Wall clock time and date at job start Mon Mar 30 2020 00:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.47198 * 2 1 4 4 C 1.46503 * 120.00367 * 91.42018 * 3 2 1 5 5 C 1.50698 * 109.47070 * 89.99953 * 4 3 2 6 6 H 1.07999 * 119.99960 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99644 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00583 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99637 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47451 * 89.99798 * 9 7 5 11 11 H 1.48505 * 109.46761 * 209.99895 * 9 7 5 12 12 H 1.48498 * 109.47200 * 329.99669 * 9 7 5 13 13 C 1.34778 * 119.99908 * 271.41924 * 3 2 1 14 14 O 1.21699 * 120.00210 * 185.82793 * 13 3 2 15 15 C 1.46587 * 119.99926 * 5.83141 * 13 3 2 16 16 S 1.75826 * 125.45722 * 6.89853 * 15 13 3 17 17 C 1.70618 * 91.56336 * 179.91686 * 16 15 13 18 18 C 1.50702 * 124.52563 * 180.02562 * 17 16 15 19 19 C 1.33823 * 110.95237 * 0.35163 * 17 16 15 20 20 C 1.36650 * 125.45713 * 187.20786 * 15 13 3 21 21 C 1.50703 * 123.34908 * 359.97438 * 20 15 13 22 22 H 1.09004 * 109.46842 * 299.99741 * 1 2 3 23 23 H 1.08992 * 109.46914 * 59.99902 * 1 2 3 24 24 H 1.08995 * 109.47208 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46766 * 239.99516 * 2 1 3 26 26 H 1.09000 * 109.46810 * 119.99841 * 2 1 3 27 27 H 1.09003 * 109.47099 * 210.00174 * 4 3 2 28 28 H 1.09000 * 109.46495 * 329.99963 * 4 3 2 29 29 H 0.97001 * 120.00300 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46710 * 270.34944 * 18 17 16 31 31 H 1.08995 * 109.46899 * 30.35020 * 18 17 16 32 32 H 1.08994 * 109.47258 * 150.35228 * 18 17 16 33 33 H 1.07995 * 122.45006 * 179.74488 * 19 17 16 34 34 H 1.09005 * 109.47080 * 90.00121 * 21 20 15 35 35 H 1.09003 * 109.46884 * 209.99373 * 21 20 15 36 36 H 1.08996 * 109.47505 * 330.00004 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2922 2.0614 1.2683 5 6 3.7252 1.8211 1.6680 6 1 4.3679 1.2220 1.0398 7 6 4.2159 2.3661 2.8355 8 7 3.4335 3.0960 3.6002 9 14 5.9925 2.0689 3.3306 10 1 6.8504 3.1395 2.7625 11 1 6.1021 2.0802 4.8116 12 1 6.4371 0.7506 2.8114 13 6 2.2158 2.0261 -1.1669 14 8 2.7207 3.1334 -1.1723 15 6 1.8222 1.3939 -2.4295 16 16 0.9315 -0.1145 -2.5806 17 6 0.9589 -0.0143 -4.2837 18 6 0.3424 -1.0314 -5.2092 19 6 1.6071 1.0845 -4.6880 20 6 2.0939 1.8793 -3.6776 21 6 2.8515 3.1590 -3.9220 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.1223 3.1316 1.1507 28 1 1.6293 1.6709 2.0404 29 1 3.7789 3.4798 4.4215 30 1 1.0772 -1.8015 -5.4438 31 1 -0.5204 -1.4879 -4.7243 32 1 0.0246 -0.5402 -6.1288 33 1 1.7379 1.3290 -5.7317 34 1 3.9174 2.9423 -3.9928 35 1 2.5100 3.6111 -4.8532 36 1 2.6750 3.8489 -3.0969 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601009860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:09 Heat of formation + Delta-G solvation = -28.383645 kcal Electronic energy + Delta-G solvation = -18425.565948 eV Core-core repulsion = 15614.551237 eV Total energy + Delta-G solvation = -2811.014710 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90081 -39.05566 -37.00583 -35.00967 -33.52756 -31.81075 -30.12326 -28.95790 -27.80329 -25.01739 -24.37628 -22.83812 -21.44048 -19.14284 -18.96796 -18.55687 -17.08257 -16.83210 -16.25666 -16.11517 -15.50227 -15.21281 -15.03768 -14.44804 -14.30307 -13.96959 -13.90510 -13.73457 -13.57946 -13.34752 -13.13487 -12.85136 -12.75620 -12.67581 -12.64119 -12.36821 -12.17562 -11.87487 -11.75165 -11.31561 -10.67418 -10.65810 -9.69439 -9.37648 -9.05793 -8.23746 -6.38516 -0.38798 0.60622 1.08423 1.35286 1.38738 1.46900 1.49065 2.19080 2.33250 2.41538 3.05640 3.67169 3.88676 3.93336 4.23021 4.29667 4.32679 4.47833 4.60335 4.68974 4.75875 4.80333 4.84928 4.86526 4.98009 5.04440 5.14796 5.18645 5.22394 5.31252 5.50964 5.52924 5.61613 5.80145 6.03807 6.64096 6.70754 7.23915 7.39247 8.83357 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.005685 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.699676 B = 4924.390941 C = 5409.061018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.086 3.914 3 N -0.601 5.601 4 C 0.266 3.734 5 C -0.543 4.543 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.281 1.281 11 H -0.271 1.271 12 H -0.263 1.263 13 C 0.568 3.432 14 O -0.580 6.580 15 C -0.322 4.322 16 S 0.278 5.722 17 C -0.223 4.223 18 C -0.083 4.083 19 C -0.170 4.170 20 C -0.028 4.028 21 C -0.106 4.106 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.110 0.890 25 H 0.090 0.910 26 H 0.092 0.908 27 H -0.002 1.002 28 H 0.030 0.970 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.116 -11.909 -16.416 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.038 4.038 3 N -0.331 5.331 4 C 0.145 3.855 5 C -0.582 4.582 6 H 0.067 0.933 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.207 1.207 11 H -0.196 1.196 12 H -0.188 1.188 13 C 0.358 3.642 14 O -0.463 6.463 15 C -0.442 4.442 16 S 0.549 5.451 17 C -0.342 4.342 18 C -0.141 4.141 19 C -0.199 4.199 20 C -0.044 4.044 21 C -0.164 4.164 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.129 0.871 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.016 0.984 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.177 0.823 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.494 -12.334 -15.215 21.349 hybrid contribution 1.672 1.596 -0.273 2.327 sum -6.822 -10.738 -15.487 20.043 Atomic orbital electron populations 1.22411 0.93634 1.04851 1.02171 1.22043 0.96304 0.81932 1.03526 1.48140 1.64056 1.14638 1.06292 1.18761 0.95448 0.91542 0.79729 1.21656 0.97369 1.32637 1.06523 0.93279 1.25821 1.02538 0.94377 0.96097 1.70040 1.37844 1.34448 1.14297 0.85427 0.79032 0.78763 0.77654 1.20712 1.19621 1.18766 1.17583 0.78298 0.84985 0.83338 1.90685 1.46238 1.22281 1.87075 1.24399 1.17456 1.05849 0.96467 1.83365 1.49245 1.16300 0.96170 1.25459 1.03495 1.01346 1.03882 1.20503 1.00675 0.95631 0.97298 1.19874 1.03723 0.95643 1.00680 1.19716 0.96253 0.97534 0.90865 1.20693 0.99012 0.93673 1.03044 0.92711 0.91782 0.87121 0.89325 0.89013 0.98365 0.95217 0.92300 0.89246 0.89837 0.89303 0.82332 0.91261 0.89053 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.48 8.97 71.98 0.65 -3.83 16 2 C 0.09 2.88 5.62 86.38 0.49 3.37 16 3 N -0.60 -27.66 2.46 -830.97 -2.04 -29.71 16 4 C 0.27 14.89 5.11 85.63 0.44 15.33 16 5 C -0.54 -32.37 9.39 25.60 0.24 -32.13 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.64 5.46 84.65 0.46 1.10 16 8 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 9 Si 0.97 45.86 29.54 68.60 2.03 47.88 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 12 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.57 26.83 7.60 86.42 0.66 27.49 16 14 O -0.58 -32.41 13.88 -4.35 -0.06 -32.47 16 15 C -0.32 -11.70 6.20 24.08 0.15 -11.55 16 16 S 0.28 6.80 15.15 -56.49 -0.86 5.95 16 17 C -0.22 -4.66 6.28 24.68 0.15 -4.50 16 18 C -0.08 -1.01 10.31 71.24 0.73 -0.27 16 19 C -0.17 -4.11 9.82 21.08 0.21 -3.90 16 20 C -0.03 -0.90 5.90 -20.42 -0.12 -1.02 16 21 C -0.11 -3.41 9.64 71.24 0.69 -2.73 16 22 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 23 H 0.06 1.67 5.85 -11.16 -0.07 1.60 16 24 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.09 2.62 4.66 -20.14 -0.09 2.53 16 26 H 0.09 3.10 8.06 -2.39 -0.02 3.09 16 27 H 0.00 -0.11 7.51 -2.39 -0.02 -0.13 16 28 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 29 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 34 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 36 H 0.06 2.47 5.87 -2.39 -0.01 2.45 16 Total: -1.00 -75.88 307.12 5.03 -70.85 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 0.94 Total: 6.63 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 4.74 Total: -12.66 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -1.76 Total: -86.17 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.06 Total: -32.47 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Atomic # 16 Polarization: 6.80 SS G_CDS: -0.86 Total: 5.95 kcal Total: -75.88 5.03 -70.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.463 kcal (2) G-P(sol) polarization free energy of solvation -75.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds