Wall clock time and date at job start Mon Mar 30 2020 00:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35964 * 116.99782 * 2 1 4 4 C 1.38730 * 119.97950 * 0.02562 * 3 2 1 5 5 C 1.38119 * 120.06005 * 179.69672 * 4 3 2 6 6 C 1.38794 * 120.00360 * 0.56010 * 5 4 3 7 7 N 1.40223 * 120.02070 * 179.71920 * 6 5 4 8 8 C 1.34773 * 120.00224 * 34.63617 * 7 6 5 9 9 O 1.21295 * 119.99935 * 355.54935 * 8 7 6 10 10 C 1.50697 * 120.00104 * 175.26682 * 8 7 6 11 11 C 1.53000 * 109.47506 * 180.27794 * 10 8 7 12 12 C 1.50697 * 109.47506 * 179.97438 * 11 10 8 13 13 H 1.08003 * 119.99675 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00257 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99669 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00122 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47035 * 60.00722 * 16 14 12 18 18 H 1.48498 * 109.47369 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47543 * 300.00731 * 16 14 12 20 20 C 1.39030 * 119.95314 * 359.44567 * 6 5 4 21 21 F 1.35095 * 120.02791 * 180.29675 * 20 6 5 22 22 C 1.38285 * 119.94442 * 0.27449 * 20 6 5 23 23 H 1.08991 * 109.47001 * 299.99472 * 1 2 3 24 24 H 1.08994 * 109.47308 * 59.99895 * 1 2 3 25 25 H 1.09009 * 109.46763 * 180.02562 * 1 2 3 26 26 H 1.08008 * 119.96916 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.99846 * 180.30012 * 5 4 3 28 28 H 0.96998 * 119.99610 * 214.64049 * 7 6 5 29 29 H 1.09002 * 109.47514 * 300.28505 * 10 8 7 30 30 H 1.09005 * 109.47118 * 60.28088 * 10 8 7 31 31 H 1.08996 * 109.47066 * 300.00464 * 11 10 8 32 32 H 1.09005 * 109.46692 * 60.00032 * 11 10 8 33 33 H 0.97005 * 119.99529 * 179.97438 * 15 14 12 34 34 H 1.07998 * 119.99680 * 179.97438 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2902 2.3747 0.0005 5 6 1.9154 3.6062 0.0069 6 6 3.3013 3.6810 0.0009 7 7 3.9365 4.9311 0.0014 8 6 3.3885 5.9652 0.6699 9 8 2.3067 5.8374 1.2034 10 6 4.1227 7.2781 0.7600 11 6 3.2914 8.2727 1.5727 12 6 4.0258 9.5855 1.6633 13 1 4.9891 9.6992 1.1883 14 6 3.4677 10.6417 2.3517 15 7 2.2945 10.5033 2.9297 16 14 4.3778 12.2691 2.4634 17 1 4.5980 12.8078 1.0971 18 1 3.5710 13.2344 3.2523 19 1 5.6881 12.0589 3.1297 20 6 4.0594 2.5155 0.0003 21 9 5.4085 2.5866 0.0006 22 6 3.4313 1.2836 -0.0002 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 0.2116 2.3171 0.0005 27 1 1.3259 4.5111 0.0122 28 1 4.7702 5.0517 -0.4795 29 1 5.0847 7.1238 1.2487 30 1 4.2841 7.6737 -0.2429 31 1 2.3295 8.4270 1.0839 32 1 3.1300 7.8771 2.5756 33 1 1.9020 11.2463 3.4144 34 1 4.0193 0.3777 -0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601714449.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:51 Heat of formation + Delta-G solvation = -121.859917 kcal Electronic energy + Delta-G solvation = -19335.979882 eV Core-core repulsion = 15954.698560 eV Total energy + Delta-G solvation = -3381.281322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.04730 -41.63244 -40.63674 -38.29115 -35.63167 -35.49074 -33.09579 -31.93249 -30.22663 -28.28295 -27.40847 -24.74884 -23.79381 -22.74832 -21.30337 -19.66567 -18.93191 -18.63085 -17.94454 -17.42531 -17.10868 -16.82095 -16.50557 -16.45060 -16.35241 -15.85072 -15.30287 -14.86529 -14.51240 -14.22852 -13.88875 -13.60790 -13.49490 -13.30593 -13.21321 -12.79085 -12.52398 -12.37257 -12.08248 -11.92370 -11.65850 -11.32869 -11.05405 -10.76614 -10.55192 -10.00318 -8.88828 -8.18093 -6.31760 -0.03920 0.10960 1.42850 1.46862 1.53964 1.54701 1.95010 2.17191 2.43690 2.49391 3.15239 3.16597 3.64011 3.83626 3.89996 4.16952 4.20099 4.42253 4.42413 4.43259 4.51895 4.53800 4.76937 4.93250 5.00647 5.04536 5.16658 5.26367 5.49438 5.62166 5.66036 5.84760 6.16967 6.28108 6.34388 6.85703 7.12154 7.38345 8.94196 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037453 B = 0.003512 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.426232 B = 7971.388662 C = 8609.190166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.322 6.322 3 C 0.140 3.860 4 C -0.192 4.192 5 C -0.072 4.072 6 C 0.066 3.934 7 N -0.663 5.663 8 C 0.515 3.485 9 O -0.560 6.560 10 C -0.117 4.117 11 C 0.042 3.958 12 C -0.545 4.545 13 H 0.076 0.924 14 C -0.005 4.005 15 N -0.936 5.936 16 Si 0.972 3.028 17 H -0.262 1.262 18 H -0.288 1.288 19 H -0.264 1.264 20 C 0.108 3.892 21 F -0.131 7.131 22 C -0.171 4.171 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.125 0.875 26 H 0.159 0.841 27 H 0.133 0.867 28 H 0.426 0.574 29 H 0.107 0.893 30 H 0.111 0.889 31 H -0.012 1.012 32 H -0.016 1.016 33 H 0.263 0.737 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 -20.791 -9.486 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.093 3.907 4 C -0.211 4.211 5 C -0.092 4.092 6 C -0.030 4.030 7 N -0.310 5.310 8 C 0.306 3.694 9 O -0.437 6.437 10 C -0.157 4.157 11 C 0.005 3.995 12 C -0.583 4.583 13 H 0.094 0.906 14 C -0.203 4.203 15 N -0.576 5.576 16 Si 0.796 3.204 17 H -0.187 1.187 18 H -0.214 1.214 19 H -0.188 1.188 20 C 0.086 3.914 21 F -0.109 7.109 22 C -0.190 4.190 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.143 0.857 26 H 0.177 0.823 27 H 0.151 0.849 28 H 0.265 0.735 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.006 0.994 32 H 0.003 0.997 33 H 0.072 0.928 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.283 -20.925 -8.991 22.777 hybrid contribution 0.396 1.209 0.193 1.287 sum 0.679 -19.716 -8.797 21.600 Atomic orbital electron populations 1.23435 0.75993 1.06009 1.02496 1.86061 1.23695 1.25500 1.88312 1.18623 0.91414 0.84882 0.95759 1.21422 1.01829 0.90632 1.07235 1.21042 0.92377 0.99116 0.96713 1.17903 0.92585 0.84611 1.07859 1.43429 1.27719 1.07574 1.52273 1.21589 0.85724 0.86258 0.75850 1.90645 1.22799 1.83458 1.46783 1.21676 1.00138 0.89883 1.03960 1.18697 0.94241 0.92945 0.93647 1.21678 1.05536 0.97311 1.33744 0.90606 1.26103 0.95772 1.03468 0.94958 1.70163 1.18452 1.33334 1.35657 0.85396 0.78402 0.77873 0.78715 1.18688 1.21364 1.18846 1.17027 0.76775 0.92445 1.05147 1.91493 1.28334 1.97067 1.94031 1.20230 0.92886 0.97086 1.08819 0.91923 0.91306 0.85658 0.82332 0.84889 0.73524 0.87469 0.87043 0.99369 0.99742 0.92848 0.81702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -5.93 10.50 -93.15 -0.98 -6.91 16 3 C 0.14 3.03 6.69 22.50 0.15 3.18 16 4 C -0.19 -4.40 9.03 22.36 0.20 -4.20 16 5 C -0.07 -2.12 8.70 22.37 0.19 -1.92 16 6 C 0.07 1.90 6.32 38.12 0.24 2.14 16 7 N -0.66 -19.40 5.23 -303.21 -1.59 -20.98 16 8 C 0.52 19.63 7.68 87.66 0.67 20.30 16 9 O -0.56 -26.07 13.40 -3.07 -0.04 -26.11 16 10 C -0.12 -4.56 5.64 29.85 0.17 -4.40 16 11 C 0.04 2.31 4.26 29.85 0.13 2.43 16 12 C -0.54 -30.59 9.11 25.60 0.23 -30.35 16 13 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 14 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 15 N -0.94 -58.77 13.29 21.45 0.28 -58.48 16 16 Si 0.97 43.95 29.54 68.60 2.03 45.97 16 17 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 20 C 0.11 2.72 7.31 22.47 0.16 2.88 16 21 F -0.13 -3.18 16.95 44.97 0.76 -2.42 16 22 C -0.17 -3.74 9.96 22.39 0.22 -3.52 16 23 H 0.06 0.65 7.66 -2.39 -0.02 0.63 16 24 H 0.07 0.61 7.66 -2.39 -0.02 0.60 16 25 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.16 2.79 6.29 -2.91 -0.02 2.77 16 27 H 0.13 4.53 6.19 -2.91 -0.02 4.51 16 28 H 0.43 9.53 8.67 -92.71 -0.80 8.73 16 29 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.11 3.74 8.14 -2.38 -0.02 3.72 16 31 H -0.01 -0.74 8.10 -2.39 -0.02 -0.76 16 32 H -0.02 -0.98 8.10 -2.38 -0.02 -1.00 16 33 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 34 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -73.97 301.37 4.75 -69.22 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.33 Total: 11.73 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 3.95 Total: -12.02 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -1.30 Total: -79.47 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.02 Total: -33.02 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.76 Total: -2.42 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -73.97 4.75 -69.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601714449.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.637 kcal (2) G-P(sol) polarization free energy of solvation -73.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds