Wall clock time and date at job start Mon Mar 30 2020 00:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47222 * 2 1 4 4 O 1.42903 * 109.47161 * 119.99504 * 2 1 3 5 5 C 1.52997 * 109.47368 * 239.99717 * 2 1 3 6 6 N 1.46505 * 109.47356 * 180.02562 * 5 2 1 7 7 C 1.40009 * 120.00055 * 180.02562 * 6 5 2 8 8 C 1.38645 * 120.09869 * 359.97438 * 7 6 5 9 9 C 1.38280 * 120.00370 * 179.70698 * 8 7 6 10 10 C 1.38269 * 120.20690 * 0.02562 * 9 8 7 11 11 C 1.38255 * 120.19318 * 0.02562 * 10 9 8 12 12 C 1.38725 * 119.99452 * 359.97438 * 11 10 9 13 13 S 1.76198 * 120.09918 * 180.02562 * 12 11 10 14 14 C 1.81394 * 103.00134 * 359.97438 * 13 12 11 15 15 C 1.50704 * 109.47088 * 180.02562 * 14 13 12 16 16 H 1.07991 * 120.00168 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99751 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99904 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00111 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47208 * 89.99803 * 19 17 15 21 21 H 1.48507 * 109.46921 * 209.99689 * 19 17 15 22 22 H 1.48495 * 109.47036 * 329.99585 * 19 17 15 23 23 H 1.09005 * 109.47222 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47280 * 300.00091 * 1 2 3 25 25 H 1.09000 * 109.47030 * 60.00680 * 1 2 3 26 26 H 0.96698 * 113.99355 * 60.00640 * 4 2 1 27 27 H 1.09000 * 109.47369 * 59.99811 * 5 2 1 28 28 H 1.08999 * 109.47367 * 299.99629 * 5 2 1 29 29 H 0.96998 * 119.99840 * 359.97438 * 6 5 2 30 30 H 1.08000 * 119.99549 * 359.72932 * 8 7 6 31 31 H 1.07999 * 119.90053 * 179.97438 * 9 8 7 32 32 H 1.07992 * 119.90447 * 179.97438 * 10 9 8 33 33 H 1.08005 * 119.99732 * 179.97438 * 11 10 9 34 34 H 1.09005 * 109.46988 * 299.99573 * 14 13 12 35 35 H 1.08999 * 109.47450 * 59.99702 * 14 13 12 36 36 H 0.96996 * 120.00239 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7213 -1.2492 6 7 3.5050 -0.7218 -1.2488 7 6 4.2051 -1.3278 -2.2991 8 6 3.5139 -1.9283 -3.3402 9 6 4.2073 -2.5209 -4.3795 10 6 5.5900 -2.5174 -4.3846 11 6 6.2876 -1.9219 -3.3502 12 6 5.6003 -1.3250 -2.3034 13 16 6.4866 -0.5646 -0.9840 14 6 8.2194 -0.8260 -1.4524 15 6 9.1194 -0.2223 -0.4051 16 1 8.6918 0.2690 0.4563 17 6 10.4889 -0.2983 -0.5462 18 7 11.2743 0.2290 0.3674 19 14 11.2286 -1.1487 -2.0358 20 1 11.4203 -0.1592 -3.1264 21 1 12.5403 -1.7399 -1.6676 22 1 10.3135 -2.2232 -2.4975 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.7210 -1.5951 1.2329 27 1 1.6767 -0.2076 -2.1392 28 1 1.6767 -1.7490 -1.2491 29 1 3.9900 -0.3017 -0.5214 30 1 2.4339 -1.9330 -3.3395 31 1 3.6673 -2.9886 -5.1894 32 1 6.1266 -2.9820 -5.1985 33 1 7.3677 -1.9213 -3.3571 34 1 8.4178 -1.8951 -1.5289 35 1 8.4114 -0.3511 -2.4145 36 1 12.2377 0.1759 0.2680 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591773990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:44 Heat of formation + Delta-G solvation = -35.692653 kcal Electronic energy + Delta-G solvation = -17483.687167 eV Core-core repulsion = 14672.355514 eV Total energy + Delta-G solvation = -2811.331653 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.22751 -37.94012 -34.89758 -33.10778 -31.64170 -30.81944 -29.35631 -28.92396 -25.72852 -22.90867 -22.82300 -21.65245 -21.01977 -17.72432 -17.00213 -16.73535 -16.24832 -16.22268 -15.46526 -14.51565 -14.42549 -14.00945 -13.83190 -13.73812 -13.28094 -13.19401 -12.98440 -12.67201 -12.47706 -12.37350 -12.14172 -11.63219 -11.17616 -10.95569 -10.85481 -10.38794 -10.34033 -10.17742 -9.95466 -9.69168 -9.19417 -9.12149 -8.73285 -7.56901 -6.40850 -6.22034 -4.25302 1.62994 1.87765 2.42899 3.19815 3.27085 3.28321 3.41662 3.62825 4.09958 4.20330 4.28042 4.46550 4.75656 4.85823 5.09310 5.12788 5.19644 5.28168 5.31673 5.41000 5.55739 5.70035 5.75194 5.82159 5.96314 6.17608 6.42632 6.51663 6.61558 6.62281 6.86738 7.07368 7.36539 7.39826 7.52913 7.92651 8.24427 8.78886 9.33162 10.89809 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.005047 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.467409 B = 5546.229499 C = 6767.474668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 H 0.105 0.895 4 O -0.555 6.555 5 C 0.097 3.903 6 N -0.740 5.740 7 C 0.226 3.774 8 C -0.189 4.189 9 C -0.092 4.092 10 C -0.160 4.160 11 C -0.093 4.093 12 C -0.144 4.144 13 S -0.135 6.135 14 C 0.033 3.967 15 C -0.518 4.518 16 H 0.085 0.915 17 C 0.083 3.917 18 N -0.889 5.889 19 Si 0.876 3.124 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.265 1.265 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.375 0.625 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.410 0.590 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.146 -4.178 -6.498 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.031 3.969 3 H 0.123 0.877 4 O -0.360 6.360 5 C -0.029 4.029 6 N -0.372 5.372 7 C 0.117 3.883 8 C -0.214 4.214 9 C -0.114 4.114 10 C -0.182 4.182 11 C -0.118 4.118 12 C -0.261 4.261 13 S 0.110 5.890 14 C -0.115 4.115 15 C -0.557 4.557 16 H 0.103 0.897 17 C -0.122 4.122 18 N -0.526 5.526 19 Si 0.702 3.298 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.189 1.189 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.223 0.777 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.247 0.753 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.203 -2.955 -5.264 21.085 hybrid contribution 0.904 -1.449 -1.849 2.517 sum -19.299 -4.403 -7.113 21.034 Atomic orbital electron populations 1.22425 0.95503 1.02816 1.03194 1.22141 0.93298 0.97311 0.84199 0.87714 1.86661 1.77150 1.29097 1.43135 1.22000 0.81930 1.00327 0.98629 1.44632 1.04216 1.63419 1.24980 1.17292 0.88987 0.93293 0.88682 1.20419 0.98797 1.06195 0.95986 1.20754 0.94067 0.99041 0.97556 1.20776 0.94148 1.03828 0.99415 1.21082 0.99804 0.97540 0.93354 1.21610 0.94587 1.08024 1.01898 1.85123 1.05740 1.70413 1.27747 1.21675 0.89098 1.00184 1.00520 1.20426 0.89980 1.38065 1.07260 0.89745 1.24828 0.96439 0.94681 0.96296 1.69855 1.04371 1.44164 1.34198 0.86830 0.79170 0.80501 0.83251 1.19745 1.20680 1.18926 0.92072 0.91267 0.91303 0.77736 0.91720 0.92351 0.75270 0.86564 0.86671 0.86679 0.85838 0.94052 0.94529 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 9.53 37.15 0.35 -0.80 16 2 C 0.09 0.81 3.67 -26.74 -0.10 0.71 16 3 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 4 O -0.56 -6.01 13.08 -35.23 -0.46 -6.47 16 5 C 0.10 0.96 4.58 -4.04 -0.02 0.94 16 6 N -0.74 -10.57 5.58 -58.44 -0.33 -10.89 16 7 C 0.23 3.67 6.66 -83.49 -0.56 3.12 16 8 C -0.19 -2.64 9.31 -39.42 -0.37 -3.00 16 9 C -0.09 -1.25 10.04 -39.55 -0.40 -1.65 16 10 C -0.16 -2.42 10.04 -39.56 -0.40 -2.82 16 11 C -0.09 -1.67 9.36 -39.39 -0.37 -2.04 16 12 C -0.14 -2.74 6.12 -38.92 -0.24 -2.97 16 13 S -0.14 -2.93 20.37 -107.50 -2.19 -5.12 16 14 C 0.03 0.81 3.16 36.01 0.11 0.92 16 15 C -0.52 -14.77 9.68 -34.44 -0.33 -15.11 16 16 H 0.08 2.62 7.96 -52.49 -0.42 2.21 16 17 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 18 N -0.89 -26.78 13.96 55.43 0.77 -26.00 16 19 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.38 2.81 9.04 45.56 0.41 3.22 16 27 H 0.06 0.59 7.96 -51.93 -0.41 0.18 16 28 H 0.06 0.53 7.95 -51.93 -0.41 0.11 16 29 H 0.41 6.51 6.89 -40.82 -0.28 6.23 16 30 H 0.12 1.31 6.74 -52.49 -0.35 0.96 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.12 2.32 5.88 -52.48 -0.31 2.01 16 34 H 0.04 1.00 6.81 -51.92 -0.35 0.65 16 35 H 0.04 0.87 7.18 -51.92 -0.37 0.50 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 312.23 15.07 4.71 4.71 Total: -1.00 -31.47 312.23 -8.78 -40.24 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -4.20 Total: 7.69 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.40 Total: -20.43 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.45 Total: -36.90 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.46 Total: -6.47 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.19 Total: -5.12 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.47 -8.78 -40.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.549 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds