Wall clock time and date at job start Mon Mar 30 2020 00:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00612 * 2 1 4 4 H 1.08996 * 109.46893 * 29.99541 * 3 2 1 5 5 C 1.50698 * 109.47379 * 150.00105 * 3 2 1 6 6 O 1.21286 * 120.00198 * 19.59490 * 5 3 2 7 7 N 1.34771 * 119.99663 * 199.59398 * 5 3 2 8 8 C 1.46504 * 120.00347 * 6.02188 * 7 5 3 9 9 C 1.37101 * 119.99874 * 186.01997 * 7 5 3 10 10 H 1.08002 * 119.99827 * 19.97156 * 9 7 5 11 11 C 1.38955 * 119.99934 * 199.96691 * 9 7 5 12 12 N 1.31410 * 119.99725 * 18.57460 * 11 9 7 13 13 Si 1.86802 * 120.00033 * 198.56698 * 11 9 7 14 14 H 1.48498 * 109.46825 * 94.98462 * 13 11 9 15 15 H 1.48496 * 109.47303 * 214.98821 * 13 11 9 16 16 H 1.48508 * 109.46921 * 334.98745 * 13 11 9 17 17 C 1.50701 * 109.46701 * 270.00212 * 3 2 1 18 18 C 1.38244 * 119.97636 * 132.26982 * 17 3 2 19 19 C 1.38192 * 120.03037 * 179.97438 * 18 17 3 20 20 C 1.38463 * 119.97023 * 359.97438 * 19 18 17 21 21 F 1.35099 * 120.02352 * 179.97438 * 20 19 18 22 22 C 1.38458 * 119.95327 * 0.25958 * 20 19 18 23 23 C 1.38205 * 119.96832 * 359.50986 * 22 20 19 24 24 H 1.08998 * 109.47561 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46696 * 300.00164 * 1 2 3 26 26 H 1.08997 * 109.47298 * 59.99810 * 1 2 3 27 27 H 1.08993 * 109.46988 * 95.72487 * 8 7 5 28 28 H 1.09000 * 109.47341 * 215.72952 * 8 7 5 29 29 H 1.09001 * 109.46636 * 335.72825 * 8 7 5 30 30 H 0.97008 * 119.99454 * 179.97438 * 12 11 9 31 31 H 1.08004 * 119.98694 * 359.97438 * 18 17 3 32 32 H 1.07993 * 120.01604 * 180.02562 * 19 18 17 33 33 H 1.07996 * 120.01511 * 179.74138 * 22 20 19 34 34 H 1.08001 * 119.98474 * 180.25333 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5137 5 6 3.3387 1.2638 0.7104 6 8 3.9156 0.2069 0.8561 7 7 3.8856 2.4009 1.1837 8 6 3.1317 3.6558 1.1261 9 6 5.1476 2.3835 1.7192 10 1 5.8231 1.5744 1.4834 11 6 5.5576 3.4068 2.5651 12 7 4.6649 4.1788 3.1431 13 14 7.3776 3.6849 2.8809 14 1 7.8873 4.7265 1.9534 15 1 7.5740 4.1317 4.2834 16 1 8.1182 2.4173 2.6569 17 6 2.2146 1.7642 -1.4209 18 6 1.8077 3.0288 -1.8036 19 6 1.9950 3.4508 -3.1061 20 6 2.5909 2.6067 -4.0278 21 9 2.7740 3.0181 -5.3016 22 6 2.9937 1.3387 -3.6447 23 6 2.8097 0.9206 -2.3403 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 2.6289 3.8215 2.0788 28 1 3.8149 4.4814 0.9272 29 1 2.3902 3.5978 0.3292 30 1 4.9511 4.8929 3.7340 31 1 1.3432 3.6871 -1.0844 32 1 1.6774 4.4389 -3.4048 33 1 3.4548 0.6780 -4.3638 34 1 3.1274 -0.0670 -2.0401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599227199.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:30 Heat of formation + Delta-G solvation = -100.146387 kcal Electronic energy + Delta-G solvation = -20567.849124 eV Core-core repulsion = 17187.509372 eV Total energy + Delta-G solvation = -3380.339752 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.92027 -41.29730 -39.52685 -38.29787 -36.62121 -33.89048 -32.52651 -32.15027 -28.88921 -28.15491 -26.98200 -25.77523 -24.02290 -22.99369 -20.90962 -18.99510 -18.81216 -18.28326 -17.64469 -17.40386 -16.89067 -16.58645 -16.57622 -15.86280 -15.68942 -15.42309 -15.17588 -14.58239 -14.54561 -14.28121 -13.82354 -13.61571 -13.36681 -13.17504 -13.15801 -12.80159 -12.53621 -12.38385 -12.29931 -12.13942 -11.87655 -11.06817 -10.92624 -10.35893 -10.09004 -9.73281 -9.57385 -8.36794 -5.98097 0.02569 0.24311 1.35084 1.40930 1.52921 1.91273 2.18288 2.51054 2.54911 3.03099 3.21936 3.42565 3.58749 3.74126 3.92438 4.01289 4.07579 4.29025 4.41804 4.53203 4.56408 4.57276 4.83884 4.90966 4.93785 4.98513 5.09867 5.20368 5.32886 5.43981 5.45383 5.86133 5.95451 6.18013 6.48352 7.14358 7.40943 7.97830 8.64724 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.006590 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.518519 B = 4248.076617 C = 5031.376209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.385 6.385 3 C 0.135 3.865 4 H 0.104 0.896 5 C 0.438 3.562 6 O -0.621 6.621 7 N -0.451 5.451 8 C 0.109 3.891 9 C -0.348 4.348 10 H 0.069 0.931 11 C 0.004 3.996 12 N -0.887 5.887 13 Si 0.985 3.015 14 H -0.264 1.264 15 H -0.272 1.272 16 H -0.277 1.277 17 C -0.125 4.125 18 C -0.078 4.078 19 C -0.145 4.145 20 C 0.090 3.910 21 F -0.142 7.142 22 C -0.156 4.156 23 C -0.073 4.073 24 H 0.103 0.897 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.276 0.724 31 H 0.163 0.837 32 H 0.167 0.833 33 H 0.150 0.850 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.805 2.688 -10.540 14.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.303 6.303 3 C 0.074 3.926 4 H 0.122 0.878 5 C 0.227 3.773 6 O -0.507 6.507 7 N -0.170 5.170 8 C -0.033 4.033 9 C -0.475 4.475 10 H 0.087 0.913 11 C -0.199 4.199 12 N -0.525 5.525 13 Si 0.809 3.191 14 H -0.189 1.189 15 H -0.197 1.197 16 H -0.202 1.202 17 C -0.126 4.126 18 C -0.096 4.096 19 C -0.164 4.164 20 C 0.071 3.929 21 F -0.121 7.121 22 C -0.175 4.175 23 C -0.091 4.091 24 H 0.121 0.879 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.180 0.820 32 H 0.185 0.815 33 H 0.168 0.832 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.427 2.215 -10.368 14.187 hybrid contribution 0.899 0.135 0.285 0.952 sum -8.528 2.350 -10.083 13.414 Atomic orbital electron populations 1.23123 0.78828 1.04355 1.01250 1.88010 1.21871 1.25577 1.94878 1.20563 0.93214 0.86596 0.92270 0.87831 1.20538 0.88176 0.83727 0.84901 1.90481 1.65224 1.31298 1.63740 1.43747 1.14664 1.06929 1.51651 1.21733 0.95385 0.85641 1.00570 1.19596 0.89364 1.10423 1.28144 0.91288 1.26003 1.03877 0.96069 0.93962 1.70076 1.34862 1.19894 1.27709 0.85045 0.77507 0.78546 0.78030 1.18854 1.19691 1.20239 1.20210 1.01556 0.96117 0.94683 1.21207 0.98016 0.94169 0.96194 1.21355 1.01141 1.01331 0.92545 1.17866 1.01311 0.94224 0.79487 1.91482 1.93441 1.90610 1.36555 1.21252 1.03178 0.95902 0.97170 1.20861 0.95915 0.99939 0.92382 0.87905 0.92827 0.92309 0.92841 0.92902 0.90621 0.91446 0.81993 0.81514 0.83206 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.81 113.37 1.23 1.72 16 2 O -0.39 -14.42 9.57 -130.72 -1.25 -15.67 16 3 C 0.13 5.06 1.98 29.10 0.06 5.12 16 4 H 0.10 3.29 6.30 -2.39 -0.02 3.27 16 5 C 0.44 22.30 6.75 87.66 0.59 22.89 16 6 O -0.62 -37.53 16.32 15.21 0.25 -37.28 16 7 N -0.45 -23.40 3.02 -658.89 -1.99 -25.39 16 8 C 0.11 4.61 8.42 127.77 1.08 5.69 16 9 C -0.35 -20.01 9.27 84.04 0.78 -19.23 16 10 H 0.07 4.31 7.46 -2.91 -0.02 4.28 16 11 C 0.00 0.20 4.99 84.93 0.42 0.63 16 12 N -0.89 -46.24 10.86 21.66 0.24 -46.01 16 13 Si 0.99 42.32 29.59 68.60 2.03 44.35 16 14 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 15 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 16 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 17 C -0.12 -4.04 4.76 -19.86 -0.09 -4.13 16 18 C -0.08 -1.97 8.54 22.26 0.19 -1.78 16 19 C -0.15 -3.33 10.03 22.31 0.22 -3.11 16 20 C 0.09 2.35 7.30 22.38 0.16 2.51 16 21 F -0.14 -3.63 17.27 44.97 0.78 -2.85 16 22 C -0.16 -4.36 10.03 22.31 0.22 -4.13 16 23 C -0.07 -2.41 9.28 22.26 0.21 -2.20 16 24 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.05 1.19 8.09 -2.38 -0.02 1.17 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 27 H 0.05 2.36 7.37 -2.39 -0.02 2.34 16 28 H 0.05 2.33 7.33 -2.39 -0.02 2.31 16 29 H 0.08 2.45 3.02 -2.39 -0.01 2.45 16 30 H 0.28 13.35 8.31 -92.70 -0.77 12.58 16 31 H 0.16 3.17 6.53 -2.91 -0.02 3.15 16 32 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 33 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.12 4.35 8.00 -2.91 -0.02 4.33 16 Total: -1.00 -71.64 294.91 6.24 -65.40 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.12 Total: 13.47 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 5.07 Total: 3.98 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -1.75 Total: -71.40 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -1.00 Total: -52.95 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -71.64 6.24 -65.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599227199.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.746 kcal (2) G-P(sol) polarization free energy of solvation -71.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds