Wall clock time and date at job start Mon Mar 30 2020 00:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99894 * 2 1 4 4 H 1.08993 * 109.47154 * 29.99805 * 3 2 1 5 5 C 1.50703 * 109.46972 * 270.00104 * 3 2 1 6 6 O 1.21299 * 119.99882 * 355.00038 * 5 3 2 7 7 N 1.34774 * 120.00123 * 175.00347 * 5 3 2 8 8 C 1.46503 * 119.99985 * 359.97438 * 7 5 3 9 9 C 1.37103 * 120.00086 * 180.02562 * 7 5 3 10 10 H 1.07999 * 119.99690 * 25.13944 * 9 7 5 11 11 C 1.38948 * 119.99668 * 205.13594 * 9 7 5 12 12 N 1.31408 * 120.00197 * 11.66831 * 11 9 7 13 13 Si 1.86807 * 119.99670 * 191.66857 * 11 9 7 14 14 H 1.48493 * 109.47478 * 89.99990 * 13 11 9 15 15 H 1.48497 * 109.46751 * 210.00190 * 13 11 9 16 16 H 1.48496 * 109.46808 * 329.99920 * 13 11 9 17 17 C 1.50700 * 109.47232 * 150.00449 * 3 2 1 18 18 C 1.38246 * 119.97419 * 220.00115 * 17 3 2 19 19 C 1.38190 * 120.02609 * 180.02562 * 18 17 3 20 20 C 1.38462 * 119.97763 * 0.22747 * 19 18 17 21 21 F 1.35100 * 120.02572 * 179.72939 * 20 19 18 22 22 C 1.38460 * 119.94401 * 359.49520 * 20 19 18 23 23 C 1.38203 * 119.97510 * 0.53021 * 22 20 19 24 24 H 1.08998 * 109.47385 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47165 * 300.00229 * 1 2 3 26 26 H 1.08993 * 109.47450 * 59.99892 * 1 2 3 27 27 H 1.09008 * 109.46736 * 85.19051 * 8 7 5 28 28 H 1.08994 * 109.47382 * 205.18716 * 8 7 5 29 29 H 1.08994 * 109.47201 * 325.19346 * 8 7 5 30 30 H 0.97006 * 120.00149 * 180.02562 * 12 11 9 31 31 H 1.08007 * 119.98497 * 0.02562 * 18 17 3 32 32 H 1.08006 * 120.01036 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.01360 * 180.25429 * 22 20 19 34 34 H 1.07994 * 119.98746 * 179.74801 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4209 6 8 1.9790 1.0105 -2.3415 7 7 2.6588 3.0124 -1.6687 8 6 2.9427 3.9231 -0.5568 9 6 2.8441 3.4300 -2.9613 10 1 2.2860 2.9693 -3.7629 11 6 3.7500 4.4461 -3.2399 12 7 4.5909 4.8489 -2.3139 13 14 3.7725 5.2395 -4.9310 14 1 2.8460 6.3999 -4.9458 15 1 5.1490 5.7011 -5.2428 16 1 3.3404 4.2481 -5.9486 17 6 3.3386 1.2640 0.7103 18 6 3.7057 2.2993 1.5497 19 6 4.9239 2.2626 2.2011 20 6 5.7790 1.1905 2.0093 21 9 6.9725 1.1563 2.6415 22 6 5.4078 0.1514 1.1729 23 6 4.1892 0.1906 0.5220 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 3.9562 3.7497 -0.1949 28 1 2.8505 4.9539 -0.8988 29 1 2.2329 3.7433 0.2505 30 1 5.2231 5.5586 -2.5083 31 1 3.0402 3.1372 1.6963 32 1 5.2106 3.0718 2.8565 33 1 6.0721 -0.6872 1.0257 34 1 3.9013 -0.6179 -0.1335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599227200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:33 Heat of formation + Delta-G solvation = -99.591946 kcal Electronic energy + Delta-G solvation = -20775.519751 eV Core-core repulsion = 17395.204041 eV Total energy + Delta-G solvation = -3380.315710 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.88621 -41.33281 -39.45397 -38.30109 -36.55098 -33.93583 -32.54154 -32.15337 -28.59417 -28.22840 -27.13694 -25.72112 -23.91442 -22.99127 -20.94498 -18.99936 -18.80708 -18.24137 -17.60774 -17.43199 -16.89512 -16.56722 -16.48896 -15.93693 -15.54466 -15.41914 -15.23216 -14.49849 -14.47988 -14.23842 -13.81018 -13.68154 -13.42560 -13.16124 -13.00324 -12.66456 -12.54132 -12.45488 -12.21968 -12.14249 -11.76022 -11.38459 -11.00687 -10.21298 -10.02167 -9.64749 -9.44629 -8.34703 -6.01188 0.08476 0.30629 1.35832 1.40327 1.51815 1.92021 2.24614 2.51591 2.67209 3.06499 3.22510 3.28040 3.66520 3.77144 3.93124 4.03116 4.06899 4.33887 4.46943 4.51318 4.56755 4.62459 4.83356 4.94508 4.96677 5.01109 5.14713 5.24370 5.38942 5.43157 5.47317 5.90091 5.99035 6.15754 6.49172 7.15208 7.42622 7.99223 8.67190 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.007743 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.217048 B = 3615.417169 C = 4824.964334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.135 3.865 4 H 0.110 0.890 5 C 0.417 3.583 6 O -0.623 6.623 7 N -0.451 5.451 8 C 0.111 3.889 9 C -0.348 4.348 10 H 0.068 0.932 11 C 0.003 3.997 12 N -0.889 5.889 13 Si 0.986 3.014 14 H -0.262 1.262 15 H -0.274 1.274 16 H -0.279 1.279 17 C -0.102 4.102 18 C -0.071 4.071 19 C -0.149 4.149 20 C 0.089 3.911 21 F -0.143 7.143 22 C -0.160 4.160 23 C -0.074 4.074 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.025 0.975 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.274 0.726 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.150 0.850 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -1.758 11.867 12.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.295 6.295 3 C 0.074 3.926 4 H 0.127 0.873 5 C 0.206 3.794 6 O -0.510 6.510 7 N -0.170 5.170 8 C -0.031 4.031 9 C -0.476 4.476 10 H 0.086 0.914 11 C -0.200 4.200 12 N -0.527 5.527 13 Si 0.810 3.190 14 H -0.187 1.187 15 H -0.199 1.199 16 H -0.204 1.204 17 C -0.103 4.103 18 C -0.089 4.089 19 C -0.168 4.168 20 C 0.070 3.930 21 F -0.122 7.122 22 C -0.179 4.179 23 C -0.092 4.092 24 H 0.125 0.875 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.180 0.820 32 H 0.183 0.817 33 H 0.168 0.832 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.913 -2.126 11.481 11.832 hybrid contribution 0.240 0.431 -1.162 1.262 sum -1.674 -1.695 10.320 10.591 Atomic orbital electron populations 1.23011 0.79235 1.04295 1.00365 1.87872 1.21751 1.25372 1.94539 1.20561 0.93926 0.86821 0.91312 0.87284 1.21427 0.84232 0.81862 0.91859 1.90483 1.58059 1.54856 1.47610 1.43821 1.56119 1.10184 1.06875 1.21947 0.99419 0.94298 0.87444 1.19584 1.23265 1.19545 0.85174 0.91403 1.26040 0.93426 0.97737 1.02770 1.70037 1.18605 1.28794 1.35270 0.85043 0.77981 0.78406 0.77581 1.18680 1.19899 1.20423 1.19571 0.95288 0.96773 0.98650 1.21240 0.96886 0.97336 0.93433 1.21316 0.94081 0.98592 1.02773 1.17876 0.82239 0.97036 0.95886 1.91470 1.43660 1.96688 1.80399 1.21230 0.97944 0.99907 0.98830 1.20850 0.92806 0.98110 0.97445 0.87515 0.91181 0.95654 0.92568 0.92231 0.91451 0.91606 0.81978 0.81743 0.83245 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.81 113.37 1.23 1.98 16 2 O -0.38 -13.93 9.21 -129.99 -1.20 -15.13 16 3 C 0.14 5.05 2.06 29.10 0.06 5.11 16 4 H 0.11 3.31 6.65 -2.39 -0.02 3.29 16 5 C 0.42 20.81 6.99 87.66 0.61 21.43 16 6 O -0.62 -36.67 16.23 15.90 0.26 -36.41 16 7 N -0.45 -23.05 3.01 -658.88 -1.98 -25.04 16 8 C 0.11 4.64 6.74 127.77 0.86 5.50 16 9 C -0.35 -19.80 9.23 84.04 0.78 -19.03 16 10 H 0.07 4.17 7.46 -2.91 -0.02 4.14 16 11 C 0.00 0.15 5.06 84.93 0.43 0.58 16 12 N -0.89 -46.32 10.83 21.66 0.23 -46.08 16 13 Si 0.99 42.32 29.57 68.60 2.03 44.35 16 14 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 15 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 C -0.10 -3.52 4.50 -19.86 -0.09 -3.61 16 18 C -0.07 -2.02 6.80 22.26 0.15 -1.87 16 19 C -0.15 -3.97 10.03 22.31 0.22 -3.75 16 20 C 0.09 2.61 7.30 22.38 0.16 2.78 16 21 F -0.14 -4.13 17.27 44.97 0.78 -3.35 16 22 C -0.16 -4.92 10.03 22.31 0.22 -4.69 16 23 C -0.07 -2.59 9.35 22.26 0.21 -2.38 16 24 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.07 1.50 8.09 -2.39 -0.02 1.48 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 2.40 6.11 -2.38 -0.01 2.39 16 28 H 0.06 2.65 6.78 -2.39 -0.02 2.63 16 29 H 0.07 2.14 4.82 -2.39 -0.01 2.13 16 30 H 0.27 13.39 8.31 -92.70 -0.77 12.62 16 31 H 0.16 3.66 6.02 -2.91 -0.02 3.64 16 32 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 34 H 0.12 4.54 7.78 -2.91 -0.02 4.51 16 Total: -1.00 -70.50 290.73 6.09 -64.41 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.13 Total: 15.21 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 4.84 Total: 2.05 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -1.75 Total: -71.12 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -0.94 Total: -51.54 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.78 Total: -3.35 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -70.50 6.09 -64.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599227200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.182 kcal (2) G-P(sol) polarization free energy of solvation -70.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds