Wall clock time and date at job start Mon Mar 30 2020 00:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00023 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99532 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00003 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47381 * 359.97438 * 10 8 6 12 12 H 1.48508 * 109.47001 * 119.99934 * 10 8 6 13 13 H 1.48497 * 109.47392 * 239.99632 * 10 8 6 14 14 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 15 15 C 1.38238 * 119.99746 * 79.73055 * 14 2 1 16 16 C 1.38232 * 119.99740 * 179.76538 * 15 14 2 17 17 C 1.38239 * 119.99792 * 0.50575 * 16 15 14 18 18 S 1.76205 * 119.99757 * 179.72440 * 17 16 15 19 19 C 1.81406 * 102.99997 * 270.02036 * 18 17 16 20 20 O 1.42100 * 103.00173 * 23.87404 * 18 17 16 21 21 C 1.38225 * 120.00154 * 359.74513 * 17 16 15 22 22 C 1.38232 * 120.00358 * 359.97438 * 21 17 16 23 23 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 24 24 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 25 25 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 26 26 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 27 27 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 28 28 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 29 29 H 0.97001 * 119.99132 * 180.02562 * 9 8 6 30 30 H 1.07997 * 119.99876 * 359.97438 * 15 14 2 31 31 H 1.07997 * 119.99895 * 180.22306 * 16 15 14 32 32 H 1.08994 * 109.46815 * 60.00135 * 19 18 17 33 33 H 1.08993 * 109.46838 * 180.02562 * 19 18 17 34 34 H 1.09000 * 109.46890 * 300.00059 * 19 18 17 35 35 H 1.08006 * 120.00185 * 179.97438 * 21 17 16 36 36 H 1.08001 * 120.00568 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 1 2.8370 -1.5697 -3.4797 8 6 2.7315 0.1353 -4.7596 9 7 2.4280 1.4116 -4.8524 10 14 3.3580 -0.7872 -6.2582 11 1 3.6266 -2.2012 -5.8925 12 1 2.3341 -0.7392 -7.3328 13 1 4.6118 -0.1544 -6.7407 14 6 2.0324 -0.7104 1.2305 15 6 2.0615 -2.0920 1.2674 16 6 2.5268 -2.7436 2.3942 17 6 2.9532 -2.0137 3.4881 18 16 3.5395 -2.8444 4.9272 19 6 2.0337 -3.0606 5.9155 20 8 3.9586 -4.1042 4.4206 21 6 2.9191 -0.6323 3.4531 22 6 2.4593 0.0194 2.3241 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.4495 -1.4979 -1.4101 27 1 1.0871 0.6163 -2.5526 28 1 2.7589 1.0462 -2.1182 29 1 2.5291 1.8737 -5.6993 30 1 1.7239 -2.6622 0.4146 31 1 2.5530 -3.8229 2.4217 32 1 1.3126 -3.6542 5.3537 33 1 2.2801 -3.5724 6.8457 34 1 1.6039 -2.0847 6.1410 35 1 3.2519 -0.0621 4.3078 36 1 2.4323 1.0987 2.2969 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591757235.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:38 Heat of formation + Delta-G solvation = -45.100505 kcal Electronic energy + Delta-G solvation = -17468.108400 eV Core-core repulsion = 14656.368792 eV Total energy + Delta-G solvation = -2811.739608 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42895 -37.64957 -36.82370 -34.98518 -32.58172 -31.84517 -30.22488 -29.50349 -27.99366 -24.98169 -24.08750 -23.19451 -21.50672 -19.06282 -18.67133 -17.56047 -16.95113 -16.36866 -16.31479 -15.75073 -15.72347 -15.17668 -15.12175 -14.56879 -14.35604 -14.29853 -14.15860 -13.67354 -13.47375 -13.44121 -13.23694 -12.90714 -12.74476 -12.64313 -12.48544 -12.23176 -11.95440 -11.83501 -11.37191 -11.16439 -10.70878 -9.96350 -9.83654 -9.29455 -9.12923 -8.26306 -6.36948 0.01448 0.50024 1.04941 1.37452 1.38516 1.52116 1.85914 2.36652 2.71337 3.06734 3.06950 3.50750 3.85549 3.90866 4.11518 4.23767 4.29770 4.37254 4.52865 4.54079 4.63057 4.78088 4.81891 4.92872 5.00239 5.13867 5.16894 5.21291 5.24311 5.34096 5.41366 5.57224 5.71165 5.99171 6.06529 6.40551 6.66237 6.83805 7.33755 8.85154 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.033100 B = 0.003634 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.722928 B = 7703.546163 C = 8176.600405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 H 0.077 0.923 4 N -0.685 5.685 5 C 0.213 3.787 6 C -0.538 4.538 7 H 0.058 0.942 8 C 0.004 3.996 9 N -0.930 5.930 10 Si 0.971 3.029 11 H -0.268 1.268 12 H -0.275 1.275 13 H -0.276 1.276 14 C -0.035 4.035 15 C -0.132 4.132 16 C -0.080 4.080 17 C -0.477 4.477 18 S 1.404 4.596 19 C -0.496 4.496 20 O -0.932 6.932 21 C -0.029 4.029 22 C -0.142 4.142 23 H 0.081 0.919 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.332 0.668 27 H -0.031 1.031 28 H 0.001 0.999 29 H 0.266 0.734 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.194 0.806 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 -1.376 24.789 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.000 4.000 3 H 0.095 0.905 4 N -0.315 5.315 5 C 0.085 3.915 6 C -0.576 4.576 7 H 0.077 0.923 8 C -0.194 4.194 9 N -0.570 5.570 10 Si 0.795 3.205 11 H -0.192 1.192 12 H -0.201 1.201 13 H -0.202 1.202 14 C -0.036 4.036 15 C -0.152 4.152 16 C -0.100 4.100 17 C -0.573 4.573 18 S 1.602 4.398 19 C -0.654 4.654 20 O -0.928 6.928 21 C -0.047 4.047 22 C -0.161 4.161 23 H 0.100 0.900 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.150 0.850 27 H -0.014 1.014 28 H 0.019 0.981 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.161 0.839 35 H 0.211 0.789 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.520 -1.454 25.019 25.066 hybrid contribution -2.477 -1.479 -2.961 4.134 sum -1.957 -2.932 22.057 22.337 Atomic orbital electron populations 1.22343 0.95309 1.02210 1.02415 1.20604 0.93645 0.97078 0.88673 0.90522 1.60654 1.56405 1.10062 1.04343 1.19196 0.93272 0.91428 0.87595 1.21560 1.44072 0.97068 0.94939 0.92345 1.25894 0.95517 0.95813 1.02195 1.70079 1.49560 1.10469 1.26941 0.85319 0.78066 0.78706 0.78404 1.19184 1.20060 1.20200 1.20151 0.95075 0.93641 0.94701 1.20981 1.01629 0.94792 0.97800 1.21036 0.95820 0.99129 0.93976 1.27885 1.12664 1.03347 1.13397 1.68404 0.90618 0.92905 0.87885 1.27751 1.16762 1.09944 1.10920 1.92979 1.75025 1.46083 1.78755 1.21354 0.93141 0.91563 0.98684 1.21523 1.00090 1.01213 0.93318 0.90015 0.93639 0.92447 0.85014 1.01371 0.98064 0.92517 0.87419 0.87933 0.92366 0.85973 0.83872 0.78901 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 9.14 71.98 0.66 -4.38 16 2 C 0.11 3.88 2.79 44.17 0.12 4.01 16 3 H 0.08 2.78 7.66 -2.39 -0.02 2.76 16 4 N -0.68 -30.28 5.70 -499.44 -2.85 -33.13 16 5 C 0.21 11.48 5.24 85.56 0.45 11.93 16 6 C -0.54 -31.41 9.32 25.60 0.24 -31.17 16 7 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 8 C 0.00 0.25 5.46 84.66 0.46 0.71 16 9 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 10 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 C -0.03 -1.08 4.95 -19.86 -0.10 -1.17 16 15 C -0.13 -4.35 9.32 22.27 0.21 -4.14 16 16 C -0.08 -2.45 9.44 22.27 0.21 -2.24 16 17 C -0.48 -10.33 5.61 22.27 0.12 -10.21 16 18 S 1.40 20.58 14.19 -56.49 -0.80 19.78 16 19 C -0.50 -5.30 10.70 113.37 1.21 -4.09 16 20 O -0.93 -28.70 16.90 -148.98 -2.52 -31.22 16 21 C -0.03 -0.48 9.75 22.27 0.22 -0.26 16 22 C -0.14 -3.27 9.67 22.27 0.22 -3.05 16 23 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.04 1.55 7.45 -2.39 -0.02 1.53 16 25 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16 26 H 0.33 14.27 7.81 -89.69 -0.70 13.56 16 27 H -0.03 -1.79 7.44 -2.39 -0.02 -1.80 16 28 H 0.00 0.07 8.05 -2.39 -0.02 0.05 16 29 H 0.27 15.03 8.31 -92.71 -0.77 14.25 16 30 H 0.11 3.72 7.26 -2.91 -0.02 3.70 16 31 H 0.10 3.40 7.46 -2.91 -0.02 3.38 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.12 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.19 0.80 8.06 -2.91 -0.02 0.77 16 36 H 0.15 2.69 8.04 -2.91 -0.02 2.67 16 Total: -1.00 -82.46 318.37 0.53 -81.93 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.37 Total: 15.52 kcal Atomic # 6 Polarization: -48.08 SS G_CDS: 4.02 Total: -44.06 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -2.56 Total: -89.17 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -2.52 Total: -31.22 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 20.58 SS G_CDS: -0.80 Total: 19.78 kcal Total: -82.46 0.53 -81.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757235.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.827 kcal (2) G-P(sol) polarization free energy of solvation -82.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds