Wall clock time and date at job start Mon Mar 30 2020 00:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.47198 * 2 1 4 4 C 1.46503 * 120.00367 * 91.42018 * 3 2 1 5 5 C 1.50698 * 109.47070 * 89.99953 * 4 3 2 6 6 H 1.07999 * 119.99960 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99644 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00583 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99637 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47451 * 89.99798 * 9 7 5 11 11 H 1.48505 * 109.46761 * 209.99895 * 9 7 5 12 12 H 1.48498 * 109.47200 * 329.99669 * 9 7 5 13 13 C 1.34778 * 119.99908 * 271.41924 * 3 2 1 14 14 O 1.21699 * 120.00210 * 185.82793 * 13 3 2 15 15 C 1.46587 * 119.99926 * 5.83141 * 13 3 2 16 16 S 1.75826 * 125.45722 * 6.89853 * 15 13 3 17 17 C 1.70618 * 91.56336 * 179.91686 * 16 15 13 18 18 C 1.50702 * 124.52563 * 180.02562 * 17 16 15 19 19 C 1.33823 * 110.95237 * 0.35163 * 17 16 15 20 20 C 1.36650 * 125.45713 * 187.20786 * 15 13 3 21 21 C 1.50703 * 123.34908 * 359.97438 * 20 15 13 22 22 H 1.09004 * 109.46842 * 299.99741 * 1 2 3 23 23 H 1.08992 * 109.46914 * 59.99902 * 1 2 3 24 24 H 1.08995 * 109.47208 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46766 * 239.99516 * 2 1 3 26 26 H 1.09000 * 109.46810 * 119.99841 * 2 1 3 27 27 H 1.09003 * 109.47099 * 210.00174 * 4 3 2 28 28 H 1.09000 * 109.46495 * 329.99963 * 4 3 2 29 29 H 0.97001 * 120.00300 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46710 * 270.34944 * 18 17 16 31 31 H 1.08995 * 109.46899 * 30.35020 * 18 17 16 32 32 H 1.08994 * 109.47258 * 150.35228 * 18 17 16 33 33 H 1.07995 * 122.45006 * 179.74488 * 19 17 16 34 34 H 1.09005 * 109.47080 * 90.00121 * 21 20 15 35 35 H 1.09003 * 109.46884 * 209.99373 * 21 20 15 36 36 H 1.08996 * 109.47505 * 330.00004 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2922 2.0614 1.2683 5 6 3.7252 1.8211 1.6680 6 1 4.3679 1.2220 1.0398 7 6 4.2159 2.3661 2.8355 8 7 3.4335 3.0960 3.6002 9 14 5.9925 2.0689 3.3306 10 1 6.8504 3.1395 2.7625 11 1 6.1021 2.0802 4.8116 12 1 6.4371 0.7506 2.8114 13 6 2.2158 2.0261 -1.1669 14 8 2.7207 3.1334 -1.1723 15 6 1.8222 1.3939 -2.4295 16 16 0.9315 -0.1145 -2.5806 17 6 0.9589 -0.0143 -4.2837 18 6 0.3424 -1.0314 -5.2092 19 6 1.6071 1.0845 -4.6880 20 6 2.0939 1.8793 -3.6776 21 6 2.8515 3.1590 -3.9220 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.1223 3.1316 1.1507 28 1 1.6293 1.6709 2.0404 29 1 3.7789 3.4798 4.4215 30 1 1.0772 -1.8015 -5.4438 31 1 -0.5204 -1.4879 -4.7243 32 1 0.0246 -0.5402 -6.1288 33 1 1.7379 1.3290 -5.7317 34 1 3.9174 2.9423 -3.9928 35 1 2.5100 3.6111 -4.8532 36 1 2.6750 3.8489 -3.0969 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601009860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:10 Heat of formation + Delta-G solvation = -8.261360 kcal Electronic energy + Delta-G solvation = -18424.693380 eV Core-core repulsion = 15614.551237 eV Total energy + Delta-G solvation = -2810.142143 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.31057 -37.80791 -35.32399 -32.97378 -32.37214 -30.25803 -28.56394 -27.73426 -26.21461 -23.15645 -22.92094 -21.79776 -19.93149 -17.77662 -17.48752 -16.40554 -15.64951 -15.24263 -14.65440 -14.57722 -14.06760 -13.85515 -13.78045 -13.21900 -12.95863 -12.82934 -12.62450 -12.26551 -12.04960 -11.86070 -11.67749 -11.58945 -11.36739 -11.14404 -10.92481 -10.70540 -10.57839 -10.28465 -10.05372 -9.64315 -8.95865 -8.42795 -8.34411 -8.01559 -7.65294 -6.03702 -4.08161 0.82901 1.77995 2.19133 2.65702 3.32502 3.38492 3.40900 3.82885 3.94285 4.46111 4.82082 5.05782 5.15615 5.24027 5.31385 5.38651 5.42976 5.50442 5.57003 5.69351 5.78042 5.79736 5.97756 6.02671 6.15362 6.21842 6.28872 6.45273 6.61958 6.81601 7.06853 7.41965 7.51620 7.92486 8.23069 8.36023 8.89408 9.05398 9.56810 11.04372 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.005685 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.699676 B = 4924.390941 C = 5409.061018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.094 3.906 3 N -0.593 5.593 4 C 0.249 3.751 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.577 3.423 14 O -0.524 6.524 15 C -0.264 4.264 16 S 0.229 5.771 17 C -0.247 4.247 18 C -0.079 4.079 19 C -0.154 4.154 20 C -0.031 4.031 21 C -0.106 4.106 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.263 0.737 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.544 -9.023 -14.295 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.032 4.032 3 N -0.324 5.324 4 C 0.130 3.870 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.364 3.636 14 O -0.403 6.403 15 C -0.384 4.384 16 S 0.499 5.501 17 C -0.365 4.365 18 C -0.138 4.138 19 C -0.184 4.184 20 C -0.045 4.045 21 C -0.164 4.164 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.149 0.851 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.893 -9.400 -13.091 17.945 hybrid contribution 1.569 0.743 -0.817 1.919 sum -6.324 -8.657 -13.908 17.560 Atomic orbital electron populations 1.22455 0.96340 1.02341 1.02777 1.21717 0.94092 0.84741 1.02681 1.48151 1.63720 1.12775 1.07727 1.19312 0.96299 0.93668 0.77676 1.21426 0.96398 1.32345 1.06219 0.92415 1.24920 0.97939 0.94912 0.96242 1.69929 1.35785 1.33872 1.13861 0.86499 0.84862 0.78671 0.77396 1.20529 1.21159 1.19938 1.16927 0.79289 0.85434 0.81947 1.90733 1.43697 1.19896 1.85974 1.24741 1.13169 1.02233 0.98257 1.83839 1.51124 1.19824 0.95270 1.24897 1.06038 1.01545 1.03998 1.20287 0.99863 0.96213 0.97407 1.19721 1.03101 0.95515 1.00109 1.19400 0.97175 0.97504 0.90468 1.20731 0.98796 0.93921 1.02962 0.91319 0.91882 0.91367 0.91177 0.88653 0.93782 0.94735 0.92718 0.91001 0.91523 0.91114 0.85072 0.91164 0.92306 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 8.97 37.16 0.33 -2.13 16 2 C 0.09 1.58 5.62 -4.04 -0.02 1.55 16 3 N -0.59 -12.99 2.46 -176.64 -0.43 -13.43 16 4 C 0.25 6.54 5.11 -5.19 -0.03 6.52 16 5 C -0.53 -15.00 9.39 -34.44 -0.32 -15.32 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.58 12.88 7.60 -12.89 -0.10 12.79 16 14 O -0.52 -13.50 13.88 5.19 0.07 -13.43 16 15 C -0.26 -4.76 6.20 -36.79 -0.23 -4.99 16 16 S 0.23 3.10 15.15 -107.50 -1.63 1.47 16 17 C -0.25 -3.08 6.28 -35.86 -0.23 -3.30 16 18 C -0.08 -0.70 10.31 36.01 0.37 -0.33 16 19 C -0.15 -2.10 9.82 -41.41 -0.41 -2.50 16 20 C -0.03 -0.51 5.90 -105.48 -0.62 -1.13 16 21 C -0.11 -1.67 9.64 36.01 0.35 -1.32 16 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.06 0.87 5.85 -38.14 -0.22 0.65 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.08 4.66 -24.01 -0.11 0.97 16 26 H 0.10 1.61 8.06 -51.93 -0.42 1.19 16 27 H 0.04 1.30 7.51 -51.93 -0.39 0.91 16 28 H 0.03 0.90 8.07 -51.93 -0.42 0.49 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.82 5.87 -51.93 -0.30 1.52 16 LS Contribution 307.12 15.07 4.63 4.63 Total: -1.00 -32.48 307.12 -7.44 -39.92 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.79 Total: -1.80 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.00 Total: -8.50 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.30 Total: -39.28 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.07 Total: -13.43 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.63 Total: 1.47 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.48 -7.44 -39.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.658 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds