Wall clock time and date at job start Mon Mar 30 2020 00:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37099 * 120.00172 * 2 1 4 4 H 1.07994 * 119.99676 * 142.82579 * 3 2 1 5 5 C 1.38945 * 119.99783 * 322.82711 * 3 2 1 6 6 N 1.31414 * 119.99820 * 158.40659 * 5 3 2 7 7 Si 1.86796 * 120.00242 * 338.40970 * 5 3 2 8 8 H 1.48499 * 109.47321 * 95.72195 * 7 5 3 9 9 H 1.48506 * 109.46908 * 215.72078 * 7 5 3 10 10 H 1.48495 * 109.47336 * 335.71832 * 7 5 3 11 11 C 1.34773 * 119.99708 * 180.02562 * 2 1 3 12 12 O 1.21296 * 120.00139 * 179.97438 * 11 2 1 13 13 C 1.50701 * 120.00132 * 359.97438 * 11 2 1 14 14 C 1.52998 * 109.47075 * 179.97438 * 13 11 2 15 15 O 1.42906 * 109.47038 * 179.97438 * 14 13 11 16 16 C 1.35903 * 116.99997 * 180.02562 * 15 14 13 17 17 C 1.38774 * 120.04130 * 359.71952 * 16 15 14 18 18 C 1.38130 * 119.99239 * 179.74792 * 17 16 15 19 19 C 1.38253 * 120.07767 * 0.53552 * 18 17 16 20 20 C 1.38473 * 120.08980 * 359.74247 * 19 18 17 21 21 F 1.35098 * 119.99964 * 180.02562 * 20 19 18 22 22 C 1.38389 * 120.00206 * 359.97438 * 20 19 18 23 23 H 1.09009 * 109.46691 * 265.13642 * 1 2 3 24 24 H 1.09001 * 109.47166 * 25.12967 * 1 2 3 25 25 H 1.08993 * 109.47321 * 145.13767 * 1 2 3 26 26 H 0.96997 * 120.00372 * 179.97438 * 6 5 3 27 27 H 1.09005 * 109.47061 * 60.00112 * 13 11 2 28 28 H 1.08992 * 109.47400 * 299.99796 * 13 11 2 29 29 H 1.09006 * 109.47315 * 60.00448 * 14 13 11 30 30 H 1.08994 * 109.47584 * 300.00088 * 14 13 11 31 31 H 1.08004 * 120.00060 * 0.02562 * 17 16 15 32 32 H 1.08000 * 119.95804 * 180.27586 * 18 17 16 33 33 H 1.08007 * 119.95320 * 179.76417 * 19 18 17 34 34 H 1.07996 * 120.04155 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2822 0.5651 5 6 1.6675 2.2683 -0.7271 6 7 2.0433 3.4889 -0.4175 7 14 0.4840 1.9867 -2.1445 8 1 -0.9113 2.1586 -1.6661 9 1 0.7617 2.9683 -3.2237 10 1 0.6607 0.6094 -2.6708 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3795 -3.6352 -0.0018 15 8 1.6649 -4.8728 -0.0012 16 6 2.4050 -6.0126 -0.0017 17 6 3.7909 -5.9410 -0.0086 18 6 4.5422 -7.1001 -0.0038 19 6 3.9152 -8.3323 -0.0033 20 6 2.5325 -8.4076 -0.0022 21 9 1.9217 -9.6126 -0.0012 22 6 1.7763 -7.2486 -0.0011 23 1 -0.3633 -0.0871 1.0241 24 1 -0.3633 0.9304 -0.4364 25 1 -0.3633 -0.8432 -0.5874 26 1 1.7065 4.2436 -0.9252 27 1 0.7583 -2.5298 -0.8903 28 1 0.7590 -2.5303 0.8896 29 1 3.0068 -3.5780 0.8878 30 1 3.0055 -3.5772 -0.8922 31 1 4.2820 -4.9791 -0.0131 32 1 5.6207 -7.0437 -0.0046 33 1 4.5046 -9.2373 -0.0034 34 1 0.6979 -7.3066 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608777529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:28 Heat of formation + Delta-G solvation = -80.463733 kcal Electronic energy + Delta-G solvation = -19326.040658 eV Core-core repulsion = 15946.554409 eV Total energy + Delta-G solvation = -3379.486249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.10624 -40.21833 -38.82605 -37.33002 -34.95890 -32.33881 -31.77331 -30.69976 -29.65148 -26.56705 -25.69311 -23.70017 -23.00623 -21.72913 -18.99904 -18.53440 -17.15590 -16.74069 -16.46913 -16.32697 -16.21113 -15.83252 -15.69545 -15.28365 -14.52517 -14.37383 -13.94591 -13.61366 -13.12619 -12.88773 -12.70970 -12.42028 -12.23071 -12.13551 -11.86240 -11.63845 -11.58864 -10.96844 -10.85627 -10.63168 -10.41946 -9.99222 -9.16452 -9.07571 -8.66568 -8.44128 -7.84260 -6.46851 -4.04935 0.94618 1.11597 2.91030 2.97644 3.16760 3.20872 3.41760 3.60002 4.07521 4.13739 4.44796 4.58083 4.79553 4.86800 4.91724 5.03052 5.16527 5.18737 5.19528 5.45111 5.63771 5.76108 5.79203 5.88331 5.91451 5.94470 6.08082 6.11957 6.17431 6.23253 6.55557 7.26049 7.45266 8.19000 8.39996 8.86212 9.22617 9.64290 10.64979 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.045275 B = 0.003467 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.298325 B = 8073.523441 C = 8399.911163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.465 5.465 3 C -0.320 4.320 4 H 0.107 0.893 5 C 0.059 3.941 6 N -0.862 5.862 7 Si 0.881 3.119 8 H -0.275 1.275 9 H -0.287 1.287 10 H -0.265 1.265 11 C 0.465 3.535 12 O -0.569 6.569 13 C -0.135 4.135 14 C 0.077 3.923 15 O -0.314 6.314 16 C 0.169 3.831 17 C -0.218 4.218 18 C -0.050 4.050 19 C -0.198 4.198 20 C 0.134 3.866 21 F -0.137 7.137 22 C -0.195 4.195 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.275 0.725 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 -19.171 0.017 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.187 5.187 3 C -0.447 4.447 4 H 0.124 0.876 5 C -0.147 4.147 6 N -0.498 5.498 7 Si 0.709 3.291 8 H -0.202 1.202 9 H -0.213 1.213 10 H -0.189 1.189 11 C 0.253 3.747 12 O -0.452 6.452 13 C -0.176 4.176 14 C 0.002 3.998 15 O -0.228 6.228 16 C 0.122 3.878 17 C -0.237 4.237 18 C -0.068 4.068 19 C -0.217 4.217 20 C 0.115 3.885 21 F -0.116 7.116 22 C -0.215 4.215 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.718 -18.927 -0.014 19.005 hybrid contribution -0.723 -0.019 -0.785 1.067 sum -2.441 -18.946 -0.799 19.119 Atomic orbital electron populations 1.22050 0.83182 1.01772 1.01255 1.43642 1.04186 1.05600 1.65252 1.19067 1.10323 0.85317 1.29995 0.87578 1.25378 0.97463 0.94745 0.97086 1.69751 1.43686 0.98122 1.38197 0.86903 0.80192 0.79056 0.82960 1.20176 1.21342 1.18897 1.19880 0.87992 0.84384 0.82423 1.90569 1.13748 1.87025 1.53862 1.21500 0.99074 0.92406 1.04612 1.22601 0.94504 0.79501 1.03206 1.86000 1.36216 1.12946 1.87591 1.18631 0.89797 0.86261 0.93120 1.21534 0.92854 1.00664 1.08602 1.20816 1.00223 0.90800 0.94942 1.21017 0.92505 0.99482 1.08739 1.17267 0.90627 0.79850 1.00769 1.91502 1.83635 1.42699 1.93765 1.20242 1.01263 0.89038 1.10937 0.92719 0.91510 0.92496 0.91465 0.88972 0.88971 0.90771 0.90778 0.84093 0.84638 0.84790 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.15 8.78 59.85 0.53 1.67 16 2 N -0.47 -10.96 2.59 -122.19 -0.32 -11.28 16 3 C -0.32 -8.93 9.37 -14.93 -0.14 -9.07 16 4 H 0.11 3.33 7.90 -52.49 -0.41 2.91 16 5 C 0.06 1.62 5.29 -17.47 -0.09 1.53 16 6 N -0.86 -24.58 13.96 55.50 0.77 -23.80 16 7 Si 0.88 20.10 24.96 -169.99 -4.24 15.86 16 8 H -0.27 -5.79 6.69 56.52 0.38 -5.42 16 9 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 11 C 0.47 10.29 7.63 -10.99 -0.08 10.20 16 12 O -0.57 -14.59 15.85 5.54 0.09 -14.50 16 13 C -0.14 -2.19 4.69 -27.88 -0.13 -2.32 16 14 C 0.08 1.15 4.03 37.16 0.15 1.30 16 15 O -0.31 -4.43 10.14 -19.43 -0.20 -4.63 16 16 C 0.17 2.18 6.69 -39.22 -0.26 1.92 16 17 C -0.22 -2.56 9.04 -39.42 -0.36 -2.92 16 18 C -0.05 -0.49 10.04 -39.62 -0.40 -0.89 16 19 C -0.20 -1.96 10.02 -39.49 -0.40 -2.35 16 20 C 0.13 1.51 7.30 -39.44 -0.29 1.22 16 21 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 22 C -0.20 -2.32 9.97 -39.37 -0.39 -2.72 16 23 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 24 H 0.07 1.34 3.42 -51.93 -0.18 1.17 16 25 H 0.06 0.88 6.64 -51.93 -0.34 0.53 16 26 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.09 1.35 7.41 -51.93 -0.38 0.96 16 28 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 29 H 0.07 1.12 7.63 -51.93 -0.40 0.72 16 30 H 0.07 1.13 7.61 -51.93 -0.40 0.74 16 31 H 0.14 1.64 6.30 -52.48 -0.33 1.31 16 32 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 294.14 15.07 4.43 4.43 Total: -1.00 -31.17 294.14 -5.00 -36.17 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -3.71 Total: 1.69 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -1.86 Total: -2.41 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.46 Total: -35.08 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.11 Total: -19.13 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.24 Total: 15.86 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.17 -5.00 -36.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608777529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.296 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds