Wall clock time and date at job start Mon Mar 30 2020 00:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00023 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00211 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99630 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46926 * 90.00445 * 10 8 6 12 12 H 1.48506 * 109.46987 * 209.99731 * 10 8 6 13 13 H 1.48494 * 109.47527 * 330.00217 * 10 8 6 14 14 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 15 15 C 1.38238 * 119.99746 * 79.73055 * 14 2 1 16 16 C 1.38231 * 119.99770 * 179.74346 * 15 14 2 17 17 C 1.38240 * 119.99761 * 0.54959 * 16 15 14 18 18 S 1.76205 * 119.99895 * 179.72465 * 17 16 15 19 19 C 1.81405 * 102.99707 * 269.97826 * 18 17 16 20 20 O 1.42095 * 102.99745 * 156.12519 * 18 17 16 21 21 C 1.38225 * 120.00129 * 359.70129 * 17 16 15 22 22 C 1.38232 * 120.00358 * 0.02562 * 21 17 16 23 23 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 24 24 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 25 25 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 26 26 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 27 27 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 28 28 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 29 29 H 0.96999 * 120.00132 * 179.97438 * 9 8 6 30 30 H 1.07997 * 119.99876 * 359.97438 * 15 14 2 31 31 H 1.07996 * 120.00274 * 180.27268 * 16 15 14 32 32 H 1.08994 * 109.47463 * 60.00337 * 19 18 17 33 33 H 1.09005 * 109.46632 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.47030 * 299.99583 * 19 18 17 35 35 H 1.08006 * 120.00185 * 179.97438 * 21 17 16 36 36 H 1.08001 * 120.00568 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 1 2.8370 -1.5697 -3.4797 8 6 2.7315 0.1353 -4.7596 9 7 3.1726 -0.5141 -5.8147 10 14 2.3004 1.9481 -4.8915 11 1 3.5012 2.7661 -4.5846 12 1 1.8366 2.2476 -6.2701 13 1 1.2207 2.2718 -3.9247 14 6 2.0324 -0.7104 1.2305 15 6 2.0615 -2.0920 1.2674 16 6 2.5272 -2.7436 2.3940 17 6 2.9532 -2.0137 3.4881 18 16 3.5400 -2.8444 4.9270 19 6 2.0346 -3.0606 5.9158 20 8 4.3739 -1.8709 5.5402 21 6 2.9191 -0.6323 3.4531 22 6 2.4587 0.0194 2.3243 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.4495 -1.4979 -1.4101 27 1 1.0871 0.6163 -2.5526 28 1 2.7589 1.0462 -2.1182 29 1 3.2737 -0.0519 -6.6615 30 1 1.7239 -2.6622 0.4146 31 1 2.5542 -3.8229 2.4213 32 1 1.3133 -3.6542 5.3544 33 1 2.2814 -3.5724 6.8460 34 1 1.6049 -2.0846 6.1415 35 1 3.2515 -0.0621 4.3080 36 1 2.4317 1.0987 2.2971 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591757236.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:41 Heat of formation + Delta-G solvation = -14.159892 kcal Electronic energy + Delta-G solvation = -17499.966424 eV Core-core repulsion = 14689.568501 eV Total energy + Delta-G solvation = -2810.397922 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.37900 -36.30937 -35.81447 -32.92775 -31.28214 -30.83681 -29.22617 -28.78804 -26.50913 -23.70093 -22.75954 -21.27352 -20.31632 -18.17659 -17.07052 -16.57269 -15.65394 -15.22358 -14.94206 -14.68688 -14.15862 -13.97079 -13.90265 -13.71145 -13.32875 -13.17192 -12.86305 -12.67613 -12.47717 -12.07998 -11.94745 -11.72402 -11.55726 -11.17410 -10.78516 -10.70618 -10.51157 -10.27344 -9.88596 -9.35838 -8.95604 -8.84540 -8.63473 -8.44197 -7.57562 -6.10037 -4.08327 0.94621 1.49050 1.81248 2.59055 3.25580 3.32936 3.33984 3.64680 3.88309 4.37849 4.73804 4.91296 4.94368 5.02597 5.06118 5.13317 5.23259 5.37519 5.46893 5.52035 5.61478 5.71922 5.87573 5.93082 5.98583 6.13896 6.22773 6.31984 6.41786 6.70767 6.75860 6.95963 7.03492 7.53485 7.80657 8.22348 8.58586 8.97601 9.51517 11.03162 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.038839 B = 0.003624 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.747952 B = 7723.959371 C = 7868.451785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 H 0.082 0.918 4 N -0.670 5.670 5 C 0.165 3.835 6 C -0.517 4.517 7 H 0.080 0.920 8 C 0.069 3.931 9 N -0.899 5.899 10 Si 0.877 3.123 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.268 1.268 14 C -0.015 4.015 15 C -0.114 4.114 16 C -0.046 4.046 17 C -0.472 4.472 18 S 1.331 4.669 19 C -0.499 4.499 20 O -0.863 6.863 21 C -0.055 4.055 22 C -0.136 4.136 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.337 0.663 27 H -0.014 1.014 28 H 0.022 0.978 29 H 0.264 0.736 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 -6.775 20.323 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.003 4.003 3 H 0.100 0.900 4 N -0.300 5.300 5 C 0.037 3.963 6 C -0.555 4.555 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.538 5.538 10 Si 0.704 3.296 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.016 4.016 15 C -0.133 4.133 16 C -0.065 4.065 17 C -0.570 4.570 18 S 1.529 4.471 19 C -0.655 4.655 20 O -0.858 6.858 21 C -0.074 4.074 22 C -0.156 4.156 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.155 0.845 27 H 0.004 0.996 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.311 -6.929 20.514 21.904 hybrid contribution -2.210 3.231 -0.149 3.917 sum -5.520 -3.699 20.365 21.422 Atomic orbital electron populations 1.22473 0.96620 1.02231 1.02035 1.20602 0.92437 0.97652 0.89641 0.90008 1.60597 1.55623 1.10073 1.03708 1.20037 0.94703 0.92733 0.88815 1.21030 1.43807 0.98887 0.91788 0.90228 1.24896 0.94728 0.97976 0.95651 1.69890 1.46383 1.36563 1.00929 0.86838 0.79271 0.86061 0.77424 1.20130 1.21166 1.19302 1.20200 0.93215 0.94182 0.93977 1.21105 1.00082 0.94192 0.97934 1.20802 0.94566 0.99379 0.91773 1.27391 1.14170 1.01719 1.13674 1.69367 0.83009 1.10176 0.84567 1.27785 1.18820 1.07037 1.11908 1.93088 1.55157 1.62761 1.74832 1.20959 0.94816 0.93673 0.97930 1.21092 1.01017 0.99879 0.93590 0.92735 0.91868 0.92293 0.84466 0.99589 0.96023 0.92591 0.85149 0.84879 0.87165 0.87952 0.90233 0.86114 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.14 37.16 0.34 -2.11 16 2 C 0.11 1.75 2.79 -68.86 -0.19 1.56 16 3 H 0.08 1.38 7.66 -51.93 -0.40 0.98 16 4 N -0.67 -13.22 5.70 -109.21 -0.62 -13.84 16 5 C 0.16 3.89 4.31 -4.98 -0.02 3.87 16 6 C -0.52 -14.54 9.87 -34.44 -0.34 -14.88 16 7 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 10 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 14 C -0.01 -0.22 4.95 -104.62 -0.52 -0.74 16 15 C -0.11 -1.51 9.32 -39.58 -0.37 -1.88 16 16 C -0.05 -0.49 9.75 -39.58 -0.39 -0.87 16 17 C -0.47 -5.47 5.61 -39.59 -0.22 -5.69 16 18 S 1.33 11.21 14.19 -107.50 -1.53 9.69 16 19 C -0.50 -3.47 10.70 101.05 1.08 -2.39 16 20 O -0.86 -13.06 16.90 -35.23 -0.60 -13.66 16 21 C -0.05 -0.76 9.44 -39.59 -0.37 -1.14 16 22 C -0.14 -1.96 9.67 -39.58 -0.38 -2.34 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.95 7.45 -51.93 -0.39 0.56 16 25 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 26 H 0.34 6.29 7.81 -39.29 -0.31 5.98 16 27 H -0.01 -0.32 6.49 -51.93 -0.34 -0.65 16 28 H 0.02 0.53 7.48 -51.93 -0.39 0.14 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.13 1.65 7.26 -52.49 -0.38 1.27 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 35 H 0.12 1.73 7.46 -52.48 -0.39 1.34 16 36 H 0.12 1.57 8.04 -52.49 -0.42 1.15 16 LS Contribution 314.77 15.07 4.74 4.74 Total: -1.00 -36.31 314.77 -8.51 -44.83 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.14 Total: 2.83 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -1.48 Total: -24.71 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.15 Total: -40.44 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.60 Total: -13.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 16 Polarization: 11.21 SS G_CDS: -1.53 Total: 9.69 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.31 -8.51 -44.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757236.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.667 kcal (2) G-P(sol) polarization free energy of solvation -36.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds