Wall clock time and date at job start Mon Mar 30 2020 00:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47222 * 2 1 4 4 O 1.42903 * 109.47161 * 119.99504 * 2 1 3 5 5 C 1.52997 * 109.47368 * 239.99717 * 2 1 3 6 6 N 1.46505 * 109.47356 * 180.02562 * 5 2 1 7 7 C 1.40009 * 120.00055 * 180.02562 * 6 5 2 8 8 C 1.38645 * 120.09869 * 359.97438 * 7 6 5 9 9 C 1.38280 * 120.00370 * 179.70698 * 8 7 6 10 10 C 1.38269 * 120.20690 * 0.02562 * 9 8 7 11 11 C 1.38255 * 120.19318 * 0.02562 * 10 9 8 12 12 C 1.38725 * 119.99452 * 359.97438 * 11 10 9 13 13 S 1.76198 * 120.09918 * 180.02562 * 12 11 10 14 14 C 1.81394 * 103.00134 * 359.97438 * 13 12 11 15 15 C 1.50704 * 109.47088 * 180.02562 * 14 13 12 16 16 H 1.07991 * 120.00168 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99751 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99904 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00111 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47208 * 89.99803 * 19 17 15 21 21 H 1.48507 * 109.46921 * 209.99689 * 19 17 15 22 22 H 1.48495 * 109.47036 * 329.99585 * 19 17 15 23 23 H 1.09005 * 109.47222 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47280 * 300.00091 * 1 2 3 25 25 H 1.09000 * 109.47030 * 60.00680 * 1 2 3 26 26 H 0.96698 * 113.99355 * 60.00640 * 4 2 1 27 27 H 1.09000 * 109.47369 * 59.99811 * 5 2 1 28 28 H 1.08999 * 109.47367 * 299.99629 * 5 2 1 29 29 H 0.96998 * 119.99840 * 359.97438 * 6 5 2 30 30 H 1.08000 * 119.99549 * 359.72932 * 8 7 6 31 31 H 1.07999 * 119.90053 * 179.97438 * 9 8 7 32 32 H 1.07992 * 119.90447 * 179.97438 * 10 9 8 33 33 H 1.08005 * 119.99732 * 179.97438 * 11 10 9 34 34 H 1.09005 * 109.46988 * 299.99573 * 14 13 12 35 35 H 1.08999 * 109.47450 * 59.99702 * 14 13 12 36 36 H 0.96996 * 120.00239 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7213 -1.2492 6 7 3.5050 -0.7218 -1.2488 7 6 4.2051 -1.3278 -2.2991 8 6 3.5139 -1.9283 -3.3402 9 6 4.2073 -2.5209 -4.3795 10 6 5.5900 -2.5174 -4.3846 11 6 6.2876 -1.9219 -3.3502 12 6 5.6003 -1.3250 -2.3034 13 16 6.4866 -0.5646 -0.9840 14 6 8.2194 -0.8260 -1.4524 15 6 9.1194 -0.2223 -0.4051 16 1 8.6918 0.2690 0.4563 17 6 10.4889 -0.2983 -0.5462 18 7 11.2743 0.2290 0.3674 19 14 11.2286 -1.1487 -2.0358 20 1 11.4203 -0.1592 -3.1264 21 1 12.5403 -1.7399 -1.6676 22 1 10.3135 -2.2232 -2.4975 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.7210 -1.5951 1.2329 27 1 1.6767 -0.2076 -2.1392 28 1 1.6767 -1.7490 -1.2491 29 1 3.9900 -0.3017 -0.5214 30 1 2.4339 -1.9330 -3.3395 31 1 3.6673 -2.9886 -5.1894 32 1 6.1266 -2.9820 -5.1985 33 1 7.3677 -1.9213 -3.3571 34 1 8.4178 -1.8951 -1.5289 35 1 8.4114 -0.3511 -2.4145 36 1 12.2377 0.1759 0.2680 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591773990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:44 Heat of formation + Delta-G solvation = -57.859405 kcal Electronic energy + Delta-G solvation = -17484.648390 eV Core-core repulsion = 14672.355514 eV Total energy + Delta-G solvation = -2812.292875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.32765 -38.79851 -35.94879 -35.25745 -32.43967 -32.17818 -31.25173 -29.94379 -26.61935 -24.81824 -23.96795 -22.63322 -22.15378 -19.36820 -18.55837 -17.86504 -17.46933 -16.98650 -16.71642 -16.18862 -15.70321 -15.22661 -15.04658 -14.87557 -14.78413 -14.57263 -14.39458 -14.17030 -13.47738 -13.28312 -13.01173 -12.78075 -12.71527 -12.41519 -12.16819 -11.96485 -11.79726 -11.62531 -11.12137 -11.01601 -10.95012 -10.86409 -10.46760 -8.83560 -8.42424 -7.88397 -6.53126 0.40830 0.69673 0.83099 1.30740 1.32453 1.43071 1.84328 2.25281 2.50552 2.90053 2.92143 3.51238 3.72484 3.95735 4.08555 4.20612 4.25450 4.49430 4.52378 4.55775 4.60492 4.61685 4.64171 4.78123 4.86987 5.00951 5.13878 5.23057 5.26957 5.29430 5.47562 5.70001 5.96430 6.00746 6.44408 6.50070 6.67085 6.83109 7.09921 8.73291 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.005047 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.467409 B = 5546.229499 C = 6767.474668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.089 0.911 4 O -0.581 6.581 5 C 0.095 3.905 6 N -0.746 5.746 7 C 0.220 3.780 8 C -0.185 4.185 9 C -0.075 4.075 10 C -0.166 4.166 11 C -0.111 4.111 12 C -0.176 4.176 13 S -0.166 6.166 14 C 0.042 3.958 15 C -0.534 4.534 16 H 0.039 0.961 17 C 0.025 3.975 18 N -0.935 5.935 19 Si 0.949 3.051 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.248 1.248 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.388 0.612 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.397 0.603 30 H 0.151 0.849 31 H 0.158 0.842 32 H 0.140 0.860 33 H 0.107 0.893 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.625 -5.973 -9.522 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.031 3.969 3 H 0.107 0.893 4 O -0.388 6.388 5 C -0.029 4.029 6 N -0.376 5.376 7 C 0.111 3.889 8 C -0.209 4.209 9 C -0.096 4.096 10 C -0.188 4.188 11 C -0.135 4.135 12 C -0.293 4.293 13 S 0.077 5.923 14 C -0.106 4.106 15 C -0.573 4.573 16 H 0.058 0.942 17 C -0.176 4.176 18 N -0.574 5.574 19 Si 0.771 3.229 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.171 1.171 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.237 0.763 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.233 0.767 30 H 0.169 0.831 31 H 0.175 0.825 32 H 0.157 0.843 33 H 0.125 0.875 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.737 -4.763 -8.301 24.669 hybrid contribution 1.493 -0.883 -0.888 1.949 sum -21.244 -5.646 -9.189 23.825 Atomic orbital electron populations 1.22338 0.92993 1.03948 1.03693 1.22172 0.95094 0.96270 0.83362 0.89264 1.86630 1.77872 1.30308 1.44037 1.22257 0.79312 1.01710 0.99622 1.44887 1.05960 1.62690 1.24034 1.17569 0.88150 0.93353 0.89798 1.20843 1.00497 1.04776 0.94826 1.21273 0.93486 0.96955 0.97913 1.21081 0.95239 1.03404 0.99042 1.21137 0.99345 0.98623 0.94410 1.21541 0.95564 1.10689 1.01522 1.85017 1.04384 1.72269 1.30604 1.21366 0.90527 0.99561 0.99117 1.20606 0.91270 1.38268 1.07135 0.94247 1.25835 0.96741 0.95211 0.99784 1.69999 1.05013 1.45726 1.36630 0.85681 0.78479 0.79844 0.78924 1.18444 1.19766 1.17146 0.90602 0.91620 0.89953 0.76277 0.90093 0.90525 0.76746 0.83140 0.82468 0.84266 0.87507 0.93971 0.94108 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.53 71.98 0.69 -1.07 16 2 C 0.09 1.51 3.67 30.59 0.11 1.62 16 3 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 4 O -0.58 -12.30 13.08 -148.98 -1.95 -14.25 16 5 C 0.09 1.65 4.58 86.38 0.40 2.04 16 6 N -0.75 -20.54 5.58 -338.82 -1.89 -22.43 16 7 C 0.22 6.80 6.66 38.24 0.25 7.05 16 8 C -0.19 -4.38 9.31 22.38 0.21 -4.17 16 9 C -0.08 -1.67 10.04 22.29 0.22 -1.44 16 10 C -0.17 -4.49 10.04 22.28 0.22 -4.26 16 11 C -0.11 -3.90 9.36 22.39 0.21 -3.69 16 12 C -0.18 -6.66 6.12 22.70 0.14 -6.52 16 13 S -0.17 -7.49 20.37 -56.49 -1.15 -8.64 16 14 C 0.04 2.14 3.16 71.24 0.23 2.36 16 15 C -0.53 -32.00 9.68 25.60 0.25 -31.75 16 16 H 0.04 2.64 7.96 -2.92 -0.02 2.61 16 17 C 0.03 1.47 5.47 84.66 0.46 1.93 16 18 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 19 Si 0.95 43.60 27.47 68.60 1.88 45.49 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 23 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 26 H 0.39 5.43 9.04 -74.06 -0.67 4.76 16 27 H 0.08 1.18 7.96 -2.39 -0.02 1.16 16 28 H 0.08 1.09 7.95 -2.39 -0.02 1.07 16 29 H 0.40 12.89 6.89 -92.71 -0.64 12.25 16 30 H 0.15 2.52 6.74 -2.91 -0.02 2.50 16 31 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 33 H 0.11 4.02 5.88 -2.91 -0.02 4.00 16 34 H 0.04 2.08 6.81 -2.39 -0.02 2.07 16 35 H 0.04 1.99 7.18 -2.39 -0.02 1.97 16 36 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -71.99 312.23 0.31 -71.68 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -0.27 Total: 24.16 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 3.39 Total: -37.89 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -1.59 Total: -80.54 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -1.95 Total: -14.25 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.49 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -1.15 Total: -8.64 kcal Total: -71.99 0.31 -71.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.818 kcal (2) G-P(sol) polarization free energy of solvation -71.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds