Wall clock time and date at job start Mon Mar 30 2020 00:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00050 * 2 1 4 4 C 1.38837 * 120.01618 * 0.02562 * 3 2 1 5 5 C 1.38190 * 120.10227 * 179.97438 * 4 3 2 6 6 C 1.38136 * 120.13937 * 359.72551 * 5 4 3 7 7 C 1.38997 * 120.02336 * 0.54663 * 6 5 4 8 8 S 1.76195 * 120.05005 * 179.72036 * 7 6 5 9 9 C 1.81401 * 103.00286 * 359.73355 * 8 7 6 10 10 C 1.52999 * 109.47724 * 179.97438 * 9 8 7 11 11 N 1.46493 * 109.47173 * 180.02562 * 10 9 8 12 12 C 1.46495 * 120.00379 * 90.00224 * 11 10 9 13 13 C 1.36934 * 119.99610 * 269.99436 * 11 10 9 14 14 H 1.08002 * 120.00196 * 23.04874 * 13 11 10 15 15 C 1.38816 * 120.00242 * 203.05041 * 13 11 10 16 16 N 1.31624 * 119.99872 * 12.93302 * 15 13 11 17 17 Si 1.86805 * 120.00254 * 192.94033 * 15 13 11 18 18 H 1.48502 * 109.47018 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47036 * 119.99489 * 17 15 13 20 20 H 1.48499 * 109.46873 * 239.99672 * 17 15 13 21 21 C 1.38547 * 120.01673 * 180.02562 * 3 2 1 22 22 H 1.09004 * 109.47014 * 60.00244 * 1 2 3 23 23 H 1.08990 * 109.47270 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47011 * 300.00424 * 1 2 3 25 25 H 1.07996 * 119.94752 * 359.96311 * 4 3 2 26 26 H 1.08000 * 119.93012 * 180.02562 * 5 4 3 27 27 H 1.07991 * 119.98933 * 180.28067 * 6 5 4 28 28 H 1.09001 * 109.47184 * 300.00370 * 9 8 7 29 29 H 1.09003 * 109.46825 * 59.99170 * 9 8 7 30 30 H 1.09002 * 109.46731 * 300.00046 * 10 9 8 31 31 H 1.08995 * 109.47092 * 59.99327 * 10 9 8 32 32 H 1.08996 * 109.47859 * 95.12192 * 12 11 10 33 33 H 1.09004 * 109.47064 * 215.11835 * 12 11 10 34 34 H 1.08998 * 109.46977 * 335.11119 * 12 11 10 35 35 H 0.96997 * 119.99707 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.06831 * 0.04038 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2901 2.3754 0.0005 5 6 1.9157 3.6077 0.0011 6 6 3.2948 3.6854 0.0068 7 6 4.0569 2.5230 0.0006 8 16 5.8161 2.6213 0.0004 9 6 6.1250 4.4089 0.0012 10 6 7.6332 4.6660 0.0018 11 7 7.8825 6.1095 0.0031 12 6 8.0069 6.8303 1.2724 13 6 7.9994 6.7851 -1.1822 14 1 7.5580 6.3797 -2.0807 15 6 8.6853 7.9911 -1.2291 16 7 9.4346 8.3620 -0.2125 17 14 8.5449 9.0876 -2.7349 18 1 7.6485 8.4479 -3.7312 19 1 7.9847 10.4044 -2.3378 20 1 9.8902 9.2820 -3.3328 21 6 3.4295 1.2837 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2117 2.3182 0.0004 26 1 1.3250 4.5118 0.0019 27 1 3.7811 4.6496 0.0118 28 1 5.6804 4.8548 -0.8884 29 1 5.6805 4.8539 0.8915 30 1 8.0774 4.2201 0.8918 31 1 8.0780 4.2208 -0.8881 32 1 9.0598 6.9133 1.5416 33 1 7.5791 7.8274 1.1675 34 1 7.4741 6.2868 2.0526 35 1 9.9136 9.2048 -0.2451 36 1 4.0191 0.3788 -0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595303681.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:00 Heat of formation + Delta-G solvation = -7.416162 kcal Electronic energy + Delta-G solvation = -17233.538361 eV Core-core repulsion = 14423.432869 eV Total energy + Delta-G solvation = -2810.105492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.01039 -38.33240 -37.78379 -33.96458 -32.17018 -31.58677 -30.72828 -28.13017 -27.95727 -25.67542 -23.80620 -23.18561 -22.25786 -19.51509 -18.78125 -17.49407 -17.11823 -16.94822 -16.86055 -16.65975 -15.94379 -15.72933 -14.92180 -14.82387 -14.61618 -14.56064 -14.19666 -13.83146 -13.27317 -13.09384 -12.89398 -12.76243 -12.58972 -12.42421 -12.22907 -12.12705 -12.06728 -11.88065 -11.77331 -11.15419 -10.70005 -10.67089 -9.36092 -8.87351 -8.44023 -7.86902 -5.38104 0.14683 0.37360 0.46817 1.44382 1.45944 1.47491 1.57815 2.38119 2.49502 2.64453 3.26798 3.72880 3.80272 3.99390 4.05619 4.13940 4.15872 4.24154 4.42515 4.46350 4.50863 4.59806 4.74406 4.79493 4.84959 4.85967 5.06758 5.17018 5.26978 5.30997 5.39645 5.59860 5.60213 5.67740 6.27788 6.40465 7.10114 7.78933 8.23063 9.16458 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.034786 B = 0.003590 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.736873 B = 7796.517081 C = 8150.835413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.138 3.862 4 C -0.212 4.212 5 C -0.060 4.060 6 C -0.186 4.186 7 C -0.053 4.053 8 S -0.121 6.121 9 C -0.101 4.101 10 C 0.168 3.832 11 N -0.612 5.612 12 C 0.173 3.827 13 C -0.269 4.269 14 H 0.072 0.928 15 C -0.050 4.050 16 N -0.937 5.937 17 Si 0.970 3.030 18 H -0.266 1.266 19 H -0.289 1.289 20 H -0.291 1.291 21 C -0.155 4.155 22 H 0.067 0.933 23 H 0.120 0.880 24 H 0.067 0.933 25 H 0.160 0.840 26 H 0.153 0.847 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.009 0.991 33 H 0.018 0.982 34 H 0.032 0.968 35 H 0.250 0.750 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.004 -13.773 1.493 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.090 3.910 4 C -0.233 4.233 5 C -0.079 4.079 6 C -0.210 4.210 7 C -0.166 4.166 8 S 0.123 5.877 9 C -0.252 4.252 10 C 0.040 3.960 11 N -0.335 5.335 12 C 0.028 3.972 13 C -0.399 4.399 14 H 0.089 0.911 15 C -0.245 4.245 16 N -0.583 5.583 17 Si 0.798 3.202 18 H -0.191 1.191 19 H -0.216 1.216 20 H -0.218 1.218 21 C -0.180 4.180 22 H 0.085 0.915 23 H 0.138 0.862 24 H 0.086 0.914 25 H 0.177 0.823 26 H 0.171 0.829 27 H 0.140 0.860 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.037 0.963 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.858 -14.642 1.522 23.144 hybrid contribution -0.762 2.002 -0.614 2.229 sum -18.620 -12.640 0.909 22.523 Atomic orbital electron populations 1.23397 0.76064 1.05741 1.02517 1.86052 1.23784 1.26396 1.88486 1.18901 0.91521 0.85190 0.95359 1.21535 1.01421 0.91388 1.08971 1.21166 0.93320 0.98538 0.94917 1.21322 0.95484 0.97023 1.07149 1.21614 0.96879 0.96061 1.02048 1.85287 0.99721 1.11083 1.91596 1.24422 1.03844 0.92228 1.04747 1.20456 0.90403 0.84509 1.00638 1.44140 1.83177 1.03013 1.03168 1.20614 0.97581 0.93968 0.85047 1.19546 1.28143 1.03543 0.88677 0.91069 1.25824 0.97075 1.01164 1.00476 1.70241 1.32151 1.22996 1.32897 0.85161 0.77231 0.78546 0.79239 1.19063 1.21563 1.21786 1.19978 0.92335 0.96593 1.09074 0.91477 0.86220 0.91401 0.82297 0.82910 0.86011 0.90583 0.90035 0.92414 0.92965 0.97246 0.96283 0.94903 0.94083 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.85 10.49 -92.38 -0.97 -7.82 16 3 C 0.14 3.22 6.68 22.49 0.15 3.37 16 4 C -0.21 -4.15 9.04 22.40 0.20 -3.94 16 5 C -0.06 -1.29 10.03 22.23 0.22 -1.06 16 6 C -0.19 -5.08 9.36 22.43 0.21 -4.87 16 7 C -0.05 -1.54 6.11 22.61 0.14 -1.40 16 8 S -0.12 -3.80 21.92 -56.49 -1.24 -5.04 16 9 C -0.10 -3.56 4.66 71.98 0.34 -3.22 16 10 C 0.17 6.89 5.65 86.38 0.49 7.38 16 11 N -0.61 -30.75 2.92 -726.97 -2.12 -32.87 16 12 C 0.17 8.54 8.98 127.77 1.15 9.68 16 13 C -0.27 -14.75 9.65 84.03 0.81 -13.94 16 14 H 0.07 3.80 7.86 -2.91 -0.02 3.78 16 15 C -0.05 -2.79 5.10 84.86 0.43 -2.36 16 16 N -0.94 -55.34 10.71 21.65 0.23 -55.11 16 17 Si 0.97 44.86 29.57 68.60 2.03 46.89 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 21 C -0.15 -4.21 9.73 22.50 0.22 -3.99 16 22 H 0.07 0.57 7.66 -2.38 -0.02 0.55 16 23 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.07 0.56 7.66 -2.38 -0.02 0.55 16 25 H 0.16 2.00 6.29 -2.91 -0.02 1.98 16 26 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 27 H 0.12 3.47 5.87 -2.92 -0.02 3.45 16 28 H 0.08 2.82 7.76 -2.39 -0.02 2.80 16 29 H 0.08 2.82 7.73 -2.39 -0.02 2.80 16 30 H 0.06 2.23 8.07 -2.39 -0.02 2.21 16 31 H 0.05 2.19 8.04 -2.39 -0.02 2.17 16 32 H 0.01 0.50 7.34 -2.39 -0.02 0.48 16 33 H 0.02 0.99 7.34 -2.39 -0.02 0.97 16 34 H 0.03 1.37 8.03 -2.39 -0.02 1.35 16 35 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 36 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -64.59 313.98 4.46 -60.13 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.06 Total: 6.89 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 5.47 Total: -13.07 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -1.89 Total: -87.98 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.97 Total: -7.82 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -1.24 Total: -5.04 kcal Total: -64.59 4.46 -60.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595303681.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.719 kcal (2) G-P(sol) polarization free energy of solvation -64.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds