Wall clock time and date at job start Mon Mar 30 2020 00:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46542 * 2 1 4 4 N 1.46893 * 109.47367 * 120.00108 * 2 1 3 5 5 C 1.46899 * 111.00540 * 275.00110 * 4 2 1 6 6 C 1.50690 * 109.47471 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99964 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00154 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00282 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99895 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46985 * 90.00060 * 10 8 6 12 12 H 1.48500 * 109.47075 * 209.99964 * 10 8 6 13 13 H 1.48496 * 109.46835 * 329.99990 * 10 8 6 14 14 C 1.50701 * 109.47023 * 240.00546 * 2 1 3 15 15 C 1.38235 * 119.99808 * 99.99679 * 14 2 1 16 16 C 1.38243 * 119.99602 * 179.97438 * 15 14 2 17 17 C 1.38232 * 120.00069 * 0.09581 * 16 15 14 18 18 S 1.76203 * 119.99887 * 179.97438 * 17 16 15 19 19 C 1.81402 * 102.99899 * 269.86464 * 18 17 16 20 20 O 1.42101 * 103.00078 * 23.71308 * 18 17 16 21 21 C 1.38234 * 119.99842 * 359.83724 * 17 16 15 22 22 C 1.38230 * 119.99865 * 279.97425 * 14 2 1 23 23 H 1.08997 * 109.46859 * 299.99305 * 1 2 3 24 24 H 1.08999 * 109.47404 * 59.99936 * 1 2 3 25 25 H 1.09000 * 109.46480 * 179.97438 * 1 2 3 26 26 H 1.00901 * 111.00265 * 38.95605 * 4 2 1 27 27 H 1.09003 * 109.46735 * 300.00297 * 5 4 2 28 28 H 1.09006 * 109.46661 * 59.99712 * 5 4 2 29 29 H 0.96998 * 120.00571 * 179.97438 * 9 8 6 30 30 H 1.08000 * 120.00616 * 359.70324 * 15 14 2 31 31 H 1.08001 * 119.99556 * 179.97438 * 16 15 14 32 32 H 1.09011 * 109.47292 * 59.99693 * 19 18 17 33 33 H 1.09000 * 109.47498 * 179.97438 * 19 18 17 34 34 H 1.09007 * 109.46947 * 300.00426 * 19 18 17 35 35 H 1.08008 * 119.99453 * 180.11401 * 21 17 16 36 36 H 1.08001 * 120.00350 * 359.97438 * 22 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0826 0.2225 2.3469 6 6 2.5887 -0.5216 3.5556 7 1 2.8383 -1.5696 3.4791 8 6 2.7321 0.1351 4.7594 9 7 3.1733 -0.5144 5.8144 10 14 2.2996 1.9476 4.8918 11 1 0.8701 2.0892 5.2683 12 1 3.1502 2.5849 5.9290 13 1 2.5349 2.6094 3.5834 14 6 2.0323 -0.7103 -1.2305 15 6 2.4586 0.0197 -2.3243 16 6 2.9199 -0.6319 -3.4529 17 6 2.9530 -2.0134 -3.4884 18 16 3.5403 -2.8439 -4.9272 19 6 2.0348 -3.0623 -5.9153 20 8 4.3727 -1.8696 -5.5413 21 6 2.5280 -2.7433 -2.3941 22 6 2.0672 -2.0917 -1.2653 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.4497 -1.4979 1.4100 27 1 2.7589 1.0461 2.1182 28 1 1.0871 0.6162 2.5525 29 1 3.2745 -0.0523 6.6612 30 1 2.4273 1.0989 -2.2988 31 1 3.2526 -0.0616 -4.3076 32 1 1.6037 -2.0869 -6.1412 33 1 2.2817 -3.5742 -6.8454 34 1 1.3143 -3.6566 -5.3532 35 1 2.5556 -3.8226 -2.4212 36 1 1.7349 -2.6620 -0.4105 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591757237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:44 Heat of formation + Delta-G solvation = -41.149674 kcal Electronic energy + Delta-G solvation = -17501.082093 eV Core-core repulsion = 14689.513806 eV Total energy + Delta-G solvation = -2811.568287 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.44716 -37.70522 -36.82368 -34.91038 -32.79649 -31.86474 -30.35059 -29.51891 -28.28559 -24.88664 -23.93238 -22.97532 -21.56301 -19.12756 -18.91973 -17.66791 -16.93750 -16.42651 -16.10948 -15.77256 -15.71119 -15.32419 -15.14368 -14.59548 -14.54634 -14.38961 -14.12592 -13.80539 -13.55059 -13.51276 -13.32501 -12.88362 -12.69575 -12.60382 -12.48584 -12.04148 -11.85478 -11.79746 -11.50230 -11.19292 -10.83155 -9.97689 -9.84835 -9.29951 -9.14681 -8.31032 -6.34969 0.00529 0.47916 1.03185 1.32305 1.35207 1.45473 1.85155 2.32246 2.70005 3.03064 3.04963 3.41593 3.84749 3.91945 4.09159 4.19634 4.29032 4.36402 4.52533 4.53118 4.64023 4.74322 4.75067 4.83807 4.93195 5.06604 5.12167 5.13978 5.20490 5.33774 5.39289 5.52197 5.65322 5.95824 6.05269 6.53601 6.64200 6.75971 7.29827 8.85510 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.038847 B = 0.003624 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.610075 B = 7723.683513 C = 7868.536668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 H 0.070 0.930 4 N -0.677 5.677 5 C 0.177 3.823 6 C -0.526 4.526 7 H 0.042 0.958 8 C 0.010 3.990 9 N -0.945 5.945 10 Si 0.947 3.053 11 H -0.264 1.264 12 H -0.282 1.282 13 H -0.254 1.254 14 C -0.035 4.035 15 C -0.149 4.149 16 C -0.077 4.077 17 C -0.476 4.476 18 S 1.399 4.601 19 C -0.495 4.495 20 O -0.930 6.930 21 C -0.034 4.034 22 C -0.127 4.127 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.342 0.658 27 H 0.018 0.982 28 H -0.009 1.009 29 H 0.268 0.732 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.122 0.878 34 H 0.141 0.859 35 H 0.186 0.814 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.191 -7.462 -21.898 23.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.001 4.001 3 H 0.088 0.912 4 N -0.308 5.308 5 C 0.048 3.952 6 C -0.564 4.564 7 H 0.060 0.940 8 C -0.188 4.188 9 N -0.586 5.586 10 Si 0.771 3.229 11 H -0.189 1.189 12 H -0.208 1.208 13 H -0.178 1.178 14 C -0.036 4.036 15 C -0.169 4.169 16 C -0.096 4.096 17 C -0.572 4.572 18 S 1.598 4.402 19 C -0.653 4.653 20 O -0.926 6.926 21 C -0.052 4.052 22 C -0.146 4.146 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.161 0.839 27 H 0.036 0.964 28 H 0.008 0.992 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.140 0.860 34 H 0.159 0.841 35 H 0.203 0.797 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.550 -7.607 -22.095 23.807 hybrid contribution -1.862 3.261 0.525 3.792 sum -6.411 -4.346 -21.570 22.919 Atomic orbital electron populations 1.22379 0.94709 1.03122 1.02349 1.20584 0.94023 0.96862 0.88609 0.91163 1.60457 1.56890 1.09916 1.03491 1.19751 0.94221 0.92646 0.88561 1.21314 1.43597 0.97669 0.93800 0.94008 1.25826 0.94648 1.03147 0.95164 1.70038 1.48058 1.38821 1.01678 0.85719 0.78867 0.79676 0.78677 1.18866 1.20770 1.17842 1.20103 0.94906 0.95098 0.93462 1.21148 1.01596 1.00188 0.93925 1.21030 0.95982 0.95084 0.97544 1.27862 1.12901 1.01000 1.15436 1.68566 0.82153 1.06982 0.82533 1.27746 1.17881 1.06801 1.12880 1.92969 1.59001 1.64445 1.76208 1.21346 0.92071 1.01897 0.89912 1.21351 1.00467 0.93656 0.99148 0.92851 0.90991 0.91145 0.83931 0.96403 0.99166 0.92349 0.86063 0.87355 0.92129 0.85994 0.84078 0.79655 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.40 9.14 71.98 0.66 -3.75 16 2 C 0.11 3.49 2.79 44.17 0.12 3.61 16 3 H 0.07 2.37 7.66 -2.38 -0.02 2.35 16 4 N -0.68 -26.58 5.69 -499.47 -2.84 -29.43 16 5 C 0.18 8.32 4.31 85.55 0.37 8.69 16 6 C -0.53 -30.11 9.87 25.60 0.25 -29.86 16 7 H 0.04 2.64 8.06 -2.91 -0.02 2.61 16 8 C 0.01 0.57 5.47 84.65 0.46 1.04 16 9 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 10 Si 0.95 43.99 27.47 68.60 1.88 45.88 16 11 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 14 C -0.03 -1.01 4.96 -19.87 -0.10 -1.11 16 15 C -0.15 -4.29 9.67 22.27 0.22 -4.08 16 16 C -0.08 -2.14 9.44 22.27 0.21 -1.93 16 17 C -0.48 -10.09 5.61 22.27 0.12 -9.96 16 18 S 1.40 20.27 14.19 -56.49 -0.80 19.47 16 19 C -0.50 -5.16 10.70 113.37 1.21 -3.94 16 20 O -0.93 -27.60 16.90 -148.98 -2.52 -30.12 16 21 C -0.03 -0.61 9.75 22.27 0.22 -0.39 16 22 C -0.13 -3.14 9.32 22.27 0.21 -2.93 16 23 H 0.05 1.50 7.45 -2.39 -0.02 1.48 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 25 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 26 H 0.34 12.67 7.81 -89.69 -0.70 11.97 16 27 H 0.02 0.87 7.11 -2.39 -0.02 0.86 16 28 H -0.01 -0.42 6.86 -2.38 -0.02 -0.44 16 29 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.12 3.27 8.04 -2.91 -0.02 3.25 16 31 H 0.11 3.21 7.45 -2.91 -0.02 3.19 16 32 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.14 3.16 7.25 -2.91 -0.02 3.14 16 Total: -1.00 -81.07 314.76 0.29 -80.77 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.31 Total: 16.50 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 3.96 Total: -44.62 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -2.54 Total: -87.88 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -2.52 Total: -30.12 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal Atomic # 16 Polarization: 20.27 SS G_CDS: -0.80 Total: 19.47 kcal Total: -81.07 0.29 -80.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.625 kcal (2) G-P(sol) polarization free energy of solvation -81.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds