Wall clock time and date at job start Mon Mar 30 2020 00:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99894 * 2 1 4 4 H 1.08993 * 109.47154 * 29.99805 * 3 2 1 5 5 C 1.50703 * 109.46972 * 270.00104 * 3 2 1 6 6 O 1.21299 * 119.99882 * 355.00038 * 5 3 2 7 7 N 1.34774 * 120.00123 * 175.00347 * 5 3 2 8 8 C 1.46503 * 119.99985 * 359.97438 * 7 5 3 9 9 C 1.37103 * 120.00086 * 180.02562 * 7 5 3 10 10 H 1.07999 * 119.99690 * 25.13944 * 9 7 5 11 11 C 1.38948 * 119.99668 * 205.13594 * 9 7 5 12 12 N 1.31408 * 120.00197 * 11.66831 * 11 9 7 13 13 Si 1.86807 * 119.99670 * 191.66857 * 11 9 7 14 14 H 1.48493 * 109.47478 * 89.99990 * 13 11 9 15 15 H 1.48497 * 109.46751 * 210.00190 * 13 11 9 16 16 H 1.48496 * 109.46808 * 329.99920 * 13 11 9 17 17 C 1.50700 * 109.47232 * 150.00449 * 3 2 1 18 18 C 1.38246 * 119.97419 * 220.00115 * 17 3 2 19 19 C 1.38190 * 120.02609 * 180.02562 * 18 17 3 20 20 C 1.38462 * 119.97763 * 0.22747 * 19 18 17 21 21 F 1.35100 * 120.02572 * 179.72939 * 20 19 18 22 22 C 1.38460 * 119.94401 * 359.49520 * 20 19 18 23 23 C 1.38203 * 119.97510 * 0.53021 * 22 20 19 24 24 H 1.08998 * 109.47385 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47165 * 300.00229 * 1 2 3 26 26 H 1.08993 * 109.47450 * 59.99892 * 1 2 3 27 27 H 1.09008 * 109.46736 * 85.19051 * 8 7 5 28 28 H 1.08994 * 109.47382 * 205.18716 * 8 7 5 29 29 H 1.08994 * 109.47201 * 325.19346 * 8 7 5 30 30 H 0.97006 * 120.00149 * 180.02562 * 12 11 9 31 31 H 1.08007 * 119.98497 * 0.02562 * 18 17 3 32 32 H 1.08006 * 120.01036 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.01360 * 180.25429 * 22 20 19 34 34 H 1.07994 * 119.98746 * 179.74801 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4209 6 8 1.9790 1.0105 -2.3415 7 7 2.6588 3.0124 -1.6687 8 6 2.9427 3.9231 -0.5568 9 6 2.8441 3.4300 -2.9613 10 1 2.2860 2.9693 -3.7629 11 6 3.7500 4.4461 -3.2399 12 7 4.5909 4.8489 -2.3139 13 14 3.7725 5.2395 -4.9310 14 1 2.8460 6.3999 -4.9458 15 1 5.1490 5.7011 -5.2428 16 1 3.3404 4.2481 -5.9486 17 6 3.3386 1.2640 0.7103 18 6 3.7057 2.2993 1.5497 19 6 4.9239 2.2626 2.2011 20 6 5.7790 1.1905 2.0093 21 9 6.9725 1.1563 2.6415 22 6 5.4078 0.1514 1.1729 23 6 4.1892 0.1906 0.5220 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 3.9562 3.7497 -0.1949 28 1 2.8505 4.9539 -0.8988 29 1 2.2329 3.7433 0.2505 30 1 5.2231 5.5586 -2.5083 31 1 3.0402 3.1372 1.6963 32 1 5.2106 3.0718 2.8565 33 1 6.0721 -0.6872 1.0257 34 1 3.9013 -0.6179 -0.1335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599227200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:34 Heat of formation + Delta-G solvation = -80.309002 kcal Electronic energy + Delta-G solvation = -20774.683580 eV Core-core repulsion = 17395.204041 eV Total energy + Delta-G solvation = -3379.479539 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.66366 -39.79600 -37.92876 -36.78774 -34.59454 -32.14181 -31.00269 -30.88178 -27.14753 -26.50397 -25.65323 -23.97166 -22.65544 -21.60374 -19.21767 -17.54369 -17.05334 -16.68803 -16.17262 -15.95051 -15.34993 -15.32219 -14.83950 -14.36843 -13.95481 -13.80742 -13.73508 -13.25181 -13.03383 -12.90979 -12.37371 -11.90038 -11.82530 -11.52741 -11.31116 -11.16056 -10.97088 -10.91211 -10.62238 -10.36860 -10.20208 -9.87942 -9.08343 -8.74453 -8.62758 -7.93214 -7.67759 -6.35041 -3.92780 1.36624 1.53866 3.13814 3.23410 3.28549 3.67899 3.78639 4.04312 4.21995 4.50119 4.89365 4.96251 5.05465 5.10874 5.14255 5.37166 5.52218 5.59312 5.70364 5.77924 5.81407 5.97575 6.11297 6.21316 6.23836 6.36706 6.50799 6.73253 6.79239 7.13426 7.14453 7.39673 7.53422 8.10397 8.45075 9.14714 9.36130 9.92241 10.69292 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.007743 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.217048 B = 3615.417169 C = 4824.964334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.122 3.878 4 H 0.078 0.922 5 C 0.428 3.572 6 O -0.571 6.571 7 N -0.437 5.437 8 C 0.104 3.896 9 C -0.309 4.309 10 H 0.098 0.902 11 C 0.033 3.967 12 N -0.878 5.878 13 Si 0.926 3.074 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.269 1.269 17 C -0.082 4.082 18 C -0.073 4.073 19 C -0.155 4.155 20 C 0.095 3.905 21 F -0.146 7.146 22 C -0.159 4.159 23 C -0.054 4.054 24 H 0.084 0.916 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.023 0.977 30 H 0.268 0.732 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.293 -2.971 10.178 10.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.277 6.277 3 C 0.061 3.939 4 H 0.096 0.904 5 C 0.215 3.785 6 O -0.455 6.455 7 N -0.157 5.157 8 C -0.040 4.040 9 C -0.437 4.437 10 H 0.116 0.884 11 C -0.171 4.171 12 N -0.517 5.517 13 Si 0.753 3.247 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.193 1.193 17 C -0.083 4.083 18 C -0.091 4.091 19 C -0.174 4.174 20 C 0.076 3.924 21 F -0.124 7.124 22 C -0.178 4.178 23 C -0.072 4.072 24 H 0.103 0.897 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.100 -3.358 9.752 10.526 hybrid contribution 0.276 0.860 -0.667 1.122 sum -1.825 -2.498 9.085 9.597 Atomic orbital electron populations 1.22754 0.81095 1.02496 0.99856 1.87877 1.19606 1.25452 1.94749 1.20701 0.92319 0.86011 0.94897 0.90398 1.20373 0.85777 0.82574 0.89761 1.90533 1.56202 1.53543 1.45220 1.43570 1.56220 1.09191 1.06759 1.21928 0.98494 0.96011 0.87565 1.19649 1.21840 1.17980 0.84185 0.88440 1.25355 0.94310 0.98103 0.99321 1.69978 1.18837 1.28876 1.34028 0.85928 0.77452 0.79308 0.82057 1.20343 1.20887 1.19336 1.19491 0.95715 0.95666 0.97455 1.20993 0.96263 0.97591 0.94300 1.20966 0.94867 0.98358 1.03214 1.17711 0.81980 0.96737 0.95944 1.91463 1.43765 1.96684 1.80509 1.21073 0.98361 0.99087 0.99252 1.20850 0.91743 0.97942 0.96710 0.89742 0.94555 0.93488 0.91954 0.90606 0.95914 0.92170 0.84492 0.84751 0.84973 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.81 101.05 1.09 1.60 16 2 O -0.36 -6.72 9.21 -55.09 -0.51 -7.23 16 3 C 0.12 2.34 2.06 -29.03 -0.06 2.28 16 4 H 0.08 1.29 6.65 -51.93 -0.35 0.95 16 5 C 0.43 10.51 6.99 -10.99 -0.08 10.43 16 6 O -0.57 -16.12 16.23 -14.32 -0.23 -16.35 16 7 N -0.44 -11.10 3.01 -122.19 -0.37 -11.46 16 8 C 0.10 2.23 6.74 59.85 0.40 2.63 16 9 C -0.31 -8.57 9.23 -14.93 -0.14 -8.71 16 10 H 0.10 2.84 7.46 -52.49 -0.39 2.45 16 11 C 0.03 0.86 5.06 -17.47 -0.09 0.77 16 12 N -0.88 -23.20 10.83 55.50 0.60 -22.60 16 13 Si 0.93 20.67 29.57 -169.99 -5.03 15.64 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 C -0.08 -1.48 4.50 -104.62 -0.47 -1.95 16 18 C -0.07 -1.15 6.80 -39.60 -0.27 -1.42 16 19 C -0.16 -2.31 10.03 -39.52 -0.40 -2.71 16 20 C 0.10 1.51 7.30 -39.42 -0.29 1.22 16 21 F -0.15 -2.26 17.27 2.25 0.04 -2.22 16 22 C -0.16 -2.52 10.03 -39.51 -0.40 -2.92 16 23 C -0.05 -0.96 9.35 -39.59 -0.37 -1.33 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.04 0.44 8.09 -51.93 -0.42 0.02 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.39 6.11 -51.92 -0.32 1.07 16 28 H 0.08 1.73 6.78 -51.93 -0.35 1.38 16 29 H 0.02 0.39 4.82 -51.93 -0.25 0.14 16 30 H 0.27 6.72 8.31 -40.82 -0.34 6.39 16 31 H 0.14 1.84 6.02 -52.48 -0.32 1.53 16 32 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.14 2.45 7.78 -52.49 -0.41 2.04 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -31.76 290.73 -5.80 -37.55 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.63 Total: 2.37 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.06 Total: -0.08 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.23 Total: -34.06 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.74 Total: -23.58 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.76 -5.80 -37.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599227200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.757 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds