 15 14 32 32 H 1.08994 * 109.47731 * 59.99888 * 19 18 17 33 33 H 1.09003 * 109.47021 * 180.02562 * 19 18 17 34 34 H 1.09004 * 109.47166 * 299.99904 * 19 18 17 35 35 H 1.08000 * 119.99729 * 180.02562 * 21 17 16 36 36 H 1.08001 * 120.00371 * 0.02562 * 22 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0826 0.2225 2.3469 6 6 2.5887 -0.5216 3.5556 7 1 2.8383 -1.5696 3.4791 8 6 2.7321 0.1351 4.7594 9 7 2.4267 1.4109 4.8529 10 14 3.3587 -0.7874 6.2579 11 1 4.7151 -1.3233 5.9778 12 1 3.4212 0.1373 7.4182 13 1 2.4376 -1.9099 6.5692 14 6 2.0323 -0.7103 -1.2305 15 6 2.4586 0.0197 -2.3243 16 6 2.9199 -0.6319 -3.4529 17 6 2.9530 -2.0134 -3.4884 18 16 3.5403 -2.8439 -4.9272 19 6 2.0351 -3.0611 -5.9159 20 8 3.9599 -4.1034 -4.4203 21 6 2.5275 -2.7433 -2.3942 22 6 2.0672 -2.0917 -1.2653 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.4497 -1.4979 1.4100 27 1 2.7589 1.0461 2.1182 28 1 1.0871 0.6162 2.5525 29 1 2.5279 1.8731 5.6996 30 1 2.4273 1.0989 -2.2988 31 1 3.2526 -0.0616 -4.3076 32 1 1.6047 -2.0855 -6.1417 33 1 2.2819 -3.5737 -6.8457 34 1 1.3140 -3.6550 -5.3543 35 1 2.5537 -3.8226 -2.4218 36 1 1.7341 -2.6620 -0.4108 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591757234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:35 Heat of formation + Delta-G solvation = -44.999558 kcal Electronic energy + Delta-G solvation = -17468.005522 eV Core-core repulsion = 14656.270291 eV Total energy + Delta-G solvation = -2811.735230 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42885 -37.64980 -36.82456 -34.98452 -32.58142 -31.84409 -30.22571 -29.50373 -27.99236 -24.98052 -24.08694 -23.19251 -21.50652 -19.06244 -18.66704 -17.55900 -16.94995 -16.36948 -16.31901 -15.75089 -15.72524 -15.17666 -15.12056 -14.56909 -14.34442 -14.29987 -14.15862 -13.66856 -13.47697 -13.44176 -13.23290 -12.90789 -12.74834 -12.62577 -12.49172 -12.23335 -11.95043 -11.83560 -11.39597 -11.16923 -10.69842 -9.96241 -9.83589 -9.29514 -9.13003 -8.25873 -6.36843 0.01495 0.50040 1.04903 1.37963 1.41095 1.49268 1.85897 2.36756 2.71421 3.06669 3.07224 3.50755 3.85571 3.90865 4.11534 4.23803 4.29764 4.37091 4.52893 4.54129 4.63039 4.78117 4.81883 4.92929 5.00185 5.13826 5.16897 5.21257 5.24309 5.34088 5.41361 5.56876 5.71171 5.99234 6.06546 6.40691 6.66128 6.83570 7.33792 8.85179 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.033100 B = 0.003634 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.730648 B = 7702.918981 C = 8176.466871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 H 0.077 0.923 4 N -0.685 5.685 5 C 0.213 3.787 6 C -0.541 4.541 7 H 0.059 0.941 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.970 3.030 11 H -0.271 1.271 12 H -0.279 1.279 13 H -0.268 1.268 14 C -0.035 4.035 15 C -0.142 4.142 16 C -0.029 4.029 17 C -0.477 4.477 18 S 1.404 4.596 19 C -0.496 4.496 20 O -0.932 6.932 21 C -0.080 4.080 22 C -0.132 4.132 23 H 0.045 0.955 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.332 0.668 27 H 0.001 0.999 28 H -0.032 1.032 29 H 0.266 0.734 30 H 0.148 0.852 31 H 0.194 0.806 32 H 0.143 0.857 33 H 0.122 0.878 34 H 0.057 0.943 35 H 0.103 0.897 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 -1.389 -24.772 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.000 4.000 3 H 0.095 0.905 4 N -0.315 5.315 5 C 0.086 3.914 6 C -0.579 4.579 7 H 0.077 0.923 8 C -0.194 4.194 9 N -0.571 5.571 10 Si 0.794 3.206 11 H -0.196 1.196 12 H -0.204 1.204 13 H -0.193 1.193 14 C -0.036 4.036 15 C -0.161 4.161 16 C -0.048 4.048 17 C -0.573 4.573 18 S 1.602 4.398 19 C -0.654 4.654 20 O -0.928 6.928 21 C -0.100 4.100 22 C -0.152 4.152 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.150 0.850 27 H 0.019 0.981 28 H -0.014 1.014 29 H 0.075 0.925 30 H 0.166 0.834 31 H 0.211 0.789 32 H 0.161 0.839 33 H 0.140 0.860 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.518 -1.459 -24.997 25.045 hybrid contribution -2.474 -1.496 2.950 4.130 sum -1.956 -2.955 -22.047 22.330 Atomic orbital electron populations 1.22343 0.95313 1.02209 1.02413 1.20601 0.93644 0.97079 0.88675 0.90527 1.60648 1.56405 1.10063 1.04342 1.19185 0.93246 0.91420 0.87576 1.21506 1.44276 0.97120 0.94978 0.92308 1.25890 0.95480 0.95808 1.02173 1.70060 1.49405 1.10515 1.27070 0.85430 0.79025 0.78286 0.77820 1.19593 1.20419 1.19278 1.20148 0.95074 0.93642 0.94715 1.21526 1.00068 1.01211 0.93335 1.21357 0.93159 0.91564 0.98671 1.27886 1.12643 1.03346 1.13415 1.68401 0.90606 0.92918 0.87879 1.27753 1.16758 1.09938 1.10930 1.92978 1.75009 1.46114 1.78744 1.21037 0.95848 0.99129 0.93954 1.20979 1.01638 0.94796 0.97775 0.93638 0.90018 0.92451 0.85012 0.98093 1.01388 0.92492 0.83381 0.78903 0.83869 0.85976 0.92367 0.87931 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 9.14 71.98 0.66 -4.38 16 2 C 0.11 3.89 2.79 44.17 0.12 4.01 16 3 H 0.08 2.78 7.66 -2.38 -0.02 2.76 16 4 N -0.68 -30.28 5.69 -499.47 -2.84 -33.12 16 5 C 0.21 11.53 5.24 85.55 0.45 11.98 16 6 C -0.54 -31.56 9.32 25.60 0.24 -31.32 16 7 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 8 C 0.01 0.30 5.46 84.66 0.46 0.76 16 9 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 10 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 14 C -0.03 -1.08 4.96 -19.87 -0.10 -1.18 16 15 C -0.14 -3.27 9.67 22.27 0.22 -3.05 16 16 C -0.03 -0.48 9.75 22.27 0.22 -0.26 16 17 C -0.48 -10.33 5.61 22.27 0.12 -10.21 16 18 S 1.40 20.59 14.19 -56.49 -0.80 19.79 16 19 C -0.50 -5.30 10.70 113.37 1.21 -4.09 16 20 O -0.93 -28.70 16.90 -148.98 -2.52 -31.22 16 21 C -0.08 -2.45 9.44 22.27 0.21 -2.24 16 22 C -0.13 -4.34 9.32 22.27 0.21 -4.13 16 23 H 0.04 1.55 7.45 -2.39 -0.02 1.54 16 24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16 26 H 0.33 14.26 7.81 -89.69 -0.70 13.56 16 27 H 0.00 0.06 8.06 -2.39 -0.02 0.04 16 28 H -0.03 -1.80 7.44 -2.38 -0.02 -1.82 16 29 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.15 2.69 8.04 -2.91 -0.02 2.67 16 31 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16 32 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 3.40 7.46 -2.91 -0.02 3.38 16 36 H 0.11 3.72 7.25 -2.91 -0.02 3.70 16 Total: -1.00 -82.42 318.36 0.54 -81.88 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.37 Total: 15.76 kcal Atomic # 6 Polarization: -48.15 SS G_CDS: 4.02 Total: -44.13 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -2.56 Total: -89.25 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -2.52 Total: -31.22 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 20.59 SS G_CDS: -0.80 Total: 19.79 kcal Total: -82.42 0.54 -81.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.881 kcal (2) G-P(sol) polarization free energy of solvation -82.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds