Wall clock time and date at job start Mon Mar 30 2020 00:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00023 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00211 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99630 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46926 * 90.00445 * 10 8 6 12 12 H 1.48506 * 109.46987 * 209.99731 * 10 8 6 13 13 H 1.48494 * 109.47527 * 330.00217 * 10 8 6 14 14 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 15 15 C 1.38238 * 119.99746 * 79.73055 * 14 2 1 16 16 C 1.38231 * 119.99770 * 179.74346 * 15 14 2 17 17 C 1.38240 * 119.99761 * 0.54959 * 16 15 14 18 18 S 1.76205 * 119.99895 * 179.72465 * 17 16 15 19 19 C 1.81405 * 102.99707 * 269.97826 * 18 17 16 20 20 O 1.42095 * 102.99745 * 156.12519 * 18 17 16 21 21 C 1.38225 * 120.00129 * 359.70129 * 17 16 15 22 22 C 1.38232 * 120.00358 * 0.02562 * 21 17 16 23 23 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 24 24 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 25 25 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 26 26 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 27 27 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 28 28 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 29 29 H 0.96999 * 120.00132 * 179.97438 * 9 8 6 30 30 H 1.07997 * 119.99876 * 359.97438 * 15 14 2 31 31 H 1.07996 * 120.00274 * 180.27268 * 16 15 14 32 32 H 1.08994 * 109.47463 * 60.00337 * 19 18 17 33 33 H 1.09005 * 109.46632 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.47030 * 299.99583 * 19 18 17 35 35 H 1.08006 * 120.00185 * 179.97438 * 21 17 16 36 36 H 1.08001 * 120.00568 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 1 2.8370 -1.5697 -3.4797 8 6 2.7315 0.1353 -4.7596 9 7 3.1726 -0.5141 -5.8147 10 14 2.3004 1.9481 -4.8915 11 1 3.5012 2.7661 -4.5846 12 1 1.8366 2.2476 -6.2701 13 1 1.2207 2.2718 -3.9247 14 6 2.0324 -0.7104 1.2305 15 6 2.0615 -2.0920 1.2674 16 6 2.5272 -2.7436 2.3940 17 6 2.9532 -2.0137 3.4881 18 16 3.5400 -2.8444 4.9270 19 6 2.0346 -3.0606 5.9158 20 8 4.3739 -1.8709 5.5402 21 6 2.9191 -0.6323 3.4531 22 6 2.4587 0.0194 2.3243 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.4495 -1.4979 -1.4101 27 1 1.0871 0.6163 -2.5526 28 1 2.7589 1.0462 -2.1182 29 1 3.2737 -0.0519 -6.6615 30 1 1.7239 -2.6622 0.4146 31 1 2.5542 -3.8229 2.4213 32 1 1.3133 -3.6542 5.3544 33 1 2.2814 -3.5724 6.8460 34 1 1.6049 -2.0846 6.1415 35 1 3.2515 -0.0621 4.3080 36 1 2.4317 1.0987 2.2971 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591757236.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:41 Heat of formation + Delta-G solvation = -41.131381 kcal Electronic energy + Delta-G solvation = -17501.135995 eV Core-core repulsion = 14689.568501 eV Total energy + Delta-G solvation = -2811.567494 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44648 -37.70389 -36.82465 -34.91055 -32.79646 -31.86507 -30.34927 -29.51903 -28.28538 -24.88686 -23.93130 -22.97534 -21.56129 -19.12715 -18.92029 -17.67017 -16.94797 -16.42784 -16.11565 -15.76227 -15.69054 -15.32482 -15.15590 -14.59048 -14.57640 -14.39209 -14.12139 -13.75993 -13.53014 -13.50343 -13.34600 -12.88620 -12.72118 -12.56015 -12.47536 -12.08316 -11.85207 -11.81875 -11.51641 -11.19222 -10.82460 -9.97541 -9.84806 -9.29739 -9.13754 -8.31013 -6.34957 0.00580 0.48006 1.03226 1.33851 1.34219 1.44867 1.85172 2.32173 2.70110 3.03221 3.04963 3.41617 3.84737 3.91979 4.09242 4.19568 4.29058 4.36433 4.52563 4.53132 4.64067 4.74255 4.75712 4.83207 4.93128 5.06916 5.12426 5.13996 5.20531 5.33847 5.39430 5.51571 5.65354 5.95811 6.05320 6.53440 6.64009 6.76025 7.29803 8.85496 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.038839 B = 0.003624 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.747952 B = 7723.959371 C = 7868.451785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 H 0.071 0.929 4 N -0.677 5.677 5 C 0.176 3.824 6 C -0.526 4.526 7 H 0.042 0.958 8 C 0.010 3.990 9 N -0.945 5.945 10 Si 0.947 3.053 11 H -0.270 1.270 12 H -0.280 1.280 13 H -0.250 1.250 14 C -0.035 4.035 15 C -0.127 4.127 16 C -0.034 4.034 17 C -0.476 4.476 18 S 1.399 4.601 19 C -0.495 4.495 20 O -0.930 6.930 21 C -0.077 4.077 22 C -0.149 4.149 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.342 0.658 27 H -0.008 1.008 28 H 0.017 0.983 29 H 0.268 0.732 30 H 0.135 0.865 31 H 0.186 0.814 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.210 -7.453 21.921 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.001 4.001 3 H 0.089 0.911 4 N -0.308 5.308 5 C 0.048 3.952 6 C -0.564 4.564 7 H 0.060 0.940 8 C -0.188 4.188 9 N -0.586 5.586 10 Si 0.770 3.230 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.173 1.173 14 C -0.035 4.035 15 C -0.146 4.146 16 C -0.052 4.052 17 C -0.572 4.572 18 S 1.598 4.402 19 C -0.653 4.653 20 O -0.926 6.926 21 C -0.096 4.096 22 C -0.169 4.169 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.161 0.839 27 H 0.010 0.990 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.153 0.847 31 H 0.203 0.797 32 H 0.159 0.841 33 H 0.140 0.860 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.574 -7.601 22.117 23.830 hybrid contribution -1.827 3.267 -0.523 3.780 sum -6.401 -4.334 21.594 22.936 Atomic orbital electron populations 1.22376 0.94760 1.03102 1.02300 1.20587 0.93986 0.96894 0.88613 0.91096 1.60454 1.56889 1.09926 1.03502 1.19751 0.94345 0.92587 0.88523 1.21317 1.43560 0.97680 0.93829 0.94015 1.25826 0.94608 1.03176 0.95180 1.70038 1.48003 1.38836 1.01717 0.85724 0.79619 0.79649 0.77980 1.19552 1.20549 1.17348 1.20105 0.94904 0.95094 0.93446 1.21352 1.00465 0.93657 0.99161 1.21344 0.92054 1.01894 0.89930 1.27862 1.12921 1.01009 1.15419 1.68564 0.82128 1.07011 0.82530 1.27744 1.17886 1.06793 1.12886 1.92968 1.58929 1.64490 1.76240 1.21027 0.95967 0.95079 0.97562 1.21147 1.01609 1.00200 0.93896 0.90982 0.92959 0.91146 0.83925 0.99008 0.96500 0.92351 0.84700 0.79666 0.84082 0.85995 0.92128 0.87356 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 9.14 71.98 0.66 -3.76 16 2 C 0.11 3.48 2.79 44.17 0.12 3.61 16 3 H 0.07 2.38 7.66 -2.39 -0.02 2.36 16 4 N -0.68 -26.57 5.70 -499.44 -2.85 -29.42 16 5 C 0.18 8.30 4.31 85.56 0.37 8.67 16 6 C -0.53 -30.11 9.87 25.60 0.25 -29.86 16 7 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 8 C 0.01 0.57 5.47 84.66 0.46 1.03 16 9 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 10 Si 0.95 43.98 27.47 68.60 1.88 45.86 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 13 H -0.25 -10.77 6.54 99.48 0.65 -10.11 16 14 C -0.03 -1.01 4.95 -19.86 -0.10 -1.11 16 15 C -0.13 -3.14 9.32 22.27 0.21 -2.93 16 16 C -0.03 -0.61 9.75 22.27 0.22 -0.39 16 17 C -0.48 -10.08 5.61 22.27 0.12 -9.95 16 18 S 1.40 20.26 14.19 -56.49 -0.80 19.46 16 19 C -0.50 -5.15 10.70 113.37 1.21 -3.94 16 20 O -0.93 -27.59 16.90 -148.98 -2.52 -30.11 16 21 C -0.08 -2.14 9.44 22.27 0.21 -1.93 16 22 C -0.15 -4.28 9.67 22.27 0.22 -4.06 16 23 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 1.49 7.45 -2.39 -0.02 1.47 16 25 H 0.07 1.69 8.13 -2.39 -0.02 1.67 16 26 H 0.34 12.69 7.81 -89.69 -0.70 11.98 16 27 H -0.01 -0.35 6.49 -2.39 -0.02 -0.37 16 28 H 0.02 0.81 7.48 -2.39 -0.02 0.80 16 29 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.14 3.15 7.26 -2.91 -0.02 3.13 16 31 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 32 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.11 3.20 7.46 -2.91 -0.02 3.18 16 36 H 0.12 3.26 8.04 -2.91 -0.02 3.24 16 Total: -1.00 -81.06 314.77 0.29 -80.77 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.31 Total: 16.52 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 3.96 Total: -44.62 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -2.55 Total: -87.89 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -2.52 Total: -30.11 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Atomic # 16 Polarization: 20.26 SS G_CDS: -0.80 Total: 19.46 kcal Total: -81.06 0.29 -80.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757236.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.640 kcal (2) G-P(sol) polarization free energy of solvation -81.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds